RNA–Protein interactions for RNA: ENST00000620709.4

CD40-207, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,522 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-207ENST00000620709 ALS2Q96Q42 1657 aa23.06■■□□□ 1.28
CD40-207ENST00000620709 L3MBTL2Q969R5 705 aa23.06■■□□□ 1.28
CD40-207ENST00000620709 VPS72Q15906 364 aa23.05■■□□□ 1.28
CD40-207ENST00000620709 EP400Q96L91 3159 aa23.04■■□□□ 1.28
CD40-207ENST00000620709 A0A0G2JS52 829 aa23.04■■□□□ 1.28
CD40-207ENST00000620709 MYT1Q01538 1121 aa23.04■■□□□ 1.28
CD40-207ENST00000620709 NWD2Q9ULI1 1742 aa23.04■■□□□ 1.28
CD40-207ENST00000620709 SRPK2P78362 688 aaKnown RBP23.03■■□□□ 1.28
CD40-207ENST00000620709 NUTM2GQ5VZR2 741 aa23.03■■□□□ 1.28
CD40-207ENST00000620709 BTG4Q9NY30 223 aa23.03■■□□□ 1.28
CD40-207ENST00000620709 CENPJQ9HC77 1338 aaPredicted RBP23.03■■□□□ 1.28
CD40-207ENST00000620709 ACEP12821 1306 aa23.02■■□□□ 1.28
CD40-207ENST00000620709 SEPT12Q8IYM1 358 aa23.02■■□□□ 1.28
CD40-207ENST00000620709 CCDC61Q9Y6R9 512 aa23.02■■□□□ 1.28
CD40-207ENST00000620709 NBPF8Q3BBV2 869 aa22.99■■□□□ 1.27
CD40-207ENST00000620709 CABP2Q9NPB3 220 aa22.99■■□□□ 1.27
CD40-207ENST00000620709 PRDM11Q9NQV5 511 aa22.99■■□□□ 1.27
CD40-207ENST00000620709 BRWD3Q6RI45 1802 aa22.99■■□□□ 1.27
CD40-207ENST00000620709 COL14A1Q05707 1796 aaKnown RBP22.98■■□□□ 1.27
CD40-207ENST00000620709 TOPAZ1Q8N9V7 1692 aa22.97■■□□□ 1.27
CD40-207ENST00000620709 QRICH2Q9H0J4 1663 aa22.97■■□□□ 1.27
CD40-207ENST00000620709 FAM98CQ17RN3 349 aaKnown RBP22.97■■□□□ 1.27
CD40-207ENST00000620709 NRAPQ86VF7 1730 aa22.95■■□□□ 1.26
CD40-207ENST00000620709 CRYBG1Q9Y4K1 1723 aa22.95■■□□□ 1.26
CD40-207ENST00000620709 PPIP5K1Q6PFW1 1433 aa22.95■■□□□ 1.26
CD40-207ENST00000620709 PLEKHG3A1L390 1219 aa22.95■■□□□ 1.26
CD40-207ENST00000620709 ZC3H6P61129 1189 aaKnown RBP22.95■■□□□ 1.26
CD40-207ENST00000620709 CHRNA2Q15822 529 aa22.95■■□□□ 1.26
CD40-207ENST00000620709 CCDC125Q86Z20 511 aa22.95■■□□□ 1.26
CD40-207ENST00000620709 POLR3AO14802 1390 aaPredicted RBP22.95■■□□□ 1.26
CD40-207ENST00000620709 ABTB2Q8N961 1025 aa22.94■■□□□ 1.26
CD40-207ENST00000620709 KRT27Q7Z3Y8 459 aa22.93■■□□□ 1.26
CD40-207ENST00000620709 KIAA0232Q92628 1395 aa22.93■■□□□ 1.26
CD40-207ENST00000620709 ROCK2O75116 1388 aaKnown RBP22.92■■□□□ 1.26
CD40-207ENST00000620709 STRN4Q9NRL3 753 aa22.92■■□□□ 1.26
CD40-207ENST00000620709 TRPM1Q7Z4N2 1603 aa22.91■■□□□ 1.26
CD40-207ENST00000620709 PHRF1Q9P1Y6 1649 aaKnown RBP22.91■■□□□ 1.26
CD40-207ENST00000620709 ONECUT3O60422 494 aaPredicted RBP22.91■■□□□ 1.26
CD40-207ENST00000620709 SF3B2Q13435 895 aaKnown RBP22.91■■□□□ 1.26
CD40-207ENST00000620709 CABP1Q9NZU7 370 aa22.89■■□□□ 1.26
CD40-207ENST00000620709 BLMP54132 1417 aaPredicted RBP22.88■■□□□ 1.25
CD40-207ENST00000620709 ZRANB1Q9UGI0 708 aa22.88■■□□□ 1.25
CD40-207ENST00000620709 SPATA31A5Q5VU36 1347 aa22.88■■□□□ 1.25
CD40-207ENST00000620709 EVC2Q86UK5 1308 aa22.88■■□□□ 1.25
CD40-207ENST00000620709 SPATA31A7Q8IWB4 1347 aa22.88■■□□□ 1.25
CD40-207ENST00000620709 ZBTB7CA1YPR0 619 aa22.87■■□□□ 1.25
CD40-207ENST00000620709 EVA1CP58658 441 aa22.87■■□□□ 1.25
CD40-207ENST00000620709 DEFB132Q7Z7B7 95 aa22.86■■□□□ 1.25
CD40-207ENST00000620709 NLRP13Q86W25 1043 aa22.85■■□□□ 1.25
CD40-207ENST00000620709 FAM182BQ5T319 152 aa22.84■■□□□ 1.25
CD40-207ENST00000620709 USP35Q9P2H5 1018 aa22.84■■□□□ 1.25
CD40-207ENST00000620709 NRKQ7Z2Y5 1582 aa22.82■■□□□ 1.24
CD40-207ENST00000620709 SPATA31A1Q5TZJ5 1347 aa22.82■■□□□ 1.24
CD40-207ENST00000620709 NLRP6P59044 892 aa22.81■■□□□ 1.24
CD40-207ENST00000620709 TONSLQ96HA7 1378 aa22.8■■□□□ 1.24
CD40-207ENST00000620709 USP19O94966 1318 aa22.8■■□□□ 1.24
CD40-207ENST00000620709 GCP02774 474 aa22.8■■□□□ 1.24
CD40-207ENST00000620709 USP6P35125 1406 aa22.79■■□□□ 1.24
CD40-207ENST00000620709 CARD11Q9BXL7 1154 aa22.79■■□□□ 1.24
CD40-207ENST00000620709 SRCAPQ6ZRS2 3230 aa22.77■■□□□ 1.24
CD40-207ENST00000620709 BRD4O60885 1362 aaPredicted RBP22.77■■□□□ 1.24
CD40-207ENST00000620709 LARP1Q6PKG0 1096 aaKnown RBP22.77■■□□□ 1.24
CD40-207ENST00000620709 SSH2Q76I76 1423 aa22.76■■□□□ 1.23
CD40-207ENST00000620709 THSD7AQ9UPZ6 1657 aa22.76■■□□□ 1.23
CD40-207ENST00000620709 CAMTA1Q9Y6Y1 1673 aa22.76■■□□□ 1.23
CD40-207ENST00000620709 BAG6P46379 1132 aa22.76■■□□□ 1.23
CD40-207ENST00000620709 CPDO75976 1380 aa22.75■■□□□ 1.23
CD40-207ENST00000620709 SOX12O15370 315 aa22.74■■□□□ 1.23
CD40-207ENST00000620709 ZNF692Q9BU19 519 aaPredicted RBP22.72■■□□□ 1.23
CD40-207ENST00000620709 PDE3BQ13370 1112 aa22.72■■□□□ 1.23
CD40-207ENST00000620709 LMO7Q8WWI1 1683 aa22.71■■□□□ 1.23
CD40-207ENST00000620709 TTC21BQ7Z4L5 1316 aa22.71■■□□□ 1.23
CD40-207ENST00000620709 EN1Q05925 392 aaPredicted RBP22.71■■□□□ 1.23
CD40-207ENST00000620709 TCP11L2Q8N4U5 519 aa22.71■■□□□ 1.23
CD40-207ENST00000620709 PIK3C2AO00443 1686 aa22.71■■□□□ 1.23
CD40-207ENST00000620709 TMC1Q8TDI8 760 aa22.7■■□□□ 1.22
CD40-207ENST00000620709 TIMELESSQ9UNS1 1208 aa22.7■■□□□ 1.22
CD40-207ENST00000620709 KTN1Q86UP2 1357 aaKnown RBP22.69■■□□□ 1.22
CD40-207ENST00000620709 RGPD1P0DJD0 1748 aa22.69■■□□□ 1.22
CD40-207ENST00000620709 BARGINQ6ZT62 677 aa22.69■■□□□ 1.22
CD40-207ENST00000620709 AKAP12Q02952 1782 aa22.69■■□□□ 1.22
CD40-207ENST00000620709 TRIM37O94972 964 aa22.68■■□□□ 1.22
CD40-207ENST00000620709 COL5A2P05997 1499 aaPredicted RBP22.68■■□□□ 1.22
CD40-207ENST00000620709 SLIT3O75094 1523 aa22.68■■□□□ 1.22
CD40-207ENST00000620709 FAM196AQ6ZSG2 479 aa22.67■■□□□ 1.22
CD40-207ENST00000620709 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.67■■□□□ 1.22
CD40-207ENST00000620709 TTC21AQ8NDW8 1320 aa22.66■■□□□ 1.22
CD40-207ENST00000620709 AATKQ6ZMQ8 1374 aa22.65■■□□□ 1.22
CD40-207ENST00000620709 PSDA5PKW4 1024 aaPredicted RBP22.65■■□□□ 1.22
CD40-207ENST00000620709 TOM1L2Q6ZVM7 507 aa22.65■■□□□ 1.22
CD40-207ENST00000620709 THRAP3Q9Y2W1 955 aaKnown RBP22.65■■□□□ 1.22
CD40-207ENST00000620709 KCNH5Q8NCM2 988 aa22.64■■□□□ 1.21
CD40-207ENST00000620709 CRB1P82279 1406 aa22.64■■□□□ 1.21
CD40-207ENST00000620709 SBNO2Q9Y2G9 1366 aa22.63■■□□□ 1.21
CD40-207ENST00000620709 CPSF1Q10570 1443 aaKnown RBP22.63■■□□□ 1.21
CD40-207ENST00000620709 APBA3O96018 575 aa22.62■■□□□ 1.21
CD40-207ENST00000620709 CSB-PGBD3P0DP91 1061 aa22.62■■□□□ 1.21
CD40-207ENST00000620709 HDGFL2Q7Z4V5 671 aaPredicted RBP22.62■■□□□ 1.21
CD40-207ENST00000620709 AXIN2Q9Y2T1 843 aa22.62■■□□□ 1.21
CD40-207ENST00000620709 TNS1Q9HBL0 1735 aaKnown RBP22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms