RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PKD2Q13563 968 aa9.77□□□□□ -0.85
VPS11-209ENST00000622309 USP47Q96K76 1375 aa9.77□□□□□ -0.85
VPS11-209ENST00000622309 TSPY4P0CV99 314 aa9.77□□□□□ -0.85
VPS11-209ENST00000622309 TSPY10P0CW01 314 aa9.77□□□□□ -0.85
VPS11-209ENST00000622309 MFAP1P55081 439 aaKnown RBP9.77□□□□□ -0.85
VPS11-209ENST00000622309 JARID2Q92833 1246 aaPredicted RBP9.76□□□□□ -0.85
VPS11-209ENST00000622309 TIGD1Q96MW7 591 aa9.76□□□□□ -0.85
VPS11-209ENST00000622309 EIF3AQ14152 1382 aaKnown RBP9.76□□□□□ -0.85
VPS11-209ENST00000622309 DISP3Q9P2K9 1392 aa9.76□□□□□ -0.85
VPS11-209ENST00000622309 VIRMAQ69YN4 1812 aaKnown RBP9.76□□□□□ -0.85
VPS11-209ENST00000622309 PDLIM2Q96JY6 352 aa9.75□□□□□ -0.85
VPS11-209ENST00000622309 IBTKQ9P2D0 1353 aaPredicted RBP9.75□□□□□ -0.85
VPS11-209ENST00000622309 GCC2Q8IWJ2 1684 aa9.75□□□□□ -0.85
VPS11-209ENST00000622309 KLHL40Q2TBA0 621 aa9.75□□□□□ -0.85
VPS11-209ENST00000622309 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.75□□□□□ -0.859e-6■■■□□ 18.9
VPS11-209ENST00000622309 RAPGEF3O95398 923 aa9.75□□□□□ -0.85
VPS11-209ENST00000622309 RAB3GAP1Q15042 981 aa9.74□□□□□ -0.85
VPS11-209ENST00000622309 GRIPAP1Q4V328 841 aa9.74□□□□□ -0.85
VPS11-209ENST00000622309 ARHGEF40Q8TER5 1519 aa9.74□□□□□ -0.85
VPS11-209ENST00000622309 RIMS1Q86UR5 1692 aaKnown RBP9.74□□□□□ -0.85
VPS11-209ENST00000622309 RGL3Q3MIN7 710 aa9.74□□□□□ -0.85
VPS11-209ENST00000622309 DNMT1P26358 1616 aaKnown RBP9.74□□□□□ -0.85
VPS11-209ENST00000622309 FAM177BA6PVY3 158 aa9.74□□□□□ -0.85
VPS11-209ENST00000622309 U2AF2P26368 475 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS11-209ENST00000622309 MTMR7Q9Y216 660 aa9.74□□□□□ -0.85
VPS11-209ENST00000622309 FANCAO15360 1455 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 PLEKHH2Q8IVE3 1493 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 TRIM6-TRIM34B2RNG4 842 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 ZNF445P59923 1031 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 GOLGA2Q08379 1002 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 DUSP27Q5VZP5 1158 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 ZBTB9Q96C00 473 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 TRIM34Q9BYJ4 488 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 RBSNQ9H1K0 784 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 CGNL1Q0VF96 1302 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 GABPB1Q06547 395 aaPredicted RBP9.73□□□□□ -0.85
VPS11-209ENST00000622309 NGEFQ8N5V2 710 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 CLUAP1Q96AJ1 413 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 FEZ1Q99689 392 aa9.73□□□□□ -0.85
VPS11-209ENST00000622309 NUP155O75694 1391 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 ROCK1Q13464 1354 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 ANKRD30BQ9BXX2 1392 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 ANKRD30AQ9BXX3 1397 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 GTF2F1P35269 517 aaKnown RBP eCLIP9.72□□□□□ -0.85
VPS11-209ENST00000622309 CAVIN1Q6NZI2 390 aaKnown RBP9.72□□□□□ -0.85
VPS11-209ENST00000622309 DMRT2Q9Y5R5 561 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 RAD21O60216 631 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 TSPYL1Q9H0U9 437 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 BCL2L12Q9HB09 334 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 FRMPD1Q5SYB0 1578 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 HSPA2P54652 639 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 SMC5Q8IY18 1101 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 PMFBP1Q8TBY8 1022 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 OGFRQ9NZT2 677 aa9.72□□□□□ -0.85
VPS11-209ENST00000622309 TNNT3P45378 269 aaPredicted RBP9.71□□□□□ -0.85
VPS11-209ENST00000622309 ANAPC15P60006 121 aa9.71□□□□□ -0.85
VPS11-209ENST00000622309 FOXD4L1Q9NU39 408 aa9.71□□□□□ -0.85
VPS11-209ENST00000622309 CALCOCO1Q9P1Z2 691 aa9.71□□□□□ -0.86
VPS11-209ENST00000622309 ANKRD50Q9ULJ7 1429 aa9.71□□□□□ -0.86
VPS11-209ENST00000622309 CHAF1AQ13111 956 aaPredicted RBP9.71□□□□□ -0.86
VPS11-209ENST00000622309 ZSCAN23Q3MJ62 389 aa9.71□□□□□ -0.86
VPS11-209ENST00000622309 CFAP74Q9C0B2 1584 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 NINLQ9Y2I6 1382 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 DDIT3P35638 169 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 CCDC27Q2M243 656 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 ILDR2Q71H61 639 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 SCAPERQ9BY12 1400 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 CLGNO14967 610 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 C9orf84Q5VXU9 1444 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 PDZRN3Q9UPQ7 1066 aa9.7□□□□□ -0.86
VPS11-209ENST00000622309 PRIM1P49642 420 aaKnown RBP9.69□□□□□ -0.86
VPS11-209ENST00000622309 FOXD4L6Q3SYB3 417 aaPredicted RBP9.69□□□□□ -0.86
VPS11-209ENST00000622309 FOXD4L3Q6VB84 417 aaPredicted RBP9.69□□□□□ -0.86
VPS11-209ENST00000622309 RPRD2Q5VT52 1461 aaKnown RBP9.69□□□□□ -0.86
VPS11-209ENST00000622309 MAGI2Q86UL8 1455 aa9.69□□□□□ -0.86
VPS11-209ENST00000622309 BLMP54132 1417 aaPredicted RBP9.69□□□□□ -0.86
VPS11-209ENST00000622309 ZMYM4Q5VZL5 1548 aa9.69□□□□□ -0.86
VPS11-209ENST00000622309 BCAR3O75815 825 aa9.69□□□□□ -0.86
VPS11-209ENST00000622309 COG6Q9Y2V7 657 aa9.69□□□□□ -0.86
VPS11-209ENST00000622309 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.69□□□□□ -0.86
VPS11-209ENST00000622309 SSFA2P28290 1259 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 NOLC1Q14978 699 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS11-209ENST00000622309 EP400NLQ6ZTU2 488 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 SNX21Q969T3 373 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 DIAPH3Q9NSV4 1193 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 INSRP06213 1382 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 ZMYM3Q14202 1370 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 PZPP20742 1482 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 ITSN2Q9NZM3 1697 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 BAG4O95429 457 aaKnown RBP9.68□□□□□ -0.86
VPS11-209ENST00000622309 MCTP1Q6DN14 999 aa9.68□□□□□ -0.86
VPS11-209ENST00000622309 WDR43Q15061 677 aaKnown RBP eCLIP9.67□□□□□ -0.86
VPS11-209ENST00000622309 CC2D1BQ5T0F9 858 aaKnown RBP9.67□□□□□ -0.86
VPS11-209ENST00000622309 CARD11Q9BXL7 1154 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 SPATA31D1Q6ZQQ2 1576 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 CDC42BPAQ5VT25 1732 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 PDE3AQ14432 1141 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 YEATS2Q9ULM3 1422 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 NCOA3Q9Y6Q9 1424 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 PARD3Q8TEW0 1356 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 612.2 ms