RNA–Protein interactions for RNA: ENST00000606213.5

PTPRN-219, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-219ENST00000606213 CABP1Q9NZU7 370 aa33.2■■■□□ 2.91
PTPRN-219ENST00000606213 CLSPNQ9HAW4 1339 aa33.19■■■□□ 2.9
PTPRN-219ENST00000606213 ALS2Q96Q42 1657 aa33.19■■■□□ 2.9
PTPRN-219ENST00000606213 UNC5CLQ8IV45 518 aa33.18■■■□□ 2.9
PTPRN-219ENST00000606213 BCL9LQ86UU0 1499 aa33.18■■■□□ 2.9
PTPRN-219ENST00000606213 NUTM2GQ5VZR2 741 aa33.16■■■□□ 2.9
PTPRN-219ENST00000606213 ATRNO75882 1429 aa33.16■■■□□ 2.9
PTPRN-219ENST00000606213 ABTB2Q8N961 1025 aa33.15■■■□□ 2.9
PTPRN-219ENST00000606213 ABCA3Q99758 1704 aa33.14■■■□□ 2.89
PTPRN-219ENST00000606213 SLIT2O94813 1529 aa33.13■■■□□ 2.89
PTPRN-219ENST00000606213 SBNO2Q9Y2G9 1366 aa33.12■■■□□ 2.89
PTPRN-219ENST00000606213 CCER1Q8TC90 406 aaPredicted RBP33.12■■■□□ 2.89
PTPRN-219ENST00000606213 ATAD2Q6PL18 1390 aa33.11■■■□□ 2.89
PTPRN-219ENST00000606213 FAM83GA6ND36 823 aa33.11■■■□□ 2.89
PTPRN-219ENST00000606213 GJD4Q96KN9 370 aaPredicted RBP33.11■■■□□ 2.89
PTPRN-219ENST00000606213 TIMELESSQ9UNS1 1208 aa33.11■■■□□ 2.89
PTPRN-219ENST00000606213 CCDC9Q9Y3X0 531 aaKnown RBP33.11■■■□□ 2.89
PTPRN-219ENST00000606213 RGS12O14924 1447 aa33.11■■■□□ 2.89
PTPRN-219ENST00000606213 PRDM11Q9NQV5 511 aa33.09■■■□□ 2.89
PTPRN-219ENST00000606213 BRD4O60885 1362 aaPredicted RBP33.09■■■□□ 2.89
PTPRN-219ENST00000606213 NLRP13Q86W25 1043 aa33.06■■■□□ 2.88
PTPRN-219ENST00000606213 ZNF692Q9BU19 519 aaPredicted RBP33.06■■■□□ 2.88
PTPRN-219ENST00000606213 USP6P35125 1406 aa33.05■■■□□ 2.88
PTPRN-219ENST00000606213 BTG4Q9NY30 223 aa33.05■■■□□ 2.88
PTPRN-219ENST00000606213 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.05■■■□□ 2.88
PTPRN-219ENST00000606213 VPS72Q15906 364 aa33.03■■■□□ 2.88
PTPRN-219ENST00000606213 PLCH1Q4KWH8 1693 aa33.03■■■□□ 2.88
PTPRN-219ENST00000606213 ST20-MTHFSA0A0A6YYL1 179 aa33.02■■■□□ 2.88
PTPRN-219ENST00000606213 SLC24A1O60721 1099 aa33.02■■■□□ 2.88
PTPRN-219ENST00000606213 TMC1Q8TDI8 760 aa33.02■■■□□ 2.88
PTPRN-219ENST00000606213 ZC3H6P61129 1189 aaKnown RBP33.01■■■□□ 2.87
PTPRN-219ENST00000606213 NWD2Q9ULI1 1742 aa33.01■■■□□ 2.87
PTPRN-219ENST00000606213 NLRP6P59044 892 aa33■■■□□ 2.87
PTPRN-219ENST00000606213 KIAA0232Q92628 1395 aa32.99■■■□□ 2.87
PTPRN-219ENST00000606213 COL14A1Q05707 1796 aaKnown RBP32.99■■■□□ 2.87
PTPRN-219ENST00000606213 CRYBG1Q9Y4K1 1723 aa32.98■■■□□ 2.87
PTPRN-219ENST00000606213 CHRNA2Q15822 529 aa32.96■■■□□ 2.87
PTPRN-219ENST00000606213 UPF1Q92900 1129 aaKnown RBP eCLIP32.96■■■□□ 2.87
PTPRN-219ENST00000606213 KTN1Q86UP2 1357 aaKnown RBP32.96■■■□□ 2.87
PTPRN-219ENST00000606213 PHRF1Q9P1Y6 1649 aaKnown RBP32.95■■■□□ 2.87
PTPRN-219ENST00000606213 USP19O94966 1318 aa32.95■■■□□ 2.86
PTPRN-219ENST00000606213 USP47Q96K76 1375 aa32.95■■■□□ 2.86
PTPRN-219ENST00000606213 A0A0G2JS52 829 aa32.93■■■□□ 2.86
PTPRN-219ENST00000606213 GCP02774 474 aa32.93■■■□□ 2.86
PTPRN-219ENST00000606213 MYT1Q01538 1121 aa32.93■■■□□ 2.86
PTPRN-219ENST00000606213 HDGFL2Q7Z4V5 671 aaPredicted RBP32.93■■■□□ 2.86
PTPRN-219ENST00000606213 TTC21BQ7Z4L5 1316 aa32.93■■■□□ 2.86
PTPRN-219ENST00000606213 PUS7Q96PZ0 661 aaKnown RBP32.92■■■□□ 2.86
PTPRN-219ENST00000606213 TESK2Q96S53 571 aa32.91■■■□□ 2.86
PTPRN-219ENST00000606213 TTC21AQ8NDW8 1320 aa32.91■■■□□ 2.86
PTPRN-219ENST00000606213 GLI3P10071 1580 aa32.91■■■□□ 2.86
PTPRN-219ENST00000606213 ZBTB7CA1YPR0 619 aa32.9■■■□□ 2.86
PTPRN-219ENST00000606213 STRN4Q9NRL3 753 aa32.9■■■□□ 2.86
PTPRN-219ENST00000606213 TERF2IPQ9NYB0 399 aa32.9■■■□□ 2.86
PTPRN-219ENST00000606213 CPSF1Q10570 1443 aaKnown RBP32.9■■■□□ 2.86
PTPRN-219ENST00000606213 SSH2Q76I76 1423 aa32.89■■■□□ 2.86
PTPRN-219ENST00000606213 EVA1CP58658 441 aa32.89■■■□□ 2.86
PTPRN-219ENST00000606213 SLC12A5Q9H2X9 1139 aa32.89■■■□□ 2.86
PTPRN-219ENST00000606213 SEPT12Q8IYM1 358 aa32.88■■■□□ 2.85
PTPRN-219ENST00000606213 NRKQ7Z2Y5 1582 aa32.87■■■□□ 2.85
PTPRN-219ENST00000606213 TMF1P82094 1093 aa32.87■■■□□ 2.85
PTPRN-219ENST00000606213 AKAP12Q02952 1782 aa32.86■■■□□ 2.85
PTPRN-219ENST00000606213 CPDO75976 1380 aa32.86■■■□□ 2.85
PTPRN-219ENST00000606213 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.86■■■□□ 2.85
PTPRN-219ENST00000606213 NRAPQ86VF7 1730 aa32.85■■■□□ 2.85
PTPRN-219ENST00000606213 FAM98CQ17RN3 349 aaKnown RBP32.84■■■□□ 2.85
PTPRN-219ENST00000606213 SPATA31A5Q5VU36 1347 aa32.82■■■□□ 2.84
PTPRN-219ENST00000606213 SPATA31A7Q8IWB4 1347 aa32.82■■■□□ 2.84
PTPRN-219ENST00000606213 KCNH5Q8NCM2 988 aa32.82■■■□□ 2.84
PTPRN-219ENST00000606213 NINLQ9Y2I6 1382 aa32.82■■■□□ 2.84
PTPRN-219ENST00000606213 PIK3C2AO00443 1686 aa32.82■■■□□ 2.84
PTPRN-219ENST00000606213 SOX12O15370 315 aa32.81■■■□□ 2.84
PTPRN-219ENST00000606213 ONECUT3O60422 494 aaPredicted RBP32.8■■■□□ 2.84
PTPRN-219ENST00000606213 CDCA8Q53HL2 280 aa32.8■■■□□ 2.84
PTPRN-219ENST00000606213 SLIT3O75094 1523 aa32.77■■■□□ 2.84
PTPRN-219ENST00000606213 MON2Q7Z3U7 1717 aa32.77■■■□□ 2.84
PTPRN-219ENST00000606213 USP35Q9P2H5 1018 aa32.77■■■□□ 2.84
PTPRN-219ENST00000606213 CD163L1Q9NR16 1453 aa32.76■■■□□ 2.84
PTPRN-219ENST00000606213 A0A1W2PP64 1363 aa32.76■■■□□ 2.83
PTPRN-219ENST00000606213 KRT27Q7Z3Y8 459 aa32.76■■■□□ 2.83
PTPRN-219ENST00000606213 EDC4Q6P2E9 1401 aaKnown RBP32.76■■■□□ 2.83
PTPRN-219ENST00000606213 SPATA31A1Q5TZJ5 1347 aa32.75■■■□□ 2.83
PTPRN-219ENST00000606213 NME9Q86XW9 330 aa32.74■■■□□ 2.83
PTPRN-219ENST00000606213 CAMTA1Q9Y6Y1 1673 aa32.73■■■□□ 2.83
PTPRN-219ENST00000606213 AATKQ6ZMQ8 1374 aa32.72■■■□□ 2.83
PTPRN-219ENST00000606213 LARP1Q6PKG0 1096 aaKnown RBP32.71■■■□□ 2.83
PTPRN-219ENST00000606213 CCDC125Q86Z20 511 aa32.7■■■□□ 2.83
PTPRN-219ENST00000606213 ZRANB1Q9UGI0 708 aa32.7■■■□□ 2.83
PTPRN-219ENST00000606213 LMO7Q8WWI1 1683 aa32.69■■■□□ 2.82
PTPRN-219ENST00000606213 ARHGEF25Q86VW2 580 aa32.68■■■□□ 2.82
PTPRN-219ENST00000606213 USP31Q70CQ4 1352 aa32.68■■■□□ 2.82
PTPRN-219ENST00000606213 BRWD3Q6RI45 1802 aa32.67■■■□□ 2.82
PTPRN-219ENST00000606213 EIF4G2P78344 907 aaKnown RBP eCLIP32.66■■■□□ 2.82
PTPRN-219ENST00000606213 TCP11L2Q8N4U5 519 aa32.66■■■□□ 2.82
PTPRN-219ENST00000606213 COL5A2P05997 1499 aaPredicted RBP32.66■■■□□ 2.82
PTPRN-219ENST00000606213 SF3B2Q13435 895 aaKnown RBP32.65■■■□□ 2.82
PTPRN-219ENST00000606213 ANKRD36BQ8N2N9 1353 aa32.65■■■□□ 2.82
PTPRN-219ENST00000606213 CSB-PGBD3P0DP91 1061 aa32.63■■■□□ 2.81
PTPRN-219ENST00000606213 BARGINQ6ZT62 677 aa32.63■■■□□ 2.81
PTPRN-219ENST00000606213 TOM1L2Q6ZVM7 507 aa32.63■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms