RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 BCL9LQ86UU0 1499 aa19.62■□□□□ 0.73
PNKP-228ENST00000637325 PPIP5K1Q6PFW1 1433 aa19.62■□□□□ 0.73
PNKP-228ENST00000637325 POLR3AO14802 1390 aaPredicted RBP19.62■□□□□ 0.73
PNKP-228ENST00000637325 UNC5CLQ8IV45 518 aa19.62■□□□□ 0.73
PNKP-228ENST00000637325 PLCH1Q4KWH8 1693 aa19.62■□□□□ 0.73
PNKP-228ENST00000637325 PCGF6Q9BYE7 350 aa19.61■□□□□ 0.73
PNKP-228ENST00000637325 NWD2Q9ULI1 1742 aa19.61■□□□□ 0.73
PNKP-228ENST00000637325 RGS12O14924 1447 aa19.6■□□□□ 0.73
PNKP-228ENST00000637325 SLIT2O94813 1529 aa19.6■□□□□ 0.73
PNKP-228ENST00000637325 RALGAPBQ86X10 1494 aa19.6■□□□□ 0.73
PNKP-228ENST00000637325 CABP1Q9NZU7 370 aa19.59■□□□□ 0.73
PNKP-228ENST00000637325 FAM83GA6ND36 823 aa19.58■□□□□ 0.72
PNKP-228ENST00000637325 NUTM2GQ5VZR2 741 aa19.58■□□□□ 0.72
PNKP-228ENST00000637325 GJD4Q96KN9 370 aaPredicted RBP19.58■□□□□ 0.72
PNKP-228ENST00000637325 CRYBG1Q9Y4K1 1723 aa19.57■□□□□ 0.72
PNKP-228ENST00000637325 ABTB2Q8N961 1025 aa19.57■□□□□ 0.72
PNKP-228ENST00000637325 CCDC9Q9Y3X0 531 aaKnown RBP19.56■□□□□ 0.72
PNKP-228ENST00000637325 COL14A1Q05707 1796 aaKnown RBP19.56■□□□□ 0.72
PNKP-228ENST00000637325 PHRF1Q9P1Y6 1649 aaKnown RBP19.54■□□□□ 0.72
PNKP-228ENST00000637325 UPF1Q92900 1129 aaKnown RBP eCLIP19.54■□□□□ 0.72
PNKP-228ENST00000637325 VPS72Q15906 364 aa19.53■□□□□ 0.72
PNKP-228ENST00000637325 PRDM11Q9NQV5 511 aa19.53■□□□□ 0.72
PNKP-228ENST00000637325 BTG4Q9NY30 223 aa19.53■□□□□ 0.72
PNKP-228ENST00000637325 BRD4O60885 1362 aaPredicted RBP19.52■□□□□ 0.72
PNKP-228ENST00000637325 ATAD2Q6PL18 1390 aa19.52■□□□□ 0.72
PNKP-228ENST00000637325 AKAP12Q02952 1782 aa19.52■□□□□ 0.71
PNKP-228ENST00000637325 NLRP13Q86W25 1043 aa19.51■□□□□ 0.71
PNKP-228ENST00000637325 GLI3P10071 1580 aa19.51■□□□□ 0.71
PNKP-228ENST00000637325 NRAPQ86VF7 1730 aa19.51■□□□□ 0.71
PNKP-228ENST00000637325 SBNO2Q9Y2G9 1366 aa19.5■□□□□ 0.71
PNKP-228ENST00000637325 ZC3H6P61129 1189 aaKnown RBP19.5■□□□□ 0.71
PNKP-228ENST00000637325 ZNF692Q9BU19 519 aaPredicted RBP19.5■□□□□ 0.71
PNKP-228ENST00000637325 USP6P35125 1406 aa19.5■□□□□ 0.71
PNKP-228ENST00000637325 BRWD3Q6RI45 1802 aa19.49■□□□□ 0.71
PNKP-228ENST00000637325 KIAA0232Q92628 1395 aa19.49■□□□□ 0.71
PNKP-228ENST00000637325 CLSPNQ9HAW4 1339 aa19.49■□□□□ 0.71
PNKP-228ENST00000637325 NLRP6P59044 892 aa19.47■□□□□ 0.71
PNKP-228ENST00000637325 CHRNA2Q15822 529 aa19.47■□□□□ 0.71
PNKP-228ENST00000637325 TMC1Q8TDI8 760 aa19.47■□□□□ 0.71
PNKP-228ENST00000637325 TIMELESSQ9UNS1 1208 aa19.46■□□□□ 0.71
PNKP-228ENST00000637325 NRKQ7Z2Y5 1582 aa19.45■□□□□ 0.7
PNKP-228ENST00000637325 ST20-MTHFSA0A0A6YYL1 179 aa19.45■□□□□ 0.7
PNKP-228ENST00000637325 A0A0G2JS52 829 aa19.45■□□□□ 0.7
PNKP-228ENST00000637325 MYT1Q01538 1121 aa19.45■□□□□ 0.7
PNKP-228ENST00000637325 USP19O94966 1318 aa19.45■□□□□ 0.7
PNKP-228ENST00000637325 SLC24A1O60721 1099 aa19.44■□□□□ 0.7
PNKP-228ENST00000637325 GCP02774 474 aa19.44■□□□□ 0.7
PNKP-228ENST00000637325 EVA1CP58658 441 aa19.44■□□□□ 0.7
PNKP-228ENST00000637325 SEPT12Q8IYM1 358 aa19.44■□□□□ 0.7
PNKP-228ENST00000637325 CCER1Q8TC90 406 aaPredicted RBP19.44■□□□□ 0.7
PNKP-228ENST00000637325 STRN4Q9NRL3 753 aa19.44■□□□□ 0.7
PNKP-228ENST00000637325 KTN1Q86UP2 1357 aaKnown RBP19.44■□□□□ 0.7
PNKP-228ENST00000637325 TTC21BQ7Z4L5 1316 aa19.43■□□□□ 0.7
PNKP-228ENST00000637325 PIK3C2AO00443 1686 aa19.43■□□□□ 0.7
PNKP-228ENST00000637325 MON2Q7Z3U7 1717 aa19.42■□□□□ 0.7
PNKP-228ENST00000637325 ZBTB7CA1YPR0 619 aa19.42■□□□□ 0.7
PNKP-228ENST00000637325 SSH2Q76I76 1423 aa19.42■□□□□ 0.7
PNKP-228ENST00000637325 FAM98CQ17RN3 349 aaKnown RBP19.41■□□□□ 0.7
PNKP-228ENST00000637325 HDGFL2Q7Z4V5 671 aaPredicted RBP19.41■□□□□ 0.7
PNKP-228ENST00000637325 TTC21AQ8NDW8 1320 aa19.41■□□□□ 0.7
PNKP-228ENST00000637325 CPDO75976 1380 aa19.41■□□□□ 0.7
PNKP-228ENST00000637325 CPSF1Q10570 1443 aaKnown RBP19.41■□□□□ 0.7
PNKP-228ENST00000637325 ONECUT3O60422 494 aaPredicted RBP19.4■□□□□ 0.7
PNKP-228ENST00000637325 PUS7Q96PZ0 661 aaKnown RBP19.4■□□□□ 0.7
PNKP-228ENST00000637325 SLC12A5Q9H2X9 1139 aa19.4■□□□□ 0.7
PNKP-228ENST00000637325 SPATA31A5Q5VU36 1347 aa19.4■□□□□ 0.7
PNKP-228ENST00000637325 SPATA31A7Q8IWB4 1347 aa19.4■□□□□ 0.7
PNKP-228ENST00000637325 TESK2Q96S53 571 aa19.39■□□□□ 0.69
PNKP-228ENST00000637325 USP47Q96K76 1375 aa19.39■□□□□ 0.69
PNKP-228ENST00000637325 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.38■□□□□ 0.69
PNKP-228ENST00000637325 TERF2IPQ9NYB0 399 aa19.38■□□□□ 0.69
PNKP-228ENST00000637325 SLIT3O75094 1523 aa19.37■□□□□ 0.69
PNKP-228ENST00000637325 KRT27Q7Z3Y8 459 aa19.37■□□□□ 0.69
PNKP-228ENST00000637325 SOX12O15370 315 aa19.36■□□□□ 0.69
PNKP-228ENST00000637325 TMF1P82094 1093 aa19.36■□□□□ 0.69
PNKP-228ENST00000637325 KCNH5Q8NCM2 988 aa19.36■□□□□ 0.69
PNKP-228ENST00000637325 EP400Q96L91 3159 aa19.36■□□□□ 0.69
PNKP-228ENST00000637325 LMO7Q8WWI1 1683 aa19.36■□□□□ 0.69
PNKP-228ENST00000637325 CAMTA1Q9Y6Y1 1673 aa19.36■□□□□ 0.69
PNKP-228ENST00000637325 SPATA31A1Q5TZJ5 1347 aa19.35■□□□□ 0.69
PNKP-228ENST00000637325 CCDC125Q86Z20 511 aa19.35■□□□□ 0.69
PNKP-228ENST00000637325 USP35Q9P2H5 1018 aa19.35■□□□□ 0.69
PNKP-228ENST00000637325 RGPD5Q99666 1765 aa19.34■□□□□ 0.69
PNKP-228ENST00000637325 CD163L1Q9NR16 1453 aa19.34■□□□□ 0.69
PNKP-228ENST00000637325 NINLQ9Y2I6 1382 aa19.33■□□□□ 0.69
PNKP-228ENST00000637325 LARP1Q6PKG0 1096 aaKnown RBP19.33■□□□□ 0.68
PNKP-228ENST00000637325 A0A1W2PP64 1363 aa19.32■□□□□ 0.68
PNKP-228ENST00000637325 AATKQ6ZMQ8 1374 aa19.32■□□□□ 0.68
PNKP-228ENST00000637325 SF3B2Q13435 895 aaKnown RBP19.31■□□□□ 0.68
PNKP-228ENST00000637325 CDCA8Q53HL2 280 aa19.31■□□□□ 0.68
PNKP-228ENST00000637325 NME9Q86XW9 330 aa19.31■□□□□ 0.68
PNKP-228ENST00000637325 ZRANB1Q9UGI0 708 aa19.31■□□□□ 0.68
PNKP-228ENST00000637325 EDC4Q6P2E9 1401 aaKnown RBP19.31■□□□□ 0.68
PNKP-228ENST00000637325 COL18A1P39060 1754 aa19.31■□□□□ 0.68
PNKP-228ENST00000637325 THSD7AQ9UPZ6 1657 aa19.3■□□□□ 0.68
PNKP-228ENST00000637325 TCP11L2Q8N4U5 519 aa19.3■□□□□ 0.68
PNKP-228ENST00000637325 COL5A2P05997 1499 aaPredicted RBP19.29■□□□□ 0.68
PNKP-228ENST00000637325 ARHGEF25Q86VW2 580 aa19.29■□□□□ 0.68
PNKP-228ENST00000637325 USP31Q70CQ4 1352 aa19.29■□□□□ 0.68
PNKP-228ENST00000637325 BLMP54132 1417 aaPredicted RBP19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms