RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 EFCAB6Q5THR3 1501 aa17.7■□□□□ 0.42
COL6A1-207ENST00000612273 FAM83GA6ND36 823 aa17.68■□□□□ 0.42
COL6A1-207ENST00000612273 MCM4P33991 863 aa17.68■□□□□ 0.42
COL6A1-207ENST00000612273 KIF1BO60333 1816 aa17.68■□□□□ 0.42
COL6A1-207ENST00000612273 RBM42Q9BTD8 480 aaKnown RBP17.68■□□□□ 0.42
COL6A1-207ENST00000612273 MROH1Q8NDA8 1641 aa17.68■□□□□ 0.42
COL6A1-207ENST00000612273 RRS1Q15050 365 aaKnown RBP17.67■□□□□ 0.42
COL6A1-207ENST00000612273 NLRP1Q9C000 1473 aa17.67■□□□□ 0.42
COL6A1-207ENST00000612273 ATAD2Q6PL18 1390 aa17.67■□□□□ 0.42
COL6A1-207ENST00000612273 IPO8O15397 1037 aaKnown RBP17.67■□□□□ 0.42
COL6A1-207ENST00000612273 HSP90AB1P08238 724 aaKnown RBP17.67■□□□□ 0.42
COL6A1-207ENST00000612273 ZBTB40Q9NUA8 1239 aa17.67■□□□□ 0.42
COL6A1-207ENST00000612273 INO80Q9ULG1 1556 aaPredicted RBP17.66■□□□□ 0.42
COL6A1-207ENST00000612273 IQSEC2Q5JU85 1478 aa17.65■□□□□ 0.42
COL6A1-207ENST00000612273 RPGRIP1LQ68CZ1 1315 aa17.65■□□□□ 0.42
COL6A1-207ENST00000612273 GOLGA6L3A6NEY3 463 aa17.65■□□□□ 0.42
COL6A1-207ENST00000612273 TRAK2O60296 914 aa17.65■□□□□ 0.42
COL6A1-207ENST00000612273 VWDEQ8N2E2 1590 aa17.65■□□□□ 0.42
COL6A1-207ENST00000612273 DEPDC5O75140 1603 aa17.65■□□□□ 0.42
COL6A1-207ENST00000612273 PLPPR3Q6T4P5 718 aa17.64■□□□□ 0.42
COL6A1-207ENST00000612273 CHD1LQ86WJ1 897 aa17.64■□□□□ 0.41
COL6A1-207ENST00000612273 NME9Q86XW9 330 aa17.64■□□□□ 0.41
COL6A1-207ENST00000612273 CHMP5Q9NZZ3 219 aa17.64■□□□□ 0.41
COL6A1-207ENST00000612273 XRCC6P12956 609 aaKnown RBP eCLIP17.64■□□□□ 0.41
COL6A1-207ENST00000612273 RRAGDQ9NQL2 400 aaPredicted RBP17.63■□□□□ 0.41
COL6A1-207ENST00000612273 HDAC1Q13547 482 aaPredicted RBP17.63■□□□□ 0.41
COL6A1-207ENST00000612273 KRT24Q2M2I5 525 aa17.63■□□□□ 0.41
COL6A1-207ENST00000612273 SMC5Q8IY18 1101 aa17.63■□□□□ 0.41
COL6A1-207ENST00000612273 POLKQ9UBT6 870 aa17.62■□□□□ 0.41
COL6A1-207ENST00000612273 TULP4Q9NRJ4 1543 aa17.62■□□□□ 0.41
COL6A1-207ENST00000612273 SHPRHQ149N8 1683 aa17.62■□□□□ 0.41
COL6A1-207ENST00000612273 AAMPQ13685 434 aa17.62■□□□□ 0.41
COL6A1-207ENST00000612273 QRICH2Q9H0J4 1663 aa17.62■□□□□ 0.41
COL6A1-207ENST00000612273 ADGRB1O14514 1584 aa17.62■□□□□ 0.41
COL6A1-207ENST00000612273 KIF16BQ96L93 1317 aa17.61■□□□□ 0.41
COL6A1-207ENST00000612273 CD2BP2O95400 341 aaKnown RBP17.61■□□□□ 0.41
COL6A1-207ENST00000612273 KIDINS220Q9ULH0 1771 aa17.61■□□□□ 0.41
COL6A1-207ENST00000612273 ADGRB3O60242 1522 aa17.61■□□□□ 0.41
COL6A1-207ENST00000612273 NRXN1Q9ULB1 1477 aa17.6■□□□□ 0.41
COL6A1-207ENST00000612273 TXNDC2Q86VQ3 553 aa17.6■□□□□ 0.41
COL6A1-207ENST00000612273 ABCC11Q96J66 1382 aa17.6■□□□□ 0.41
COL6A1-207ENST00000612273 NUCB1Q02818 461 aa17.59■□□□□ 0.41
COL6A1-207ENST00000612273 C8orf58Q8NAV2 365 aa17.59■□□□□ 0.41
COL6A1-207ENST00000612273 L1TD1Q5T7N2 865 aaKnown RBP17.59■□□□□ 0.41
COL6A1-207ENST00000612273 ABCA9Q8IUA7 1624 aa17.58■□□□□ 0.41
COL6A1-207ENST00000612273 C16orf71Q8IYS4 520 aaPredicted RBP17.58■□□□□ 0.41
COL6A1-207ENST00000612273 MBIPQ9NS73 344 aa17.58■□□□□ 0.41
COL6A1-207ENST00000612273 OSCARQ8IYS5 282 aa17.58■□□□□ 0.4
COL6A1-207ENST00000612273 RSPH6AQ9H0K4 717 aa17.58■□□□□ 0.4
COL6A1-207ENST00000612273 TWISTNBQ3B726 338 aaPredicted RBP17.57■□□□□ 0.4
COL6A1-207ENST00000612273 KIAA1210Q9ULL0 1709 aa17.57■□□□□ 0.4
COL6A1-207ENST00000612273 VAMP4O75379 141 aa17.57■□□□□ 0.4
COL6A1-207ENST00000612273 FCHSD2O94868 740 aa17.57■□□□□ 0.4
COL6A1-207ENST00000612273 CT47B1P0C2W7 299 aaPredicted RBP17.57■□□□□ 0.4
COL6A1-207ENST00000612273 CYB5RLQ6IPT4 315 aa17.57■□□□□ 0.4
COL6A1-207ENST00000612273 POGZQ7Z3K3 1410 aa17.56■□□□□ 0.4
COL6A1-207ENST00000612273 ZBTB7BO15156 539 aaPredicted RBP17.56■□□□□ 0.4
COL6A1-207ENST00000612273 PRKCSHP14314 528 aaPredicted RBP17.56■□□□□ 0.4
COL6A1-207ENST00000612273 FAM43AQ8N2R8 423 aa17.56■□□□□ 0.4
COL6A1-207ENST00000612273 SLC52A1Q9NWF4 448 aa17.56■□□□□ 0.4
COL6A1-207ENST00000612273 MIS18AQ9NYP9 233 aa17.56■□□□□ 0.4
COL6A1-207ENST00000612273 ARAP3Q8WWN8 1544 aa17.56■□□□□ 0.4
COL6A1-207ENST00000612273 NSD2O96028 1365 aa17.56■□□□□ 0.4
COL6A1-207ENST00000612273 GLI2P10070 1586 aa17.55■□□□□ 0.4
COL6A1-207ENST00000612273 TBC1D9Q6ZT07 1266 aa17.55■□□□□ 0.4
COL6A1-207ENST00000612273 TNPO1Q92973 898 aaKnown RBP17.55■□□□□ 0.4
COL6A1-207ENST00000612273 SIRT2Q8IXJ6 389 aa17.55■□□□□ 0.4
COL6A1-207ENST00000612273 NFE2L2Q16236 605 aa17.55■□□□□ 0.4
COL6A1-207ENST00000612273 YEATS2Q9ULM3 1422 aa17.55■□□□□ 0.4
COL6A1-207ENST00000612273 AEBP1Q8IUX7 1158 aa17.54■□□□□ 0.4
COL6A1-207ENST00000612273 SMARCA5O60264 1052 aaPredicted RBP17.54■□□□□ 0.4
COL6A1-207ENST00000612273 NCLP19338 710 aaKnown RBP17.54■□□□□ 0.4
COL6A1-207ENST00000612273 NAP1L5Q96NT1 182 aaPredicted RBP17.54■□□□□ 0.4
COL6A1-207ENST00000612273 PNNQ9H307 717 aaKnown RBP17.54■□□□□ 0.4
COL6A1-207ENST00000612273 OTUD7AQ8TE49 926 aaPredicted RBP17.53■□□□□ 0.4
COL6A1-207ENST00000612273 FOXD4L5Q5VV16 416 aaPredicted RBP17.53■□□□□ 0.4
COL6A1-207ENST00000612273 MRPL50Q8N5N7 158 aaKnown RBP17.53■□□□□ 0.4
COL6A1-207ENST00000612273 FOXD4L4Q8WXT5 416 aaPredicted RBP17.53■□□□□ 0.4
COL6A1-207ENST00000612273 MCM10Q7L590 875 aa17.52■□□□□ 0.4
COL6A1-207ENST00000612273 ABCC3O15438 1527 aa17.52■□□□□ 0.4
COL6A1-207ENST00000612273 SLC4A10Q6U841 1118 aa17.52■□□□□ 0.39
COL6A1-207ENST00000612273 YTHDC2Q9H6S0 1430 aaKnown RBP17.51■□□□□ 0.39
COL6A1-207ENST00000612273 SSFA2P28290 1259 aa17.51■□□□□ 0.39
COL6A1-207ENST00000612273 FRMPD1Q5SYB0 1578 aa17.51■□□□□ 0.39
COL6A1-207ENST00000612273 GNAI1P63096 354 aa17.5■□□□□ 0.39
COL6A1-207ENST00000612273 NECTIN2Q92692 538 aa17.5■□□□□ 0.39
COL6A1-207ENST00000612273 SETBP1Q9Y6X0 1596 aa17.5■□□□□ 0.39
COL6A1-207ENST00000612273 PPIP5K1Q6PFW1 1433 aa17.5■□□□□ 0.39
COL6A1-207ENST00000612273 ALDH1L2Q3SY69 923 aa17.5■□□□□ 0.39
COL6A1-207ENST00000612273 TPRNQ4KMQ1 711 aa17.5■□□□□ 0.39
COL6A1-207ENST00000612273 PLEKHG5O94827 1062 aa17.5■□□□□ 0.39
COL6A1-207ENST00000612273 IL16Q14005 1332 aa17.49■□□□□ 0.39
COL6A1-207ENST00000612273 SULT6B1Q6IMI4 303 aa17.49■□□□□ 0.39
COL6A1-207ENST00000612273 GAS2L2Q8NHY3 880 aa17.49■□□□□ 0.39
COL6A1-207ENST00000612273 COG3Q96JB2 828 aa17.49■□□□□ 0.39
COL6A1-207ENST00000612273 CAMSAP1Q5T5Y3 1602 aa17.49■□□□□ 0.39
COL6A1-207ENST00000612273 BMP2KLQ5H9B9 411 aa17.48■□□□□ 0.39
COL6A1-207ENST00000612273 GAS2L3Q86XJ1 694 aa17.48■□□□□ 0.39
COL6A1-207ENST00000612273 CHAMP1Q96JM3 812 aa17.48■□□□□ 0.39
COL6A1-207ENST00000612273 PUS7Q96PZ0 661 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms