RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 VGFO15240 615 aaPredicted RBP13.69□□□□□ -0.22
UPF3A-212ENST00000619079 KNSTRNQ9Y448 316 aa13.68□□□□□ -0.22
UPF3A-212ENST00000619079 SCAF11Q99590 1463 aaKnown RBP13.68□□□□□ -0.22
UPF3A-212ENST00000619079 SLIT1O75093 1534 aa13.68□□□□□ -0.22
UPF3A-212ENST00000619079 PTMSP20962 102 aa13.68□□□□□ -0.22
UPF3A-212ENST00000619079 ARHGAP23Q9P227 1491 aa13.67□□□□□ -0.22
UPF3A-212ENST00000619079 ZFYVE9O95405 1425 aa13.66□□□□□ -0.22
UPF3A-212ENST00000619079 BCAR3O75815 825 aa13.66□□□□□ -0.22
UPF3A-212ENST00000619079 CANXP27824 592 aaKnown RBP13.66□□□□□ -0.22
UPF3A-212ENST00000619079 CALD1Q05682 793 aaKnown RBP13.66□□□□□ -0.22
UPF3A-212ENST00000619079 NEXMIFQ5QGS0 1516 aa13.64□□□□□ -0.23
UPF3A-212ENST00000619079 TERF1P54274 439 aa13.64□□□□□ -0.23
UPF3A-212ENST00000619079 NBPF1Q3BBV0 1214 aa13.64□□□□□ -0.23
UPF3A-212ENST00000619079 DMRT2Q9Y5R5 561 aa13.64□□□□□ -0.23
UPF3A-212ENST00000619079 NPC1L1Q9UHC9 1359 aa13.64□□□□□ -0.23
UPF3A-212ENST00000619079 ADGRF5Q8IZF2 1346 aa13.64□□□□□ -0.23
UPF3A-212ENST00000619079 SKOR2Q2VWA4 1001 aaPredicted RBP13.64□□□□□ -0.23
UPF3A-212ENST00000619079 SLC26A8Q96RN1 970 aa13.64□□□□□ -0.23
UPF3A-212ENST00000619079 MAP7D2Q96T17 732 aa13.64□□□□□ -0.23
UPF3A-212ENST00000619079 NPHP4O75161 1426 aaPredicted RBP13.64□□□□□ -0.23
UPF3A-212ENST00000619079 ERBB4Q15303 1308 aa13.63□□□□□ -0.23
UPF3A-212ENST00000619079 NEURL4Q96JN8 1562 aa13.63□□□□□ -0.23
UPF3A-212ENST00000619079 CDCA8Q53HL2 280 aa13.63□□□□□ -0.23
UPF3A-212ENST00000619079 PLEKHG1Q9ULL1 1385 aa13.62□□□□□ -0.23
UPF3A-212ENST00000619079 ASXL1Q8IXJ9 1541 aa13.62□□□□□ -0.23
UPF3A-212ENST00000619079 AMER1Q5JTC6 1135 aaPredicted RBP13.62□□□□□ -0.23
UPF3A-212ENST00000619079 HSCBQ8IWL3 235 aa13.62□□□□□ -0.23
UPF3A-212ENST00000619079 C22orf23Q9BZE7 217 aa13.61□□□□□ -0.23
UPF3A-212ENST00000619079 RWDD1Q9H446 243 aaPredicted RBP13.61□□□□□ -0.23
UPF3A-212ENST00000619079 COG6Q9Y2V7 657 aa13.61□□□□□ -0.23
UPF3A-212ENST00000619079 CCDC173Q0VFZ6 552 aa13.61□□□□□ -0.23
UPF3A-212ENST00000619079 STAC3Q96MF2 364 aa13.61□□□□□ -0.23
UPF3A-212ENST00000619079 GBP4Q96PP9 640 aa13.61□□□□□ -0.23
UPF3A-212ENST00000619079 CIZ1Q9ULV3 898 aaPredicted RBP13.61□□□□□ -0.23
UPF3A-212ENST00000619079 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-212ENST00000619079 KIAA1211Q6ZU35 1233 aa13.6□□□□□ -0.23
UPF3A-212ENST00000619079 ANP32BQ92688 251 aaKnown RBP13.6□□□□□ -0.23
UPF3A-212ENST00000619079 APAF1O14727 1248 aa13.6□□□□□ -0.23
UPF3A-212ENST00000619079 SPINK5Q9NQ38 1064 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-212ENST00000619079 PDZRN3Q9UPQ7 1066 aa13.6□□□□□ -0.23
UPF3A-212ENST00000619079 NCOA3Q9Y6Q9 1424 aa13.6□□□□□ -0.23
UPF3A-212ENST00000619079 PPLO60437 1756 aa13.59□□□□□ -0.23
UPF3A-212ENST00000619079 STRCQ7RTU9 1775 aa13.59□□□□□ -0.23
UPF3A-212ENST00000619079 PANK1Q8TE04 598 aa13.59□□□□□ -0.23
UPF3A-212ENST00000619079 PODXL2Q9NZ53 605 aa13.59□□□□□ -0.23
UPF3A-212ENST00000619079 MED14O60244 1454 aa13.59□□□□□ -0.23
UPF3A-212ENST00000619079 ZSCAN30Q86W11 494 aa13.59□□□□□ -0.23
UPF3A-212ENST00000619079 MYOM2P54296 1465 aa13.58□□□□□ -0.23
UPF3A-212ENST00000619079 OFD1O75665 1012 aa13.58□□□□□ -0.24
UPF3A-212ENST00000619079 SPRYD3Q8NCJ5 442 aa13.58□□□□□ -0.24
UPF3A-212ENST00000619079 IQGAP1P46940 1657 aa13.58□□□□□ -0.24
UPF3A-212ENST00000619079 CFAP70Q5T0N1 1121 aa13.57□□□□□ -0.24
UPF3A-212ENST00000619079 CCDC146Q8IYE0 955 aa13.57□□□□□ -0.24
UPF3A-212ENST00000619079 PPP1R9BQ96SB3 815 aa13.57□□□□□ -0.24
UPF3A-212ENST00000619079 ZNF692Q9BU19 519 aaPredicted RBP13.56□□□□□ -0.24
UPF3A-212ENST00000619079 DDIT3P35638 169 aa13.56□□□□□ -0.24
UPF3A-212ENST00000619079 MTERF4Q7Z6M4 381 aaKnown RBP13.56□□□□□ -0.24
UPF3A-212ENST00000619079 IFT172Q9UG01 1749 aa13.56□□□□□ -0.24
UPF3A-212ENST00000619079 MSNP26038 577 aaKnown RBP13.55□□□□□ -0.24
UPF3A-212ENST00000619079 TBX22Q9Y458 520 aa13.55□□□□□ -0.24
UPF3A-212ENST00000619079 SNX21Q969T3 373 aa13.55□□□□□ -0.24
UPF3A-212ENST00000619079 IBTKQ9P2D0 1353 aaPredicted RBP13.55□□□□□ -0.24
UPF3A-212ENST00000619079 ADAMTS13Q76LX8 1427 aa13.55□□□□□ -0.24
UPF3A-212ENST00000619079 TMEM132EQ6IEE7 984 aa13.54□□□□□ -0.24
UPF3A-212ENST00000619079 PCDHB15Q9Y5E8 787 aa13.54□□□□□ -0.24
UPF3A-212ENST00000619079 SETBP1Q9Y6X0 1596 aa13.54□□□□□ -0.24
UPF3A-212ENST00000619079 HS1BP3Q53T59 392 aa13.54□□□□□ -0.24
UPF3A-212ENST00000619079 SMC5Q8IY18 1101 aa13.54□□□□□ -0.24
UPF3A-212ENST00000619079 ZNF335Q9H4Z2 1342 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-212ENST00000619079 MFAP1P55081 439 aaKnown RBP13.53□□□□□ -0.24
UPF3A-212ENST00000619079 C14orf93Q9H972 538 aaKnown RBP13.53□□□□□ -0.24
UPF3A-212ENST00000619079 STK26Q9P289 416 aa13.53□□□□□ -0.24
UPF3A-212ENST00000619079 NRXN1Q9ULB1 1477 aa13.53□□□□□ -0.24
UPF3A-212ENST00000619079 METP08581 1390 aa13.52□□□□□ -0.24
UPF3A-212ENST00000619079 NASPP49321 788 aaPredicted RBP13.52□□□□□ -0.24
UPF3A-212ENST00000619079 RARSP54136 660 aaKnown RBP13.52□□□□□ -0.24
UPF3A-212ENST00000619079 GAS2L3Q86XJ1 694 aa13.52□□□□□ -0.24
UPF3A-212ENST00000619079 WWC1Q8IX03 1113 aa13.52□□□□□ -0.24
UPF3A-212ENST00000619079 TNPO1Q92973 898 aaKnown RBP13.52□□□□□ -0.24
UPF3A-212ENST00000619079 ALKQ9UM73 1620 aa13.52□□□□□ -0.24
UPF3A-212ENST00000619079 GOLGA6L22H0YM25 854 aa13.52□□□□□ -0.25
UPF3A-212ENST00000619079 RAB3GAP1Q15042 981 aa13.52□□□□□ -0.25
UPF3A-212ENST00000619079 PRDM4Q9UKN5 801 aa13.51□□□□□ -0.25
UPF3A-212ENST00000619079 NRXN3Q9Y4C0 1643 aa13.51□□□□□ -0.25
UPF3A-212ENST00000619079 DIP2AQ14689 1571 aa13.51□□□□□ -0.25
UPF3A-212ENST00000619079 RBM25P49756 843 aaKnown RBP13.51□□□□□ -0.25
UPF3A-212ENST00000619079 AMOTL2Q9Y2J4 779 aa13.51□□□□□ -0.25
UPF3A-212ENST00000619079 SLC24A1O60721 1099 aa13.5□□□□□ -0.25
UPF3A-212ENST00000619079 HSP90AB1P08238 724 aaKnown RBP13.49□□□□□ -0.25
UPF3A-212ENST00000619079 KCNA6P17658 529 aa13.49□□□□□ -0.25
UPF3A-212ENST00000619079 SMAP1Q8IYB5 467 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-212ENST00000619079 TRAK1Q9UPV9 953 aa13.49□□□□□ -0.25
UPF3A-212ENST00000619079 PIK3R4Q99570 1358 aa13.49□□□□□ -0.25
UPF3A-212ENST00000619079 RIPK4P57078 832 aa13.48□□□□□ -0.25
UPF3A-212ENST00000619079 MVPQ14764 893 aaKnown RBP13.48□□□□□ -0.25
UPF3A-212ENST00000619079 POLR3AO14802 1390 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-212ENST00000619079 MYOM1P52179 1685 aa13.47□□□□□ -0.25
UPF3A-212ENST00000619079 RLBP1P12271 317 aa13.47□□□□□ -0.25
UPF3A-212ENST00000619079 HDAC1Q13547 482 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-212ENST00000619079 CSPP1Q1MSJ5 1256 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms