RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 CLASRPQ8N2M8 674 aaKnown RBP13.75□□□□□ -0.21
CLIP1-219ENST00000620786 R3HCC1Q9Y3T6 440 aaKnown RBP13.75□□□□□ -0.21
CLIP1-219ENST00000620786 TCP11L2Q8N4U5 519 aa13.75□□□□□ -0.21
CLIP1-219ENST00000620786 SKOR2Q2VWA4 1001 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-219ENST00000620786 CCAR2Q8N163 923 aaKnown RBP13.74□□□□□ -0.21
CLIP1-219ENST00000620786 MYL6BP14649 208 aa13.74□□□□□ -0.21
CLIP1-219ENST00000620786 CCDC158Q5M9N0 1113 aa13.74□□□□□ -0.21
CLIP1-219ENST00000620786 PNISRQ8TF01 805 aaKnown RBP13.74□□□□□ -0.21
CLIP1-219ENST00000620786 ADAMTS8Q9UP79 889 aa13.74□□□□□ -0.21
CLIP1-219ENST00000620786 ERICH3Q5RHP9 1530 aa13.74□□□□□ -0.21
CLIP1-219ENST00000620786 IPO7O95373 1038 aaKnown RBP13.74□□□□□ -0.21
CLIP1-219ENST00000620786 TWISTNBQ3B726 338 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-219ENST00000620786 TROQ12816 1431 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-219ENST00000620786 RBM5P52756 815 aaKnown RBP eCLIP13.74□□□□□ -0.21
CLIP1-219ENST00000620786 ZNF428Q96B54 188 aa13.74□□□□□ -0.21
CLIP1-219ENST00000620786 PPP2R1AP30153 589 aa13.73□□□□□ -0.21
CLIP1-219ENST00000620786 TMEM132AQ24JP5 1023 aa13.73□□□□□ -0.21
CLIP1-219ENST00000620786 HDGFL1Q5TGJ6 251 aa13.73□□□□□ -0.21
CLIP1-219ENST00000620786 SYNJ1O43426 1573 aa13.73□□□□□ -0.21
CLIP1-219ENST00000620786 POLA1P09884 1462 aaPredicted RBP13.73□□□□□ -0.21
CLIP1-219ENST00000620786 PSMA5P28066 241 aa13.72□□□□□ -0.21
CLIP1-219ENST00000620786 NBPF1Q3BBV0 1214 aa13.72□□□□□ -0.21
CLIP1-219ENST00000620786 RRP12Q5JTH9 1297 aaKnown RBP13.72□□□□□ -0.21
CLIP1-219ENST00000620786 SLC12A5Q9H2X9 1139 aa13.72□□□□□ -0.21
CLIP1-219ENST00000620786 CCDC70Q6NSX1 233 aa13.72□□□□□ -0.21
CLIP1-219ENST00000620786 ERC1Q8IUD2 1116 aa13.72□□□□□ -0.21
CLIP1-219ENST00000620786 ATP2B2Q01814 1243 aa13.72□□□□□ -0.21
CLIP1-219ENST00000620786 CDC45O75419 566 aa13.71□□□□□ -0.21
CLIP1-219ENST00000620786 EXOSC9Q06265 439 aaKnown RBP13.71□□□□□ -0.21
CLIP1-219ENST00000620786 BICDL1Q6ZP65 573 aa13.71□□□□□ -0.21
CLIP1-219ENST00000620786 RPGRIP1LQ68CZ1 1315 aa13.71□□□□□ -0.22
CLIP1-219ENST00000620786 KIAA1107Q9UPP5 1409 aa13.71□□□□□ -0.22
CLIP1-219ENST00000620786 ZC3H6P61129 1189 aaKnown RBP13.71□□□□□ -0.22
CLIP1-219ENST00000620786 SLC4A2P04920 1241 aa13.7□□□□□ -0.22
CLIP1-219ENST00000620786 BRD4O60885 1362 aaPredicted RBP13.7□□□□□ -0.22
CLIP1-219ENST00000620786 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.7□□□□□ -0.224e-6■■□□□ 12.7
CLIP1-219ENST00000620786 DNMBPQ6XZF7 1577 aa13.7□□□□□ -0.22
CLIP1-219ENST00000620786 GNAI2P04899 355 aa13.7□□□□□ -0.22
CLIP1-219ENST00000620786 CCDC73Q6ZRK6 1079 aa13.7□□□□□ -0.22
CLIP1-219ENST00000620786 MPHOSPH8Q99549 860 aa13.7□□□□□ -0.22
CLIP1-219ENST00000620786 EPS15P42566 896 aa13.69□□□□□ -0.22
CLIP1-219ENST00000620786 RRS1Q15050 365 aaKnown RBP13.69□□□□□ -0.22
CLIP1-219ENST00000620786 BTBD11A6QL63 1104 aa13.69□□□□□ -0.22
CLIP1-219ENST00000620786 WWC2Q6AWC2 1192 aa13.69□□□□□ -0.22
CLIP1-219ENST00000620786 SIL1Q9H173 461 aa13.69□□□□□ -0.22
CLIP1-219ENST00000620786 HIP1O00291 1037 aa13.69□□□□□ -0.22
CLIP1-219ENST00000620786 HMGXB3Q12766 1538 aa13.68□□□□□ -0.22
CLIP1-219ENST00000620786 CT47A1Q5JQC4 288 aaPredicted RBP13.68□□□□□ -0.22
CLIP1-219ENST00000620786 SASS6Q6UVJ0 657 aa13.68□□□□□ -0.22
CLIP1-219ENST00000620786 STK11IPQ8N1F8 1099 aa13.68□□□□□ -0.22
CLIP1-219ENST00000620786 C1orf115Q9H7X2 142 aa13.68□□□□□ -0.22
CLIP1-219ENST00000620786 AAMPQ13685 434 aa13.68□□□□□ -0.22
CLIP1-219ENST00000620786 ARAP1Q96P48 1450 aa13.68□□□□□ -0.22
CLIP1-219ENST00000620786 CD109Q6YHK3 1445 aa13.68□□□□□ -0.22
CLIP1-219ENST00000620786 CCDC57Q2TAC2 916 aa13.68□□□□□ -0.22
CLIP1-219ENST00000620786 NOB1Q9ULX3 412 aaKnown RBP13.67□□□□□ -0.22
CLIP1-219ENST00000620786 SUPT6HQ7KZ85 1726 aaKnown RBP13.67□□□□□ -0.22
CLIP1-219ENST00000620786 TSR2Q969E8 191 aaKnown RBP13.67□□□□□ -0.22
CLIP1-219ENST00000620786 CDK5RAP3Q96JB5 506 aa13.67□□□□□ -0.22
CLIP1-219ENST00000620786 TSHZ2Q9NRE2 1034 aa13.67□□□□□ -0.22
CLIP1-219ENST00000620786 EPRSP07814 1512 aaKnown RBP13.67□□□□□ -0.22
CLIP1-219ENST00000620786 ODF2Q5BJF6 829 aa13.66□□□□□ -0.22
CLIP1-219ENST00000620786 NAP1L1P55209 391 aaKnown RBP13.66□□□□□ -0.22
CLIP1-219ENST00000620786 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.66□□□□□ -0.221e-9■■■■■ 73.1
CLIP1-219ENST00000620786 DAPK1P53355 1430 aa13.66□□□□□ -0.22
CLIP1-219ENST00000620786 ATAD2Q6PL18 1390 aa13.66□□□□□ -0.22
CLIP1-219ENST00000620786 ZNF592Q92610 1267 aa13.66□□□□□ -0.22
CLIP1-219ENST00000620786 FBXO3Q9UK99 471 aa13.66□□□□□ -0.22
CLIP1-219ENST00000620786 ADAMTS2O95450 1211 aa13.65□□□□□ -0.22
CLIP1-219ENST00000620786 CCT4P50991 539 aaKnown RBP13.65□□□□□ -0.22
CLIP1-219ENST00000620786 HMGB2P26583 209 aaKnown RBP13.65□□□□□ -0.22
CLIP1-219ENST00000620786 KCNH5Q8NCM2 988 aa13.65□□□□□ -0.22
CLIP1-219ENST00000620786 NUDT16Q96DE0 195 aaKnown RBP13.65□□□□□ -0.22
CLIP1-219ENST00000620786 C22orf23Q9BZE7 217 aa13.65□□□□□ -0.22
CLIP1-219ENST00000620786 SRCIN1Q9C0H9 1055 aa13.65□□□□□ -0.22
CLIP1-219ENST00000620786 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.65□□□□□ -0.22
CLIP1-219ENST00000620786 TOP2BQ02880 1626 aa13.65□□□□□ -0.22
CLIP1-219ENST00000620786 OLFM4Q6UX06 510 aa13.65□□□□□ -0.22
CLIP1-219ENST00000620786 NACAP1Q9BZK3 213 aa13.65□□□□□ -0.23
CLIP1-219ENST00000620786 ZSCAN29Q8IWY8 852 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-219ENST00000620786 ATP2B1P20020 1258 aa13.64□□□□□ -0.23
CLIP1-219ENST00000620786 ANKRD30BQ9BXX2 1392 aa13.64□□□□□ -0.23
CLIP1-219ENST00000620786 NUCB2P80303 420 aa13.64□□□□□ -0.23
CLIP1-219ENST00000620786 CDK13Q14004 1512 aaKnown RBP13.64□□□□□ -0.23
CLIP1-219ENST00000620786 STARD3NLO95772 234 aa13.63□□□□□ -0.23
CLIP1-219ENST00000620786 CHMP5Q9NZZ3 219 aa13.63□□□□□ -0.23
CLIP1-219ENST00000620786 KRT18P05783 430 aaKnown RBP13.63□□□□□ -0.23
CLIP1-219ENST00000620786 TMOD3Q9NYL9 352 aa13.63□□□□□ -0.23
CLIP1-219ENST00000620786 ZFYVE27Q5T4F4 411 aa13.62□□□□□ -0.23
CLIP1-219ENST00000620786 ZSCAN25Q6NSZ9 544 aa13.62□□□□□ -0.23
CLIP1-219ENST00000620786 ARHGEF11O15085 1522 aa13.62□□□□□ -0.23
CLIP1-219ENST00000620786 IGHMBP2P38935 993 aaKnown RBP13.62□□□□□ -0.23
CLIP1-219ENST00000620786 HOMER1Q86YM7 354 aa13.62□□□□□ -0.23
CLIP1-219ENST00000620786 KIAA0586Q9BVV6 1533 aa13.62□□□□□ -0.23
CLIP1-219ENST00000620786 ZPR1O75312 459 aa13.62□□□□□ -0.23
CLIP1-219ENST00000620786 MAP4K4O95819 1239 aaPredicted RBP13.61□□□□□ -0.23
CLIP1-219ENST00000620786 SPINK5Q9NQ38 1064 aaPredicted RBP13.61□□□□□ -0.23
CLIP1-219ENST00000620786 FKBP4Q02790 459 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLIP1-219ENST00000620786 CCDC69A6NI79 296 aa13.61□□□□□ -0.23
CLIP1-219ENST00000620786 GNAT3A8MTJ3 354 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms