RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 SPATA31A7Q8IWB4 1347 aa7.09□□□□□ -1.28
SNCA-213ENST00000618500 ACIN1Q9UKV3 1341 aaKnown RBP7.09□□□□□ -1.28
SNCA-213ENST00000618500 KIAA1210Q9ULL0 1709 aa7.08□□□□□ -1.28
SNCA-213ENST00000618500 DCAF8L1A6NGE4 600 aa7.08□□□□□ -1.28
SNCA-213ENST00000618500 USP54Q70EL1 1684 aa7.08□□□□□ -1.28
SNCA-213ENST00000618500 CAMTA1Q9Y6Y1 1673 aa7.08□□□□□ -1.28
SNCA-213ENST00000618500 ARHGEF28Q8N1W1 1705 aaKnown RBP7.08□□□□□ -1.28
SNCA-213ENST00000618500 MAP3K5Q99683 1374 aa7.07□□□□□ -1.28
SNCA-213ENST00000618500 DEFB132Q7Z7B7 95 aa7.07□□□□□ -1.28
SNCA-213ENST00000618500 CAMKK2Q96RR4 588 aa7.07□□□□□ -1.28
SNCA-213ENST00000618500 ZNF326Q5BKZ1 582 aaKnown RBP7.07□□□□□ -1.28
SNCA-213ENST00000618500 AATKQ6ZMQ8 1374 aa7.07□□□□□ -1.28
SNCA-213ENST00000618500 NHSQ6T4R5 1651 aa7.06□□□□□ -1.28
SNCA-213ENST00000618500 ESCO1Q5FWF5 840 aa7.06□□□□□ -1.28
SNCA-213ENST00000618500 DHX57Q6P158 1386 aaKnown RBP7.06□□□□□ -1.28
SNCA-213ENST00000618500 BRD4O60885 1362 aaPredicted RBP7.05□□□□□ -1.28
SNCA-213ENST00000618500 QRICH2Q9H0J4 1663 aa7.05□□□□□ -1.28
SNCA-213ENST00000618500 BARGINQ6ZT62 677 aa7.05□□□□□ -1.28
SNCA-213ENST00000618500 KRT28Q7Z3Y7 464 aa7.05□□□□□ -1.28
SNCA-213ENST00000618500 COL18A1P39060 1754 aa7.05□□□□□ -1.28
SNCA-213ENST00000618500 CPDO75976 1380 aa7.04□□□□□ -1.28
SNCA-213ENST00000618500 SLIT3O75094 1523 aa7.04□□□□□ -1.28
SNCA-213ENST00000618500 YY1P25490 414 aa7.04□□□□□ -1.28
SNCA-213ENST00000618500 FAM196AQ6ZSG2 479 aa7.04□□□□□ -1.28
SNCA-213ENST00000618500 FAM50AQ14320 339 aaKnown RBP7.03□□□□□ -1.28
SNCA-213ENST00000618500 SPATA31A1Q5TZJ5 1347 aa7.03□□□□□ -1.28
SNCA-213ENST00000618500 EP400Q96L91 3159 aa7.03□□□□□ -1.28
SNCA-213ENST00000618500 PLEKHH1Q9ULM0 1364 aa7.03□□□□□ -1.28
SNCA-213ENST00000618500 PHF8Q9UPP1 1060 aa7.03□□□□□ -1.28
SNCA-213ENST00000618500 IFFO2Q5TF58 517 aa7.03□□□□□ -1.28
SNCA-213ENST00000618500 THRAP3Q9Y2W1 955 aaKnown RBP7.03□□□□□ -1.28
SNCA-213ENST00000618500 SHANK3Q9BYB0 1731 aa7.03□□□□□ -1.28
SNCA-213ENST00000618500 FAM83GA6ND36 823 aa7.02□□□□□ -1.29
SNCA-213ENST00000618500 FOXO3O43524 673 aa7.02□□□□□ -1.29
SNCA-213ENST00000618500 SSH2Q76I76 1423 aa7.02□□□□□ -1.29
SNCA-213ENST00000618500 POLR3AO14802 1390 aaPredicted RBP7.01□□□□□ -1.29
SNCA-213ENST00000618500 PSDA5PKW4 1024 aaPredicted RBP7.01□□□□□ -1.29
SNCA-213ENST00000618500 KCNQ2O43526 872 aa7.01□□□□□ -1.29
SNCA-213ENST00000618500 R3HDM1Q15032 1099 aaKnown RBP7.01□□□□□ -1.29
SNCA-213ENST00000618500 NBPF8Q3BBV2 869 aa7.01□□□□□ -1.29
SNCA-213ENST00000618500 NBPF14Q5TI25 921 aa7.01□□□□□ -1.29
SNCA-213ENST00000618500 C14orf93Q9H972 538 aaKnown RBP7.01□□□□□ -1.29
SNCA-213ENST00000618500 HOXD11P31277 338 aaPredicted RBP7□□□□□ -1.29
SNCA-213ENST00000618500 EN1Q05925 392 aaPredicted RBP7□□□□□ -1.29
SNCA-213ENST00000618500 GPRASP1Q5JY77 1395 aa7□□□□□ -1.29
SNCA-213ENST00000618500 OVOS2A0A0G2JMS6 1433 aa7□□□□□ -1.29
SNCA-213ENST00000618500 OVOS2A0A0J9YW53 1432 aa7□□□□□ -1.29
SNCA-213ENST00000618500 OVOS2Q6IE36 1432 aa7□□□□□ -1.29
SNCA-213ENST00000618500 FAM208AQ9UK61 1670 aaKnown RBP7□□□□□ -1.29
SNCA-213ENST00000618500 SPON1Q9HCB6 807 aa7□□□□□ -1.29
SNCA-213ENST00000618500 USP19O94966 1318 aa7□□□□□ -1.29
SNCA-213ENST00000618500 ADGRF5Q8IZF2 1346 aa7□□□□□ -1.29
SNCA-213ENST00000618500 EZH2Q15910 746 aaKnown RBP6.99□□□□□ -1.29
SNCA-213ENST00000618500 COL5A2P05997 1499 aaPredicted RBP6.98□□□□□ -1.29
SNCA-213ENST00000618500 PLSCR1O15162 318 aa6.98□□□□□ -1.29
SNCA-213ENST00000618500 STAC3Q96MF2 364 aa6.98□□□□□ -1.29
SNCA-213ENST00000618500 PIK3C2AO00443 1686 aa6.98□□□□□ -1.29
SNCA-213ENST00000618500 FAM98CQ17RN3 349 aaKnown RBP6.98□□□□□ -1.29
SNCA-213ENST00000618500 PPP4R3CPQ6ZMV5 832 aa6.98□□□□□ -1.29
SNCA-213ENST00000618500 TUBGCP6Q96RT7 1819 aa6.98□□□□□ -1.29
SNCA-213ENST00000618500 BTG4Q9NY30 223 aa6.98□□□□□ -1.29
SNCA-213ENST00000618500 CICQ96RK0 1608 aaPredicted RBP6.97□□□□□ -1.29
SNCA-213ENST00000618500 LY75O60449 1722 aa6.97□□□□□ -1.29
SNCA-213ENST00000618500 CRB1P82279 1406 aa6.97□□□□□ -1.29
SNCA-213ENST00000618500 WAPLQ7Z5K2 1190 aa6.96□□□□□ -1.29
SNCA-213ENST00000618500 XPCQ01831 940 aaPredicted RBP6.96□□□□□ -1.3
SNCA-213ENST00000618500 HAP1P54257 671 aaPredicted RBP6.95□□□□□ -1.3
SNCA-213ENST00000618500 BTAF1O14981 1849 aa6.95□□□□□ -1.3
SNCA-213ENST00000618500 KIAA0232Q92628 1395 aa6.95□□□□□ -1.3
SNCA-213ENST00000618500 APBA3O96018 575 aa6.94□□□□□ -1.3
SNCA-213ENST00000618500 C1QTNF8P60827 252 aa6.94□□□□□ -1.3
SNCA-213ENST00000618500 ZNF784Q8NCA9 323 aaPredicted RBP6.94□□□□□ -1.3
SNCA-213ENST00000618500 CCDC9Q9Y3X0 531 aaKnown RBP6.94□□□□□ -1.3
SNCA-213ENST00000618500 MON2Q7Z3U7 1717 aa6.94□□□□□ -1.3
SNCA-213ENST00000618500 PTGER2P43116 358 aa6.94□□□□□ -1.3
SNCA-213ENST00000618500 SGIP1Q9BQI5 828 aa6.94□□□□□ -1.3
SNCA-213ENST00000618500 CDCA7Q9BWT1 371 aaPredicted RBP6.94□□□□□ -1.3
SNCA-213ENST00000618500 PRR36Q9H6K5 1346 aa6.94□□□□□ -1.3
SNCA-213ENST00000618500 TCP11L2Q8N4U5 519 aa6.93□□□□□ -1.3
SNCA-213ENST00000618500 TNS2Q63HR2 1409 aa6.93□□□□□ -1.3
SNCA-213ENST00000618500 TRIM37O94972 964 aa6.93□□□□□ -1.3
SNCA-213ENST00000618500 CABLES1Q8TDN4 633 aa6.93□□□□□ -1.3
SNCA-213ENST00000618500 BCL11BQ9C0K0 894 aaPredicted RBP6.93□□□□□ -1.3
SNCA-213ENST00000618500 NFAT5O94916 1531 aa6.92□□□□□ -1.3
SNCA-213ENST00000618500 RGPD5Q99666 1765 aa6.92□□□□□ -1.3
SNCA-213ENST00000618500 WASLO00401 505 aaPredicted RBP6.92□□□□□ -1.3
SNCA-213ENST00000618500 PPP1R1BQ9UD71 204 aaPredicted RBP6.92□□□□□ -1.3
SNCA-213ENST00000618500 PLEKHG3A1L390 1219 aa6.91□□□□□ -1.3
SNCA-213ENST00000618500 LOC105371045A0A1W2PR82 267 aa6.91□□□□□ -1.3
SNCA-213ENST00000618500 PRAM1Q96QH2 718 aa6.91□□□□□ -1.3
SNCA-213ENST00000618500 SLC4A1APQ9BWU0 796 aaKnown RBP6.91□□□□□ -1.3
SNCA-213ENST00000618500 PRDM11Q9NQV5 511 aa6.91□□□□□ -1.3
SNCA-213ENST00000618500 MTFR1LQ9H019 292 aa6.9□□□□□ -1.3
SNCA-213ENST00000618500 ADCY9O60503 1353 aa6.9□□□□□ -1.3
SNCA-213ENST00000618500 KIF13BQ9NQT8 1826 aa6.9□□□□□ -1.31
SNCA-213ENST00000618500 PDE3BQ13370 1112 aa6.9□□□□□ -1.31
SNCA-213ENST00000618500 CPSF1Q10570 1443 aaKnown RBP6.89□□□□□ -1.31
SNCA-213ENST00000618500 STK26Q9P289 416 aa6.89□□□□□ -1.31
SNCA-213ENST00000618500 CCDC7Q96M83 1385 aa6.89□□□□□ -1.31
SNCA-213ENST00000618500 LTN1O94822 1766 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms