RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 ROBO1Q9Y6N7 1651 aa28.1■■■□□ 2.09
CLN3-245ENST00000636172 TRPM3Q9HCF6 1732 aaPredicted RBP28.09■■■□□ 2.09
CLN3-245ENST00000636172 BRD4O60885 1362 aaPredicted RBP28.09■■■□□ 2.09
CLN3-245ENST00000636172 PRKRIP1Q9H875 184 aaPredicted RBP28.08■■■□□ 2.09
CLN3-245ENST00000636172 ANKRD26Q9UPS8 1709 aa28.08■■■□□ 2.09
CLN3-245ENST00000636172 NSD2O96028 1365 aa28.08■■■□□ 2.09
CLN3-245ENST00000636172 FYB1O15117 783 aa28.08■■■□□ 2.08
CLN3-245ENST00000636172 DDX17Q92841 729 aaKnown RBP28.08■■■□□ 2.08
CLN3-245ENST00000636172 NHSL1Q5SYE7 1610 aa28.07■■■□□ 2.08
CLN3-245ENST00000636172 NPHP3Q7Z494 1330 aa28.07■■■□□ 2.08
CLN3-245ENST00000636172 XPCQ01831 940 aaPredicted RBP28.07■■■□□ 2.08
CLN3-245ENST00000636172 PXDNQ92626 1479 aa28.06■■■□□ 2.08
CLN3-245ENST00000636172 TTC21AQ8NDW8 1320 aa28.06■■■□□ 2.08
CLN3-245ENST00000636172 PIK3C2AO00443 1686 aa28.06■■■□□ 2.08
CLN3-245ENST00000636172 TOM1O60784 492 aa28.06■■■□□ 2.08
CLN3-245ENST00000636172 NME9Q86XW9 330 aa28.06■■■□□ 2.08
CLN3-245ENST00000636172 PARD3Q8TEW0 1356 aa28.06■■■□□ 2.08
CLN3-245ENST00000636172 UBAP1LF5GYI3 381 aa28.05■■■□□ 2.08
CLN3-245ENST00000636172 KRT28Q7Z3Y7 464 aa28.05■■■□□ 2.08
CLN3-245ENST00000636172 MIER1Q8N108 512 aa28.04■■■□□ 2.08
CLN3-245ENST00000636172 GGNBP2Q9H3C7 697 aa28.04■■■□□ 2.08
CLN3-245ENST00000636172 PAK3O75914 559 aaPredicted RBP28.01■■■□□ 2.07
CLN3-245ENST00000636172 RALBP1Q15311 655 aa28.01■■■□□ 2.07
CLN3-245ENST00000636172 ZRANB1Q9UGI0 708 aa28.01■■■□□ 2.07
CLN3-245ENST00000636172 ALS2Q96Q42 1657 aa28■■■□□ 2.07
CLN3-245ENST00000636172 AHDC1Q5TGY3 1603 aaPredicted RBP27.99■■■□□ 2.07
CLN3-245ENST00000636172 USP54Q70EL1 1684 aa27.99■■■□□ 2.07
CLN3-245ENST00000636172 SBNO1A3KN83 1393 aa27.99■■■□□ 2.07
CLN3-245ENST00000636172 OVOS2A0A0J9YW53 1432 aa27.98■■■□□ 2.07
CLN3-245ENST00000636172 OVOS2Q6IE36 1432 aa27.98■■■□□ 2.07
CLN3-245ENST00000636172 MARF1Q9Y4F3 1742 aaKnown RBP27.98■■■□□ 2.07
CLN3-245ENST00000636172 SOS2Q07890 1332 aaPredicted RBP27.98■■■□□ 2.07
CLN3-245ENST00000636172 MORC1Q86VD1 984 aa27.97■■■□□ 2.07
CLN3-245ENST00000636172 PIP4K2BP78356 416 aa27.97■■■□□ 2.07
CLN3-245ENST00000636172 USP31Q70CQ4 1352 aa27.96■■■□□ 2.07
CLN3-245ENST00000636172 ABTB2Q8N961 1025 aa27.96■■■□□ 2.07
CLN3-245ENST00000636172 TNS3Q68CZ2 1445 aa27.95■■■□□ 2.06
CLN3-245ENST00000636172 COG3Q96JB2 828 aa27.94■■■□□ 2.06
CLN3-245ENST00000636172 MYBBP1AQ9BQG0 1328 aaKnown RBP27.92■■■□□ 2.06
CLN3-245ENST00000636172 SPATA31A3Q5VYP0 1347 aa27.92■■■□□ 2.06
CLN3-245ENST00000636172 SCAF1Q9H7N4 1312 aaKnown RBP27.92■■■□□ 2.06
CLN3-245ENST00000636172 NLRP6P59044 892 aa27.92■■■□□ 2.06
CLN3-245ENST00000636172 NUTM2GQ5VZR2 741 aa27.92■■■□□ 2.06
CLN3-245ENST00000636172 TNNT2P45379 298 aaPredicted RBP27.91■■■□□ 2.06
CLN3-245ENST00000636172 PHLPP1O60346 1717 aa27.89■■■□□ 2.06
CLN3-245ENST00000636172 PPP2R1AP30153 589 aa27.89■■■□□ 2.06
CLN3-245ENST00000636172 LMOD2Q6P5Q4 547 aa27.89■■■□□ 2.06
CLN3-245ENST00000636172 ARHGEF10O15013 1369 aa27.87■■■□□ 2.05
CLN3-245ENST00000636172 COL16A1Q07092 1604 aaPredicted RBP27.87■■■□□ 2.05
CLN3-245ENST00000636172 NLRP13Q86W25 1043 aa27.86■■■□□ 2.05
CLN3-245ENST00000636172 SLIT3O75094 1523 aa27.84■■■□□ 2.05
CLN3-245ENST00000636172 MED1Q15648 1581 aaPredicted RBP27.84■■■□□ 2.05
CLN3-245ENST00000636172 USP19O94966 1318 aa27.84■■■□□ 2.05
CLN3-245ENST00000636172 CRYBG1Q9Y4K1 1723 aa27.83■■■□□ 2.05
CLN3-245ENST00000636172 CCER2I3L3R5 266 aa27.83■■■□□ 2.05
CLN3-245ENST00000636172 AATKQ6ZMQ8 1374 aa27.83■■■□□ 2.05
CLN3-245ENST00000636172 FBLN1P23142 703 aa27.82■■■□□ 2.04
CLN3-245ENST00000636172 MAP2P11137 1827 aaKnown RBP27.82■■■□□ 2.04
CLN3-245ENST00000636172 CCDC184Q52MB2 194 aa27.82■■■□□ 2.04
CLN3-245ENST00000636172 PHRF1Q9P1Y6 1649 aaKnown RBP27.81■■■□□ 2.04
CLN3-245ENST00000636172 NFAT5O94916 1531 aa27.81■■■□□ 2.04
CLN3-245ENST00000636172 LRRC59Q96AG4 307 aaKnown RBP27.8■■■□□ 2.04
CLN3-245ENST00000636172 SOX12O15370 315 aa27.79■■■□□ 2.04
CLN3-245ENST00000636172 HSPA1LP34931 641 aa27.79■■■□□ 2.04
CLN3-245ENST00000636172 SMG6Q86US8 1419 aaKnown RBP27.78■■■□□ 2.04
CLN3-245ENST00000636172 POLKQ9UBT6 870 aa27.77■■■□□ 2.04
CLN3-245ENST00000636172 PLEKHG5O94827 1062 aa27.77■■■□□ 2.04
CLN3-245ENST00000636172 MTHFSP49914 203 aa27.77■■■□□ 2.04
CLN3-245ENST00000636172 ABCA3Q99758 1704 aa27.77■■■□□ 2.04
CLN3-245ENST00000636172 RRS1Q15050 365 aaKnown RBP27.76■■■□□ 2.03
CLN3-245ENST00000636172 GCP02774 474 aa27.75■■■□□ 2.03
CLN3-245ENST00000636172 KCNH5Q8NCM2 988 aa27.75■■■□□ 2.03
CLN3-245ENST00000636172 MRS2Q9HD23 443 aa27.75■■■□□ 2.03
CLN3-245ENST00000636172 COL22A1Q8NFW1 1626 aaPredicted RBP27.75■■■□□ 2.03
CLN3-245ENST00000636172 ILDR2Q71H61 639 aa27.74■■■□□ 2.03
CLN3-245ENST00000636172 CABLES1Q8TDN4 633 aa27.74■■■□□ 2.03
CLN3-245ENST00000636172 EMILIN1Q9Y6C2 1016 aa27.74■■■□□ 2.03
CLN3-245ENST00000636172 PNPLA6Q8IY17 1366 aa27.74■■■□□ 2.03
CLN3-245ENST00000636172 PEAK1Q9H792 1746 aa27.73■■■□□ 2.03
CLN3-245ENST00000636172 LTN1O94822 1766 aa27.73■■■□□ 2.03
CLN3-245ENST00000636172 MAP3K19Q56UN5 1328 aa27.72■■■□□ 2.03
CLN3-245ENST00000636172 CDK12Q9NYV4 1490 aaPredicted RBP27.71■■■□□ 2.03
CLN3-245ENST00000636172 PPM1GO15355 546 aaPredicted RBP27.69■■■□□ 2.02
CLN3-245ENST00000636172 COL3A1P02461 1466 aaPredicted RBP27.69■■■□□ 2.02
CLN3-245ENST00000636172 SHPRHQ149N8 1683 aa27.68■■■□□ 2.02
CLN3-245ENST00000636172 INSRP06213 1382 aa27.66■■■□□ 2.02
CLN3-245ENST00000636172 ARHGEF25Q86VW2 580 aa27.66■■■□□ 2.02
CLN3-245ENST00000636172 CFAP53Q96M91 514 aa27.66■■■□□ 2.02
CLN3-245ENST00000636172 KIF24Q5T7B8 1368 aa27.65■■■□□ 2.02
CLN3-245ENST00000636172 FLT4P35916 1363 aa27.65■■■□□ 2.02
CLN3-245ENST00000636172 ZC3H6P61129 1189 aaKnown RBP27.64■■■□□ 2.02
CLN3-245ENST00000636172 RTL1A6NKG5 1358 aa27.64■■■□□ 2.01
CLN3-245ENST00000636172 AMPHP49418 695 aa27.62■■■□□ 2.01
CLN3-245ENST00000636172 CPDO75976 1380 aa27.62■■■□□ 2.01
CLN3-245ENST00000636172 JCADQ9P266 1359 aa27.62■■■□□ 2.01
CLN3-245ENST00000636172 HAP1P54257 671 aaPredicted RBP27.62■■■□□ 2.01
CLN3-245ENST00000636172 PNISRQ8TF01 805 aaKnown RBP27.62■■■□□ 2.01
CLN3-245ENST00000636172 KIAA0232Q92628 1395 aa27.61■■■□□ 2.01
CLN3-245ENST00000636172 HOXC9P31274 260 aa27.61■■■□□ 2.01
CLN3-245ENST00000636172 ZBTB7CA1YPR0 619 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms