RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PRMT7Q9NVM4 692 aaPredicted RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 ERAP1Q9NZ08 941 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 INPP5FQ9Y2H2 1132 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 H3BRB1 525 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 M0QYT0 321 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 PEX1O43933 1283 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 HBP1O60381 514 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 GJB3O75712 270 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 RALBP11234 206 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CRABP2P29373 138 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 RBP5P82980 135 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CDKL1Q00532 357 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 RASSF3Q86WH2 238 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CEP97Q8IW35 865 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CPNE9Q8IYJ1 553 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 C3orf58Q8NDZ4 430 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 OR6Y1Q8NGX8 325 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 GDPD5Q8WTR4 605 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 C2orf40Q9H1Z8 148 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 SMARCAD1Q9H4L7 1026 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 TUT1Q9H6E5 874 aaKnown RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 TXNDC9O14530 226 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 IL18RAPO95256 599 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 C2P06681 752 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 EPHX2P34913 555 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 SULT1E1P49888 294 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 MPP1Q00013 466 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 DSG1Q02413 1049 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 PDK2Q15119 407 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 ZBTB6Q15916 424 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 NET1Q7Z628 596 aaPredicted RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 PDSS2Q86YH6 399 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 MCUQ8NE86 351 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CERS2Q96G23 380 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 SLC39A3Q9BRY0 314 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 MMADHCQ9H3L0 296 aaPredicted RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 ZNF212Q9UDV6 495 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 TBL3Q12788 808 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 LBRQ14739 615 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 EFHC1Q5JVL4 640 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 C9orf57Q5W0N0 161 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 DHDDSQ86SQ9 333 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 HMGCLL1Q8TB92 370 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 PPCSQ9HAB8 311 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 FZD10Q9ULW2 581 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 PRRC2BQ5JSZ5 2229 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 DPYSL4O14531 572 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 TRDMT1O14717 391 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 CFLARO15519 480 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 DNAJA2O60884 412 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 MCF2P10911 925 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 SKIP12755 728 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 ERCC2P18074 760 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 GSTT1P30711 240 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 PLK1P53350 603 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 MAP3K7CLP57077 242 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 GRM3Q14832 879 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 PPP1R3AQ16821 1122 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 FBXO48Q5FWF7 155 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 PITRM1Q5JRX3 1037 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 MAP7D3Q8IWC1 876 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 CNTD1Q8N815 330 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 ZNF512Q96ME7 567 aaPredicted RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 KLHL32Q96NJ5 620 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 CATSPER2Q96P56 530 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 GIMAP2Q9UG22 337 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 TSC2P49815 1807 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 IL1BP01584 269 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 FGFR3P22607 806 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 SERPINB6P35237 376 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 SOX11P35716 441 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 CHRNA4P43681 627 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 NAGLUP54802 743 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 ABCE1P61221 599 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 CEACAM7Q14002 265 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 IHHQ14623 411 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 PDK1Q15118 436 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 TSTD2Q5T7W7 516 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 FAM91A1Q658Y4 838 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 ATG16L1Q676U5 607 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 STEAP4Q687X5 459 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 NMD3Q96D46 503 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 NPAS2Q99743 824 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 PCDHAC1Q9H158 963 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 ASB7Q9H672 318 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 SCOCQ9UIL1 159 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 SF3B1O75533 1304 aaKnown RBP eCLIP10.93□□□□□ -0.668e-6■■■■■ 107
USP28-201ENST00000003302 A0A096LPK6 155 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 SNAI1O95863 264 aaPredicted RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 RPS12P25398 132 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 PTPN3P26045 913 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 PCSK6P29122 969 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 COPAP53621 1224 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 C11orf91Q3C1V1 193 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 MARK2Q7KZI7 788 aaKnown RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 LDB1Q86U70 411 aaPredicted RBP10.93□□□□□ -0.66
USP28-201ENST00000003302 SNX32Q86XE0 403 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 NT5DC4Q86YG4 428 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 LSMEM2Q8N112 164 aa10.93□□□□□ -0.66
USP28-201ENST00000003302 APBA2Q99767 749 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms