RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 LHX1P48742 406 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 SULT1E1P49888 294 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 SESN2P58004 480 aaPredicted RBP8.91□□□□□ -0.98
VPS4B-201ENST00000238497 TRNP1Q6NT89 227 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 DEFB106AQ8N104 65 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 ANKS4BQ8N8V4 417 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 BBOF1Q8ND07 529 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 SNRNP25Q9BV90 132 aaKnown RBP8.91□□□□□ -0.98
VPS4B-201ENST00000238497 TRMT61BQ9BVS5 477 aaKnown RBP8.91□□□□□ -0.98
VPS4B-201ENST00000238497 ZCWPW1Q9H0M4 648 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 WDR35Q9P2L0 1181 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 C2orf16Q68DN1 1984 aa8.91□□□□□ -0.98
VPS4B-201ENST00000238497 M0QYT0 321 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 PI15O43692 258 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 AGTP01019 485 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 AVPR1AP37288 418 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 MSH2P43246 934 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 ARL4CP56559 192 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 GBE1Q04446 702 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 MSS51Q4VC12 460 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 INTS6LQ5JSJ4 861 aaKnown RBP8.9□□□□□ -0.98
VPS4B-201ENST00000238497 ASTLQ6HA08 431 aaPredicted RBP8.9□□□□□ -0.98
VPS4B-201ENST00000238497 CES3Q6UWW8 571 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 PIGZQ86VD9 579 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 TMEM86AQ8N2M4 240 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 ALLCQ8N6M5 410 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 MAB21L3Q8N8X9 362 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 SHKBP1Q8TBC3 707 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 FBF1Q8TES7 1133 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 TMEM174Q8WUU8 243 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 SEC14L1Q92503 715 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 SMARCD2Q92925 531 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 SMC6Q96SB8 1091 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 RTP3Q9BQQ7 232 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 ZNF334Q9HCZ1 680 aaPredicted RBP8.9□□□□□ -0.98
VPS4B-201ENST00000238497 HEBP1Q9NRV9 189 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 IL1RAPL1Q9NZN1 696 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 SLC12A6Q9UHW9 1150 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 PCDHGC3Q9UN70 934 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 STK38LQ9Y2H1 464 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 GON4LQ3T8J9 2241 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 KRBA1A5PL33 1030 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 KCNK1O00180 336 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 APOL1O14791 398 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 FAM155BO75949 473 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 MOCS2O96007 188 aaPredicted RBP8.9□□□□□ -0.98
VPS4B-201ENST00000238497 CYP11A1P05108 521 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 KRT4P19013 534 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 ATICP31939 592 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 ELK3P41970 407 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 CCDC14Q49A88 953 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 TPRG1Q6ZUI0 275 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 RTL10Q7L3V2 364 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 ARID3BQ8IVW6 561 aaPredicted RBP8.9□□□□□ -0.98
VPS4B-201ENST00000238497 CCDC197Q8NCU1 140 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 MRPS31Q92665 395 aaKnown RBP8.9□□□□□ -0.98
VPS4B-201ENST00000238497 ZFYVE19Q96K21 471 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 APOL2Q9BQE5 337 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 BCO2Q9BYV7 579 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 TRABDQ9H4I3 376 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 CYP3A43Q9HB55 503 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 UBP1Q9NZI7 540 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 DCTN4Q9UJW0 460 aa8.9□□□□□ -0.98
VPS4B-201ENST00000238497 VPS13AQ96RL7 3174 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 A0A087WUV0 522 aaPredicted RBP8.9□□□□□ -0.99
VPS4B-201ENST00000238497 SHOX2O60902 331 aaPredicted RBP8.9□□□□□ -0.99
VPS4B-201ENST00000238497 CDH16O75309 829 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 USP12O75317 370 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 BEST1O76090 585 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 VNN2O95498 520 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 CKMP06732 381 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 NCAM1P13591 858 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 GOT1P17174 413 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 ARL4AP40617 200 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 KPNA1P52294 538 aaPredicted RBP8.9□□□□□ -0.99
VPS4B-201ENST00000238497 ZNF143P52747 638 aaPredicted RBP8.9□□□□□ -0.99
VPS4B-201ENST00000238497 RPL10AP62906 217 aaKnown RBP8.9□□□□□ -0.99
VPS4B-201ENST00000238497 PFKPQ01813 784 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 OVGP1Q12889 678 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 SPARCL1Q14515 664 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 SLC44A4Q53GD3 710 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 C4orf50Q6ZRC1 276 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 TOP6BLQ8N6T0 577 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 TMEM105Q8N8V8 129 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 USP33Q8TEY7 942 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 MYLPFQ96A32 169 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 TTC17Q96AE7 1141 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 LGMNQ99538 433 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 ACBD6Q9BR61 282 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 PLA2G2FQ9BZM2 168 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 IQCGQ9H095 443 aaKnown RBP8.9□□□□□ -0.99
VPS4B-201ENST00000238497 CNTN6Q9UQ52 1028 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 SNX10Q9Y5X0 201 aa8.9□□□□□ -0.99
VPS4B-201ENST00000238497 HEPACAM2A8MVW5 462 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 NRG2O14511 850 aaPredicted RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 NUDT17P0C025 328 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 USP17L7P0C7H9 530 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 HAPLN1P10915 354 aaPredicted RBP8.89□□□□□ -0.99
VPS4B-201ENST00000238497 SLC6A3Q01959 620 aa8.89□□□□□ -0.99
VPS4B-201ENST00000238497 SLC25A11Q02978 314 aaKnown RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms