RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 TRPM1Q7Z4N2 1603 aa20.12■□□□□ 0.81
LINC00339-211ENST00000641009 FAM83GA6ND36 823 aa20.11■□□□□ 0.81
LINC00339-211ENST00000641009 L3MBTL2Q969R5 705 aa20.11■□□□□ 0.81
LINC00339-211ENST00000641009 SIN3AQ96ST3 1273 aa20.11■□□□□ 0.81
LINC00339-211ENST00000641009 PHRF1Q9P1Y6 1649 aaKnown RBP20.11■□□□□ 0.81
LINC00339-211ENST00000641009 VPS72Q15906 364 aa20.09■□□□□ 0.81
LINC00339-211ENST00000641009 CCDC9Q9Y3X0 531 aaKnown RBP20.08■□□□□ 0.81
LINC00339-211ENST00000641009 NEUROD1Q13562 356 aa20.07■□□□□ 0.8
LINC00339-211ENST00000641009 CCDC61Q9Y6R9 512 aa20.07■□□□□ 0.8
LINC00339-211ENST00000641009 CENPJQ9HC77 1338 aaPredicted RBP20.07■□□□□ 0.8
LINC00339-211ENST00000641009 POLR3AO14802 1390 aaPredicted RBP20.07■□□□□ 0.8
LINC00339-211ENST00000641009 SRCAPQ6ZRS2 3230 aa20.06■□□□□ 0.8
LINC00339-211ENST00000641009 ACEP12821 1306 aa20.06■□□□□ 0.8
LINC00339-211ENST00000641009 BTG4Q9NY30 223 aa20.05■□□□□ 0.8
LINC00339-211ENST00000641009 SRPK2P78362 688 aaKnown RBP20.04■□□□□ 0.8
LINC00339-211ENST00000641009 NBPF8Q3BBV2 869 aa20.04■□□□□ 0.8
LINC00339-211ENST00000641009 SEPT12Q8IYM1 358 aa20.04■□□□□ 0.8
LINC00339-211ENST00000641009 PPIP5K1Q6PFW1 1433 aa20.03■□□□□ 0.8
LINC00339-211ENST00000641009 PLEKHG3A1L390 1219 aa20.03■□□□□ 0.8
LINC00339-211ENST00000641009 NUTM2GQ5VZR2 741 aa20.03■□□□□ 0.8
LINC00339-211ENST00000641009 CABP2Q9NPB3 220 aa20.03■□□□□ 0.8
LINC00339-211ENST00000641009 ONECUT3O60422 494 aaPredicted RBP20.01■□□□□ 0.79
LINC00339-211ENST00000641009 PRDM11Q9NQV5 511 aa20■□□□□ 0.79
LINC00339-211ENST00000641009 NRKQ7Z2Y5 1582 aa20■□□□□ 0.79
LINC00339-211ENST00000641009 KIAA0232Q92628 1395 aa20■□□□□ 0.79
LINC00339-211ENST00000641009 ROCK2O75116 1388 aaKnown RBP19.99■□□□□ 0.79
LINC00339-211ENST00000641009 FAM98CQ17RN3 349 aaKnown RBP19.99■□□□□ 0.79
LINC00339-211ENST00000641009 CCDC125Q86Z20 511 aa19.99■□□□□ 0.79
LINC00339-211ENST00000641009 A0A0G2JS52 829 aa19.98■□□□□ 0.79
LINC00339-211ENST00000641009 ZC3H6P61129 1189 aaKnown RBP19.98■□□□□ 0.79
LINC00339-211ENST00000641009 MYT1Q01538 1121 aa19.98■□□□□ 0.79
LINC00339-211ENST00000641009 CHRNA2Q15822 529 aa19.98■□□□□ 0.79
LINC00339-211ENST00000641009 ABTB2Q8N961 1025 aa19.97■□□□□ 0.79
LINC00339-211ENST00000641009 BLMP54132 1417 aaPredicted RBP19.96■□□□□ 0.79
LINC00339-211ENST00000641009 KRT27Q7Z3Y8 459 aa19.96■□□□□ 0.79
LINC00339-211ENST00000641009 THSD7AQ9UPZ6 1657 aa19.96■□□□□ 0.79
LINC00339-211ENST00000641009 SPATA31A5Q5VU36 1347 aa19.95■□□□□ 0.78
LINC00339-211ENST00000641009 SPATA31A7Q8IWB4 1347 aa19.95■□□□□ 0.78
LINC00339-211ENST00000641009 AKAP12Q02952 1782 aa19.95■□□□□ 0.78
LINC00339-211ENST00000641009 CABP1Q9NZU7 370 aa19.94■□□□□ 0.78
LINC00339-211ENST00000641009 LMO7Q8WWI1 1683 aa19.93■□□□□ 0.78
LINC00339-211ENST00000641009 EVC2Q86UK5 1308 aa19.93■□□□□ 0.78
LINC00339-211ENST00000641009 PIK3C2AO00443 1686 aa19.92■□□□□ 0.78
LINC00339-211ENST00000641009 USP6P35125 1406 aa19.92■□□□□ 0.78
LINC00339-211ENST00000641009 USP19O94966 1318 aa19.92■□□□□ 0.78
LINC00339-211ENST00000641009 STRN4Q9NRL3 753 aa19.92■□□□□ 0.78
LINC00339-211ENST00000641009 CAMTA1Q9Y6Y1 1673 aa19.91■□□□□ 0.78
LINC00339-211ENST00000641009 DEFB132Q7Z7B7 95 aa19.9■□□□□ 0.78
LINC00339-211ENST00000641009 NLRP13Q86W25 1043 aa19.9■□□□□ 0.78
LINC00339-211ENST00000641009 SPATA31A1Q5TZJ5 1347 aa19.9■□□□□ 0.78
LINC00339-211ENST00000641009 RGPD1P0DJD0 1748 aa19.9■□□□□ 0.78
LINC00339-211ENST00000641009 BRD4O60885 1362 aaPredicted RBP19.89■□□□□ 0.77
LINC00339-211ENST00000641009 CPDO75976 1380 aa19.89■□□□□ 0.77
LINC00339-211ENST00000641009 SF3B2Q13435 895 aaKnown RBP19.88■□□□□ 0.77
LINC00339-211ENST00000641009 FAM182BQ5T319 152 aa19.88■□□□□ 0.77
LINC00339-211ENST00000641009 ZRANB1Q9UGI0 708 aa19.88■□□□□ 0.77
LINC00339-211ENST00000641009 SSH2Q76I76 1423 aa19.88■□□□□ 0.77
LINC00339-211ENST00000641009 GCP02774 474 aa19.87■□□□□ 0.77
LINC00339-211ENST00000641009 EVA1CP58658 441 aa19.86■□□□□ 0.77
LINC00339-211ENST00000641009 USP35Q9P2H5 1018 aa19.86■□□□□ 0.77
LINC00339-211ENST00000641009 TNS1Q9HBL0 1735 aaKnown RBP19.86■□□□□ 0.77
LINC00339-211ENST00000641009 TONSLQ96HA7 1378 aa19.86■□□□□ 0.77
LINC00339-211ENST00000641009 SLIT3O75094 1523 aa19.86■□□□□ 0.77
LINC00339-211ENST00000641009 MON2Q7Z3U7 1717 aa19.86■□□□□ 0.77
LINC00339-211ENST00000641009 RGPD5Q99666 1765 aa19.86■□□□□ 0.77
LINC00339-211ENST00000641009 NLRP6P59044 892 aa19.86■□□□□ 0.77
LINC00339-211ENST00000641009 COL18A1P39060 1754 aa19.84■□□□□ 0.77
LINC00339-211ENST00000641009 LARP1Q6PKG0 1096 aaKnown RBP19.84■□□□□ 0.77
LINC00339-211ENST00000641009 CARD11Q9BXL7 1154 aa19.84■□□□□ 0.77
LINC00339-211ENST00000641009 COL5A2P05997 1499 aaPredicted RBP19.82■□□□□ 0.76
LINC00339-211ENST00000641009 ZBTB7CA1YPR0 619 aa19.82■□□□□ 0.76
LINC00339-211ENST00000641009 TRIM26Q12899 539 aaPredicted RBP19.82■□□□□ 0.76
LINC00339-211ENST00000641009 SBNO2Q9Y2G9 1366 aa19.81■□□□□ 0.76
LINC00339-211ENST00000641009 TTC21BQ7Z4L5 1316 aa19.8■□□□□ 0.76
LINC00339-211ENST00000641009 ZNF692Q9BU19 519 aaPredicted RBP19.8■□□□□ 0.76
LINC00339-211ENST00000641009 PARP4Q9UKK3 1724 aaKnown RBP19.8■□□□□ 0.76
LINC00339-211ENST00000641009 CPSF1Q10570 1443 aaKnown RBP19.8■□□□□ 0.76
LINC00339-211ENST00000641009 WNK3Q9BYP7 1800 aa19.79■□□□□ 0.76
LINC00339-211ENST00000641009 BAG6P46379 1132 aa19.79■□□□□ 0.76
LINC00339-211ENST00000641009 BARGINQ6ZT62 677 aa19.79■□□□□ 0.76
LINC00339-211ENST00000641009 KTN1Q86UP2 1357 aaKnown RBP19.78■□□□□ 0.76
LINC00339-211ENST00000641009 TCP11L2Q8N4U5 519 aa19.78■□□□□ 0.76
LINC00339-211ENST00000641009 AATKQ6ZMQ8 1374 aa19.77■□□□□ 0.76
LINC00339-211ENST00000641009 CD163L1Q9NR16 1453 aa19.76■□□□□ 0.75
LINC00339-211ENST00000641009 TTC21AQ8NDW8 1320 aa19.76■□□□□ 0.75
LINC00339-211ENST00000641009 CRB1P82279 1406 aa19.75■□□□□ 0.75
LINC00339-211ENST00000641009 USP54Q70EL1 1684 aa19.75■□□□□ 0.75
LINC00339-211ENST00000641009 SOX12O15370 315 aa19.75■□□□□ 0.75
LINC00339-211ENST00000641009 EN1Q05925 392 aaPredicted RBP19.75■□□□□ 0.75
LINC00339-211ENST00000641009 NFAT5O94916 1531 aa19.75■□□□□ 0.75
LINC00339-211ENST00000641009 LTN1O94822 1766 aa19.75■□□□□ 0.75
LINC00339-211ENST00000641009 THRAP3Q9Y2W1 955 aaKnown RBP19.74■□□□□ 0.75
LINC00339-211ENST00000641009 LRRC37A3O60309 1634 aa19.74■□□□□ 0.75
LINC00339-211ENST00000641009 TRIM37O94972 964 aa19.73■□□□□ 0.75
LINC00339-211ENST00000641009 PDE3BQ13370 1112 aa19.73■□□□□ 0.75
LINC00339-211ENST00000641009 FAM196AQ6ZSG2 479 aa19.73■□□□□ 0.75
LINC00339-211ENST00000641009 AXIN2Q9Y2T1 843 aa19.73■□□□□ 0.75
LINC00339-211ENST00000641009 DISP2A7MBM2 1401 aa19.73■□□□□ 0.75
LINC00339-211ENST00000641009 SBF2Q86WG5 1849 aa19.73■□□□□ 0.75
LINC00339-211ENST00000641009 KCNH5Q8NCM2 988 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms