RNA–Protein interactions for RNA: ENST00000624341.3

ERCC6-213, Transcript of ERCC excision repair 6, chromatin remodeling factor, humanhuman

TSL 1 (best)

Gene ERCC6, Length 5,761 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC6-213ENST00000624341 C9orf78Q9NZ63 289 aaPredicted RBP6.84□□□□□ -1.31
ERCC6-213ENST00000624341 CCDC39Q9UFE4 941 aa6.84□□□□□ -1.32
ERCC6-213ENST00000624341 FOSBP53539 338 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.83□□□□□ -1.32
ERCC6-213ENST00000624341 TTC37Q6PGP7 1564 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 IFIT2P09913 472 aaKnown RBP6.83□□□□□ -1.32
ERCC6-213ENST00000624341 EXOSC9Q06265 439 aaKnown RBP6.83□□□□□ -1.32
ERCC6-213ENST00000624341 SASS6Q6UVJ0 657 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 PKNOX2Q96KN3 472 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 C1orf115Q9H7X2 142 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 RRBP1Q9P2E9 1410 aaKnown RBP6.83□□□□□ -1.32
ERCC6-213ENST00000624341 NEK4P51957 841 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 PDE3AQ14432 1141 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 RIMS1Q86UR5 1692 aaKnown RBP6.83□□□□□ -1.32
ERCC6-213ENST00000624341 GNAI1P63096 354 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 MADDQ8WXG6 1647 aa6.83□□□□□ -1.32
ERCC6-213ENST00000624341 C9orf84Q5VXU9 1444 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 SMG6Q86US8 1419 aaKnown RBP6.82□□□□□ -1.32
ERCC6-213ENST00000624341 TPM2P07951 284 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 TEFQ10587 303 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 GRPEL1Q9HAV7 217 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 CCDC27Q2M243 656 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 TSR2Q969E8 191 aaKnown RBP6.82□□□□□ -1.32
ERCC6-213ENST00000624341 MAP7D2Q96T17 732 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 PRKCSHP14314 528 aaPredicted RBP6.82□□□□□ -1.32
ERCC6-213ENST00000624341 GPS2Q13227 327 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 MIA2Q96PC5 1412 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 MCM4P33991 863 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 CCDC173Q0VFZ6 552 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 TSR1Q2NL82 804 aaKnown RBP6.82□□□□□ -1.32
ERCC6-213ENST00000624341 TMEM132EQ6IEE7 984 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 ATP10AO60312 1499 aa6.82□□□□□ -1.32
ERCC6-213ENST00000624341 FER1L4A9Z1Z3 1794 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 TROQ12816 1431 aaPredicted RBP6.81□□□□□ -1.32
ERCC6-213ENST00000624341 ESPNB1AK53 854 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 CPLX1O14810 134 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 SUPT6HQ7KZ85 1726 aaKnown RBP6.81□□□□□ -1.32
ERCC6-213ENST00000624341 ARHGAP5Q13017 1502 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 ZNF518AQ6AHZ1 1483 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 CDK13Q14004 1512 aaKnown RBP6.81□□□□□ -1.32
ERCC6-213ENST00000624341 ANKRD50Q9ULJ7 1429 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 RAPGEF3O95398 923 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 TEX35Q5T0J7 233 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 RNF20Q5VTR2 975 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 CABP2Q9NPB3 220 aa6.81□□□□□ -1.32
ERCC6-213ENST00000624341 MBD3O95983 291 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 TPM1P09493 284 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 MTERF4Q7Z6M4 381 aaKnown RBP6.8□□□□□ -1.32
ERCC6-213ENST00000624341 CFAP70Q5T0N1 1121 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 CPLX2Q6PUV4 134 aaKnown RBP6.8□□□□□ -1.32
ERCC6-213ENST00000624341 CCDC73Q6ZRK6 1079 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 TSPYL4Q9UJ04 414 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 SCAPERQ9BY12 1400 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 ROCK1Q13464 1354 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 MNS1Q8NEH6 495 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 TRIM5Q9C035 493 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 NCOA2Q15596 1464 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 ITSN2Q9NZM3 1697 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 REREQ9P2R6 1566 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 FIBPO43427 364 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 RABEP1Q15276 862 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 CHMP4CQ96CF2 233 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 TSPY26PQ9H489 355 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 NOB1Q9ULX3 412 aaKnown RBP6.8□□□□□ -1.32
ERCC6-213ENST00000624341 NEXNQ0ZGT2 675 aa6.8□□□□□ -1.32
ERCC6-213ENST00000624341 G3BP1Q13283 466 aaKnown RBP eCLIP6.8□□□□□ -1.32
ERCC6-213ENST00000624341 TMX4Q9H1E5 349 aaPredicted RBP6.8□□□□□ -1.32
ERCC6-213ENST00000624341 AKAP17AQ02040 695 aaKnown RBP6.79□□□□□ -1.32
ERCC6-213ENST00000624341 SPC24Q8NBT2 197 aa6.79□□□□□ -1.32
ERCC6-213ENST00000624341 C11orf95C9JLR9 678 aaPredicted RBP6.79□□□□□ -1.32
ERCC6-213ENST00000624341 C20orf194Q5TEA3 1177 aa6.79□□□□□ -1.32
ERCC6-213ENST00000624341 C1orf141Q5JVX7 400 aa6.79□□□□□ -1.32
ERCC6-213ENST00000624341 SDF4Q9BRK5 362 aa6.79□□□□□ -1.32
ERCC6-213ENST00000624341 PREX2Q70Z35 1606 aa6.79□□□□□ -1.32
ERCC6-213ENST00000624341 APPP05067 770 aa6.79□□□□□ -1.32
ERCC6-213ENST00000624341 EID1Q9Y6B2 187 aa6.79□□□□□ -1.32
ERCC6-213ENST00000624341 MARCH6O60337 910 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 TRIM29Q14134 588 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 SYNE3Q6ZMZ3 975 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 ILDR1Q86SU0 546 aaPredicted RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 PREX1Q8TCU6 1659 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 K7ELQ4 463 aaPredicted RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 PLEKHH2Q8IVE3 1493 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 PRKAR2BP31323 418 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 SETQ01105 290 aaPredicted RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 SLC12A5Q9H2X9 1139 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 ARGLU1Q9NWB6 273 aaPredicted RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 ERC2O15083 957 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 IPO7O95373 1038 aaKnown RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 HMGN5P82970 282 aaKnown RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 FBXO41Q8TF61 875 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 FMNL2Q96PY5 1086 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 ARHGEF12Q9NZN5 1544 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 SURF6O75683 361 aaKnown RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 UBTFL1P0CB47 393 aaPredicted RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 PCMTD1Q96MG8 357 aaPredicted RBP6.78□□□□□ -1.32
ERCC6-213ENST00000624341 KDM5CP41229 1560 aa6.78□□□□□ -1.32
ERCC6-213ENST00000624341 CCDC70Q6NSX1 233 aa6.77□□□□□ -1.33
ERCC6-213ENST00000624341 GCC1Q96CN9 775 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms