RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 GOLGA2P5Q9HBQ8 144 aa10.3□□□□□ -0.76
LIG3-201ENST00000262327 CDH22Q9UJ99 828 aa10.3□□□□□ -0.76
LIG3-201ENST00000262327 GJD2Q9UKL4 321 aa10.3□□□□□ -0.76
LIG3-201ENST00000262327 BIRC5O15392 142 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 HBP1O60381 514 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 AOC1P19801 751 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 GSTT1P30711 240 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 SERPINB9P50453 376 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 INCA1Q0VD86 236 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 NOGQ13253 232 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 MSLNQ13421 630 aaPredicted RBP10.29□□□□□ -0.76
LIG3-201ENST00000262327 DCAF6Q58WW2 860 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 FAM219BQ5XKK7 198 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 TAPT1Q6NXT6 567 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 PID1Q7Z2X4 250 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 DCLK2Q8N568 766 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 ARL10Q8N8L6 244 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 LRRC39Q96DD0 335 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 QKIQ96PU8 341 aaKnown RBP eCLIP10.29□□□□□ -0.76
LIG3-201ENST00000262327 GCNAQ96QF7 691 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 OR52B2Q96RD2 323 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 SLC4A5Q9BY07 1137 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 KATNBL1Q9H079 304 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 OCEL1Q9H607 264 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 PLXNA1Q9UIW2 1896 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 MYOCOSA0A1B0GUC4 107 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 CLDN5O00501 218 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 MDM4O15151 490 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 CFLARO15519 480 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 GLRA3O75311 464 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 OR6B1O95007 311 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 PGM3O95394 542 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 LTFP02788 710 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 SERPINE1P05121 402 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 MCF2P10911 925 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 TPSB2P20231 275 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 ITGAXP20702 1163 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 ATICP31939 592 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 GLRBP48167 497 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 NDUFV1P49821 464 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 TBL3Q12788 808 aaKnown RBP10.29□□□□□ -0.76
LIG3-201ENST00000262327 SEMA5AQ13591 1074 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 LAMC2Q13753 1193 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 TPSAB1Q15661 275 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 KYAT3Q6YP21 454 aaKnown RBP10.29□□□□□ -0.76
LIG3-201ENST00000262327 ARCQ7LC44 396 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 PLPPR4Q7Z2D5 763 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 TMEM110Q86TL2 294 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 CDKL2Q92772 493 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 ATP2A3Q93084 1043 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 EMID1Q96A84 441 aaPredicted RBP10.29□□□□□ -0.76
LIG3-201ENST00000262327 ZNF669Q96BR6 464 aaPredicted RBP10.29□□□□□ -0.76
LIG3-201ENST00000262327 TINF2Q9BSI4 451 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 EIF2AQ9BY44 585 aaKnown RBP10.29□□□□□ -0.76
LIG3-201ENST00000262327 FRMD8Q9BZ67 464 aaPredicted RBP10.29□□□□□ -0.76
LIG3-201ENST00000262327 ABHD16BQ9H3Z7 469 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 PRDM12Q9H4Q4 367 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 ASB7Q9H672 318 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 COG4Q9H9E3 785 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 SNX15Q9NRS6 342 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 COPG2Q9UBF2 871 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 PCDHGB4Q9UN71 923 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 POMPQ9Y244 141 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 PCDHGB5Q9Y5G0 923 aa10.29□□□□□ -0.76
LIG3-201ENST00000262327 BPTFQ12830 3046 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 A0A0A0MRY4 1105 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 HSPA4LO95757 839 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 SNAI1O95863 264 aaPredicted RBP10.28□□□□□ -0.76
LIG3-201ENST00000262327 CHRNGP07510 517 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 CRABP2P29373 138 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 GRIA2P42262 883 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 MAGEA6P43360 314 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 SULT1E1P49888 294 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 ABCE1P61221 599 aaKnown RBP10.28□□□□□ -0.76
LIG3-201ENST00000262327 NIPAL4Q0D2K0 466 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 CRHR2Q13324 411 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 MPP3Q13368 585 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 DPYSL2Q16555 572 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 PKDCCQ504Y2 493 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 HSP90AA5PQ58FG0 334 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 DEFB106AQ8N104 65 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 SPATA6LQ8N4H0 392 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 SLC2A14Q8TDB8 520 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 SOCS4Q8WXH5 440 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 USP13Q92995 863 aaPredicted RBP10.28□□□□□ -0.76
LIG3-201ENST00000262327 MFSD3Q96ES6 412 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 SPATA13Q96N96 652 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 CACNG4Q9UBN1 327 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 CAPN8A6NHC0 703 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 GAS2O43903 313 aaKnown RBP10.28□□□□□ -0.76
LIG3-201ENST00000262327 TSPAN1O60635 241 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 CPA3P15088 417 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 IGFBP6P24592 240 aaPredicted RBP10.28□□□□□ -0.76
LIG3-201ENST00000262327 ACAT1P24752 427 aaKnown RBP10.28□□□□□ -0.76
LIG3-201ENST00000262327 AVPR1AP37288 418 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 ARL4AP40617 200 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 SLC26A2P50443 739 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 CNPY1Q3B7I2 92 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 STRA8Q7Z7C7 330 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 ZNF567Q8N184 647 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms