RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 RIMS2Q9UQ26 1411 aa18.44■□□□□ 0.54
SHROOM1-208ENST00000617339 POLR3AO14802 1390 aaPredicted RBP18.43■□□□□ 0.54
SHROOM1-208ENST00000617339 NKTRP30414 1462 aaKnown RBP18.42■□□□□ 0.54
SHROOM1-208ENST00000617339 CENPQQ7L2Z9 268 aaPredicted RBP18.42■□□□□ 0.54
SHROOM1-208ENST00000617339 SIGLEC1Q9BZZ2 1709 aa18.41■□□□□ 0.54
SHROOM1-208ENST00000617339 A0A0G2JS52 829 aa18.41■□□□□ 0.54
SHROOM1-208ENST00000617339 SSH1Q8WYL5 1049 aa18.41■□□□□ 0.54
SHROOM1-208ENST00000617339 RSPH6AQ9H0K4 717 aa18.41■□□□□ 0.54
SHROOM1-208ENST00000617339 MIS18AQ9NYP9 233 aa18.41■□□□□ 0.54
SHROOM1-208ENST00000617339 PCDHB15Q9Y5E8 787 aa18.41■□□□□ 0.54
SHROOM1-208ENST00000617339 LAMC1P11047 1609 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 AEBP1Q8IUX7 1158 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 C1orf115Q9H7X2 142 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 NPC1L1Q9UHC9 1359 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 RIMBP3CA6NJZ7 1639 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 RIMBP3BA6NNM3 1639 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 RIMBP3Q9UFD9 1639 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 NOB1Q9ULX3 412 aaKnown RBP18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 CCDC61Q9Y6R9 512 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 SPRYD3Q8NCJ5 442 aa18.4■□□□□ 0.54
SHROOM1-208ENST00000617339 ADGRB1O14514 1584 aa18.39■□□□□ 0.53
SHROOM1-208ENST00000617339 TRMT2AQ8IZ69 625 aaKnown RBP18.39■□□□□ 0.53
SHROOM1-208ENST00000617339 SLKQ9H2G2 1235 aaPredicted RBP18.39■□□□□ 0.53
SHROOM1-208ENST00000617339 ATAD2Q6PL18 1390 aa18.38■□□□□ 0.53
SHROOM1-208ENST00000617339 TRIM35Q9UPQ4 493 aa18.38■□□□□ 0.53
SHROOM1-208ENST00000617339 SBNO2Q9Y2G9 1366 aa18.38■□□□□ 0.53
SHROOM1-208ENST00000617339 APBB1O00213 710 aa18.38■□□□□ 0.53
SHROOM1-208ENST00000617339 CAMSAP1Q5T5Y3 1602 aa18.38■□□□□ 0.53
SHROOM1-208ENST00000617339 LMTK2Q8IWU2 1503 aa18.38■□□□□ 0.53
SHROOM1-208ENST00000617339 GLI2P10070 1586 aa18.38■□□□□ 0.53
SHROOM1-208ENST00000617339 TULP4Q9NRJ4 1543 aa18.38■□□□□ 0.53
SHROOM1-208ENST00000617339 SULT6B1Q6IMI4 303 aa18.37■□□□□ 0.53
SHROOM1-208ENST00000617339 NECTIN2Q92692 538 aa18.37■□□□□ 0.53
SHROOM1-208ENST00000617339 FAM43AQ8N2R8 423 aa18.37■□□□□ 0.53
SHROOM1-208ENST00000617339 KRT24Q2M2I5 525 aa18.36■□□□□ 0.53
SHROOM1-208ENST00000617339 AMOTL2Q9Y2J4 779 aa18.36■□□□□ 0.53
SHROOM1-208ENST00000617339 XPCQ01831 940 aaPredicted RBP18.36■□□□□ 0.53
SHROOM1-208ENST00000617339 HSP90AB2PQ58FF8 381 aa18.36■□□□□ 0.53
SHROOM1-208ENST00000617339 NEXMIFQ5QGS0 1516 aa18.36■□□□□ 0.53
SHROOM1-208ENST00000617339 FAM161AQ3B820 660 aa18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 ZKSCAN2Q63HK3 967 aa18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 DZIP1LQ8IYY4 767 aaKnown RBP18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 TSPYL6Q8N831 410 aa18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 NRXN1Q9ULB1 1477 aa18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 WDR63Q8IWG1 891 aa18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 MYOM1P52179 1685 aa18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 QRICH2Q9H0J4 1663 aa18.35■□□□□ 0.53
SHROOM1-208ENST00000617339 HAP1P54257 671 aaPredicted RBP18.34■□□□□ 0.53
SHROOM1-208ENST00000617339 PKNOX2Q96KN3 472 aa18.34■□□□□ 0.53
SHROOM1-208ENST00000617339 NAP1L5Q96NT1 182 aaPredicted RBP18.34■□□□□ 0.53
SHROOM1-208ENST00000617339 CFAP74Q9C0B2 1584 aa18.34■□□□□ 0.53
SHROOM1-208ENST00000617339 MCM10Q7L590 875 aa18.34■□□□□ 0.53
SHROOM1-208ENST00000617339 PIK3C2BO00750 1634 aa18.34■□□□□ 0.53
SHROOM1-208ENST00000617339 ACEP12821 1306 aa18.33■□□□□ 0.52
SHROOM1-208ENST00000617339 PPIP5K1Q6PFW1 1433 aa18.33■□□□□ 0.52
SHROOM1-208ENST00000617339 RRAGDQ9NQL2 400 aaPredicted RBP18.32■□□□□ 0.52
SHROOM1-208ENST00000617339 SEC24BO95487 1268 aa18.32■□□□□ 0.52
SHROOM1-208ENST00000617339 TRIM27P14373 513 aa18.32■□□□□ 0.52
SHROOM1-208ENST00000617339 TNRQ92752 1358 aa18.32■□□□□ 0.52
SHROOM1-208ENST00000617339 C8orf34Q49A92 452 aa18.32■□□□□ 0.52
SHROOM1-208ENST00000617339 PRR36Q9H6K5 1346 aa18.32■□□□□ 0.52
SHROOM1-208ENST00000617339 MYO5BQ9ULV0 1848 aa18.31■□□□□ 0.52
SHROOM1-208ENST00000617339 VSIG10Q8N0Z9 540 aa18.31■□□□□ 0.52
SHROOM1-208ENST00000617339 TMEM57Q8N5G2 664 aa18.31■□□□□ 0.52
SHROOM1-208ENST00000617339 ZNF428Q96B54 188 aa18.31■□□□□ 0.52
SHROOM1-208ENST00000617339 PLEKHF1Q96S99 279 aa18.31■□□□□ 0.52
SHROOM1-208ENST00000617339 ABCC11Q96J66 1382 aa18.31■□□□□ 0.52
SHROOM1-208ENST00000617339 PDZRN3Q9UPQ7 1066 aa18.3■□□□□ 0.52
SHROOM1-208ENST00000617339 AMPHP49418 695 aa18.3■□□□□ 0.52
SHROOM1-208ENST00000617339 PDE3AQ14432 1141 aa18.3■□□□□ 0.52
SHROOM1-208ENST00000617339 KDM2BQ8NHM5 1336 aa18.3■□□□□ 0.52
SHROOM1-208ENST00000617339 INSRP06213 1382 aa18.29■□□□□ 0.52
SHROOM1-208ENST00000617339 FOXO3O43524 673 aa18.29■□□□□ 0.52
SHROOM1-208ENST00000617339 ARHGAP31Q2M1Z3 1444 aa18.29■□□□□ 0.52
SHROOM1-208ENST00000617339 NLRP6P59044 892 aa18.29■□□□□ 0.52
SHROOM1-208ENST00000617339 GZF1Q9H116 711 aaPredicted RBP18.29■□□□□ 0.52
SHROOM1-208ENST00000617339 PPLO60437 1756 aa18.29■□□□□ 0.52
SHROOM1-208ENST00000617339 A2ML1A8K2U0 1454 aa18.29■□□□□ 0.52
SHROOM1-208ENST00000617339 ROBO2Q9HCK4 1378 aa18.27■□□□□ 0.52
SHROOM1-208ENST00000617339 PTPRMP28827 1452 aa18.27■□□□□ 0.52
SHROOM1-208ENST00000617339 FCHSD2O94868 740 aa18.27■□□□□ 0.52
SHROOM1-208ENST00000617339 USHBP1Q8N6Y0 703 aa18.27■□□□□ 0.52
SHROOM1-208ENST00000617339 LNPKQ9C0E8 428 aa18.27■□□□□ 0.52
SHROOM1-208ENST00000617339 RICTORQ6R327 1708 aa18.27■□□□□ 0.51
SHROOM1-208ENST00000617339 THEMISQ8N1K5 641 aaPredicted RBP18.26■□□□□ 0.51
SHROOM1-208ENST00000617339 ALKQ9UM73 1620 aa18.26■□□□□ 0.51
SHROOM1-208ENST00000617339 MVPQ14764 893 aaKnown RBP18.25■□□□□ 0.51
SHROOM1-208ENST00000617339 C8orf58Q8NAV2 365 aa18.25■□□□□ 0.51
SHROOM1-208ENST00000617339 RWDD1Q9H446 243 aaPredicted RBP18.25■□□□□ 0.51
SHROOM1-208ENST00000617339 ATF7IPQ6VMQ6 1270 aa18.25■□□□□ 0.51
SHROOM1-208ENST00000617339 CLTCQ00610 1675 aaKnown RBP18.24■□□□□ 0.51
SHROOM1-208ENST00000617339 KCNA6P17658 529 aa18.24■□□□□ 0.51
SHROOM1-208ENST00000617339 SLC4A10Q6U841 1118 aa18.24■□□□□ 0.51
SHROOM1-208ENST00000617339 DIP2BQ9P265 1576 aa18.24■□□□□ 0.51
SHROOM1-208ENST00000617339 NFE2L2Q16236 605 aa18.23■□□□□ 0.51
SHROOM1-208ENST00000617339 PNNQ9H307 717 aaKnown RBP18.23■□□□□ 0.51
SHROOM1-208ENST00000617339 MBIPQ9NS73 344 aa18.23■□□□□ 0.51
SHROOM1-208ENST00000617339 MFAP1P55081 439 aaKnown RBP18.23■□□□□ 0.51
SHROOM1-208ENST00000617339 NGEFQ8N5V2 710 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms