RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 ATP7BP35670 1465 aa22.87■■□□□ 1.25
SHKBP1-228ENST00000602239 ZRANB1Q9UGI0 708 aa22.86■■□□□ 1.25
SHKBP1-228ENST00000602239 FAM98CQ17RN3 349 aaKnown RBP22.84■■□□□ 1.25
SHKBP1-228ENST00000602239 KRT27Q7Z3Y8 459 aa22.84■■□□□ 1.25
SHKBP1-228ENST00000602239 DEFB132Q7Z7B7 95 aa22.84■■□□□ 1.25
SHKBP1-228ENST00000602239 BLMP54132 1417 aaPredicted RBP22.83■■□□□ 1.25
SHKBP1-228ENST00000602239 NUTM2GQ5VZR2 741 aa22.83■■□□□ 1.25
SHKBP1-228ENST00000602239 ACEP12821 1306 aa22.82■■□□□ 1.24
SHKBP1-228ENST00000602239 NBPF8Q3BBV2 869 aa22.82■■□□□ 1.24
SHKBP1-228ENST00000602239 CCDC61Q9Y6R9 512 aa22.82■■□□□ 1.24
SHKBP1-228ENST00000602239 NRAPQ86VF7 1730 aa22.82■■□□□ 1.24
SHKBP1-228ENST00000602239 A0A0G2JS52 829 aa22.81■■□□□ 1.24
SHKBP1-228ENST00000602239 MYT1Q01538 1121 aa22.81■■□□□ 1.24
SHKBP1-228ENST00000602239 PRDM11Q9NQV5 511 aa22.81■■□□□ 1.24
SHKBP1-228ENST00000602239 COL14A1Q05707 1796 aaKnown RBP22.81■■□□□ 1.24
SHKBP1-228ENST00000602239 CRYBG1Q9Y4K1 1723 aa22.8■■□□□ 1.24
SHKBP1-228ENST00000602239 PLEKHG3A1L390 1219 aa22.8■■□□□ 1.24
SHKBP1-228ENST00000602239 CHRNA2Q15822 529 aa22.8■■□□□ 1.24
SHKBP1-228ENST00000602239 KIAA1210Q9ULL0 1709 aa22.79■■□□□ 1.24
SHKBP1-228ENST00000602239 POLR3AO14802 1390 aaPredicted RBP22.79■■□□□ 1.24
SHKBP1-228ENST00000602239 ZC3H6P61129 1189 aaKnown RBP22.79■■□□□ 1.24
SHKBP1-228ENST00000602239 ITSN1Q15811 1721 aa22.79■■□□□ 1.24
SHKBP1-228ENST00000602239 SPATA31A5Q5VU36 1347 aa22.79■■□□□ 1.24
SHKBP1-228ENST00000602239 SPATA31A7Q8IWB4 1347 aa22.79■■□□□ 1.24
SHKBP1-228ENST00000602239 KIAA0232Q92628 1395 aa22.78■■□□□ 1.24
SHKBP1-228ENST00000602239 L3MBTL2Q969R5 705 aa22.78■■□□□ 1.24
SHKBP1-228ENST00000602239 FAM182BQ5T319 152 aa22.77■■□□□ 1.24
SHKBP1-228ENST00000602239 SF3B2Q13435 895 aaKnown RBP22.76■■□□□ 1.23
SHKBP1-228ENST00000602239 SIN3AQ96ST3 1273 aa22.76■■□□□ 1.23
SHKBP1-228ENST00000602239 CABP2Q9NPB3 220 aa22.76■■□□□ 1.23
SHKBP1-228ENST00000602239 SRPK2P78362 688 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-228ENST00000602239 CENPJQ9HC77 1338 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-228ENST00000602239 TOPAZ1Q8N9V7 1692 aa22.74■■□□□ 1.23
SHKBP1-228ENST00000602239 ABTB2Q8N961 1025 aa22.73■■□□□ 1.23
SHKBP1-228ENST00000602239 STRN4Q9NRL3 753 aa22.73■■□□□ 1.23
SHKBP1-228ENST00000602239 SPATA31A1Q5TZJ5 1347 aa22.71■■□□□ 1.23
SHKBP1-228ENST00000602239 NEUROD1Q13562 356 aa22.7■■□□□ 1.22
SHKBP1-228ENST00000602239 PPIP5K1Q6PFW1 1433 aa22.7■■□□□ 1.22
SHKBP1-228ENST00000602239 PHRF1Q9P1Y6 1649 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-228ENST00000602239 CABP1Q9NZU7 370 aa22.69■■□□□ 1.22
SHKBP1-228ENST00000602239 USP35Q9P2H5 1018 aa22.68■■□□□ 1.22
SHKBP1-228ENST00000602239 USP19O94966 1318 aa22.66■■□□□ 1.22
SHKBP1-228ENST00000602239 GCP02774 474 aa22.66■■□□□ 1.22
SHKBP1-228ENST00000602239 EVA1CP58658 441 aa22.66■■□□□ 1.22
SHKBP1-228ENST00000602239 THSD7AQ9UPZ6 1657 aa22.65■■□□□ 1.22
SHKBP1-228ENST00000602239 BAG6P46379 1132 aa22.65■■□□□ 1.22
SHKBP1-228ENST00000602239 EN1Q05925 392 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-228ENST00000602239 LARP1Q6PKG0 1096 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-228ENST00000602239 NLRP13Q86W25 1043 aa22.65■■□□□ 1.22
SHKBP1-228ENST00000602239 CAMTA1Q9Y6Y1 1673 aa22.65■■□□□ 1.22
SHKBP1-228ENST00000602239 QRICH2Q9H0J4 1663 aa22.64■■□□□ 1.21
SHKBP1-228ENST00000602239 NRKQ7Z2Y5 1582 aa22.63■■□□□ 1.21
SHKBP1-228ENST00000602239 CPDO75976 1380 aa22.63■■□□□ 1.21
SHKBP1-228ENST00000602239 SSH2Q76I76 1423 aa22.62■■□□□ 1.21
SHKBP1-228ENST00000602239 PSDA5PKW4 1024 aaPredicted RBP22.6■■□□□ 1.21
SHKBP1-228ENST00000602239 NLRP6P59044 892 aa22.6■■□□□ 1.21
SHKBP1-228ENST00000602239 BARGINQ6ZT62 677 aa22.6■■□□□ 1.21
SHKBP1-228ENST00000602239 USP6P35125 1406 aa22.59■■□□□ 1.21
SHKBP1-228ENST00000602239 TRPM1Q7Z4N2 1603 aa22.59■■□□□ 1.21
SHKBP1-228ENST00000602239 EVC2Q86UK5 1308 aa22.58■■□□□ 1.21
SHKBP1-228ENST00000602239 TRIM37O94972 964 aa22.58■■□□□ 1.21
SHKBP1-228ENST00000602239 ROCK2O75116 1388 aaKnown RBP22.58■■□□□ 1.21
SHKBP1-228ENST00000602239 LMO7Q8WWI1 1683 aa22.58■■□□□ 1.2
SHKBP1-228ENST00000602239 ZBTB7CA1YPR0 619 aa22.57■■□□□ 1.2
SHKBP1-228ENST00000602239 FAM196AQ6ZSG2 479 aa22.57■■□□□ 1.2
SHKBP1-228ENST00000602239 TCP11L2Q8N4U5 519 aa22.57■■□□□ 1.2
SHKBP1-228ENST00000602239 BRD4O60885 1362 aaPredicted RBP22.57■■□□□ 1.2
SHKBP1-228ENST00000602239 EZH2Q15910 746 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-228ENST00000602239 RGPD1P0DJD0 1748 aa22.55■■□□□ 1.2
SHKBP1-228ENST00000602239 PDE3BQ13370 1112 aa22.55■■□□□ 1.2
SHKBP1-228ENST00000602239 CAMKK2Q96RR4 588 aa22.53■■□□□ 1.2
SHKBP1-228ENST00000602239 COL5A2P05997 1499 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-228ENST00000602239 TNS1Q9HBL0 1735 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-228ENST00000602239 DISP2A7MBM2 1401 aa22.52■■□□□ 1.2
SHKBP1-228ENST00000602239 APBA3O96018 575 aa22.51■■□□□ 1.19
SHKBP1-228ENST00000602239 R3HDM1Q15032 1099 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-228ENST00000602239 ZNF692Q9BU19 519 aaPredicted RBP22.51■■□□□ 1.19
SHKBP1-228ENST00000602239 AXIN2Q9Y2T1 843 aa22.51■■□□□ 1.19
SHKBP1-228ENST00000602239 THRAP3Q9Y2W1 955 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-228ENST00000602239 TTC21BQ7Z4L5 1316 aa22.51■■□□□ 1.19
SHKBP1-228ENST00000602239 SLIT3O75094 1523 aa22.5■■□□□ 1.19
SHKBP1-228ENST00000602239 AATKQ6ZMQ8 1374 aa22.5■■□□□ 1.19
SHKBP1-228ENST00000602239 PIK3C2AO00443 1686 aa22.49■■□□□ 1.19
SHKBP1-228ENST00000602239 CRB1P82279 1406 aa22.48■■□□□ 1.19
SHKBP1-228ENST00000602239 SOX12O15370 315 aa22.47■■□□□ 1.19
SHKBP1-228ENST00000602239 ARHGEF25Q86VW2 580 aa22.46■■□□□ 1.19
SHKBP1-228ENST00000602239 TOM1L2Q6ZVM7 507 aa22.45■■□□□ 1.18
SHKBP1-228ENST00000602239 CPSF1Q10570 1443 aaKnown RBP22.45■■□□□ 1.18
SHKBP1-228ENST00000602239 COL18A1P39060 1754 aa22.45■■□□□ 1.18
SHKBP1-228ENST00000602239 CARD11Q9BXL7 1154 aa22.44■■□□□ 1.18
SHKBP1-228ENST00000602239 KTN1Q86UP2 1357 aaKnown RBP22.43■■□□□ 1.18
SHKBP1-228ENST00000602239 AKAP12Q02952 1782 aa22.43■■□□□ 1.18
SHKBP1-228ENST00000602239 LRP5O75197 1615 aa22.42■■□□□ 1.18
SHKBP1-228ENST00000602239 TTC21AQ8NDW8 1320 aa22.42■■□□□ 1.18
SHKBP1-228ENST00000602239 KCNH5Q8NCM2 988 aa22.42■■□□□ 1.18
SHKBP1-228ENST00000602239 WDR17Q8IZU2 1322 aa22.41■■□□□ 1.18
SHKBP1-228ENST00000602239 PARP4Q9UKK3 1724 aaKnown RBP22.41■■□□□ 1.18
SHKBP1-228ENST00000602239 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.4■■□□□ 1.18
SHKBP1-228ENST00000602239 DDB1Q16531 1140 aa22.39■■□□□ 1.17
SHKBP1-228ENST00000602239 PARD3Q8TEW0 1356 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms