RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 Q8N3U1 123 aa2.48□□□□□ -2.01
VPS35-212ENST00000640313 WHAMMQ8TF30 809 aa2.48□□□□□ -2.01
VPS35-212ENST00000640313 NLRP7Q8WX94 980 aa2.48□□□□□ -2.01
VPS35-212ENST00000640313 CDK15Q96Q40 435 aa2.48□□□□□ -2.01
VPS35-212ENST00000640313 SPOCK3Q9BQ16 436 aa2.48□□□□□ -2.01
VPS35-212ENST00000640313 EVA1BQ9NVM1 165 aa2.48□□□□□ -2.01
VPS35-212ENST00000640313 UPP2O95045 317 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 ZIC2O95409 532 aaPredicted RBP2.47□□□□□ -2.01
VPS35-212ENST00000640313 PROCP04070 461 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 CCNYL3P0C7X3 344 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 ZNF800Q2TB10 664 aaPredicted RBP eCLIP2.47□□□□□ -2.01
VPS35-212ENST00000640313 C6orf118Q5T5N4 469 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 RETREG3Q86VR2 466 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 KCNV2Q8TDN2 545 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 BAP1Q92560 729 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 DCAF5Q96JK2 942 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 ZBTB4Q9P1Z0 1013 aaPredicted RBP2.47□□□□□ -2.01
VPS35-212ENST00000640313 DNMT3LQ9UJW3 386 aa2.47□□□□□ -2.01
VPS35-212ENST00000640313 K7ELQ4 463 aaPredicted RBP2.46□□□□□ -2.02
VPS35-212ENST00000640313 SPTLC1O15269 473 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 GPR37O15354 613 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 HOXA2O43364 376 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 BMP2P12643 396 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 PTSQ03393 145 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 NR5A1Q13285 461 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 LINC00528Q8N1L1 170 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 ZNF511Q8NB15 262 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 FAM174AQ8TBP5 190 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 HLA-CQ95604 372 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 ITPKCQ96DU7 683 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 UNC93B1Q9H1C4 597 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 ZFAND3Q9H8U3 227 aa2.46□□□□□ -2.02
VPS35-212ENST00000640313 SLC35F4A4IF30 521 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 PHF20L1A8MW92 1017 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 MS4A1P11836 297 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 GRM5P41594 1212 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 KCNH2Q12809 1159 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 PTPRNQ16849 979 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 LINC01559Q495D7 138 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 LCE3BQ5TA77 95 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 LYPD4Q6UWN0 246 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 SV2AQ7L0J3 742 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 MEIOBQ8N635 442 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 CCDC155Q8N6L0 562 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 BEND7Q8N7W2 519 aaPredicted RBP2.45□□□□□ -2.02
VPS35-212ENST00000640313 SYMPKQ92797 1274 aaKnown RBP2.45□□□□□ -2.02
VPS35-212ENST00000640313 KRTAP4-12Q9BQ66 201 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 TSEN34Q9BSV6 310 aaKnown RBP2.45□□□□□ -2.02
VPS35-212ENST00000640313 ENAMQ9NRM1 1142 aa2.45□□□□□ -2.02
VPS35-212ENST00000640313 TTLL8A6PVC2 850 aa2.44□□□□□ -2.02
VPS35-212ENST00000640313 SEMA3EO15041 775 aa2.44□□□□□ -2.02
VPS35-212ENST00000640313 ADAMTS2O95450 1211 aa2.44□□□□□ -2.02
VPS35-212ENST00000640313 CELA2BP08218 269 aaPredicted RBP2.44□□□□□ -2.02
VPS35-212ENST00000640313 NR3C2P08235 984 aa2.44□□□□□ -2.02
VPS35-212ENST00000640313 GUCA2AQ02747 115 aa2.44□□□□□ -2.02
VPS35-212ENST00000640313 MAP3K10Q02779 954 aa2.44□□□□□ -2.02
VPS35-212ENST00000640313 SRSF11Q05519 484 aaKnown RBP2.44□□□□□ -2.02
VPS35-212ENST00000640313 RBM26Q5T8P6 1007 aaKnown RBP2.44□□□□□ -2.02
VPS35-212ENST00000640313 VWA5B2Q8N398 1253 aa2.44□□□□□ -2.02
VPS35-212ENST00000640313 GALNT6Q8NCL4 622 aa2.44□□□□□ -2.02
VPS35-212ENST00000640313 CNTNAP5Q8WYK1 1306 aa2.43□□□□□ -2.02
VPS35-212ENST00000640313 ITGA6P23229 1130 aa2.43□□□□□ -2.02
VPS35-212ENST00000640313 SMYD5Q6GMV2 418 aa2.43□□□□□ -2.02
VPS35-212ENST00000640313 DESI1Q6ICB0 168 aa2.43□□□□□ -2.02
VPS35-212ENST00000640313 PAXIP1Q6ZW49 1069 aaPredicted RBP2.43□□□□□ -2.02
VPS35-212ENST00000640313 TESPA1A2RU30 521 aaPredicted RBP2.42□□□□□ -2.02
VPS35-212ENST00000640313 BAG6P46379 1132 aa2.42□□□□□ -2.02
VPS35-212ENST00000640313 CFAP44Q96MT7 982 aa2.42□□□□□ -2.02
VPS35-212ENST00000640313 KRTAP9-9Q9BYP9 154 aa2.42□□□□□ -2.02
VPS35-212ENST00000640313 KRTAP9-4Q9BYQ2 154 aa2.42□□□□□ -2.02
VPS35-212ENST00000640313 KRTAP4-8A0A0G2JLE6 195 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 CDC14CA4D256 554 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 SPDYE5A6NIY4 337 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 FIGNL2A6NMB9 653 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 BTBD11A6QL63 1104 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 C6orf229H3BNL8 230 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 SPINT1O43278 529 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 FDX1P10109 184 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 ARID5BQ14865 1188 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 PODNQ7Z5L7 613 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 ALYREFQ86V81 257 aaKnown RBP2.41□□□□□ -2.02
VPS35-212ENST00000640313 P3H3Q8IVL6 736 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 FOXJ1Q92949 421 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 LRRC4BQ9NT99 713 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 PCDHGC3Q9UN70 934 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 EMILIN1Q9Y6C2 1016 aa2.41□□□□□ -2.02
VPS35-212ENST00000640313 KRBA1A5PL33 1030 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 BCRP11274 1271 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 GAS6Q14393 721 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 C4orf48Q5BLP8 95 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 LYPD8Q6UX82 237 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 Q6ZVU0 165 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 SH3RF1Q7Z6J0 888 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 NUTM1Q86Y26 1132 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 PRR7Q8TB68 274 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 MAP4K5Q9Y4K4 846 aa2.4□□□□□ -2.03
VPS35-212ENST00000640313 SENP3-EIF4A1A0A087X0R7 540 aa2.39□□□□□ -2.03
VPS35-212ENST00000640313 FURINP09958 794 aa2.39□□□□□ -2.03
VPS35-212ENST00000640313 MDM2Q00987 491 aaPredicted RBP2.39□□□□□ -2.03
VPS35-212ENST00000640313 BPHLQ86WA6 291 aaPredicted RBP2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms