RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 ESCO1Q5FWF5 840 aa24.16■■□□□ 1.46
VRK3-225ENST00000601912 NME9Q86XW9 330 aa24.15■■□□□ 1.46
VRK3-225ENST00000601912 MSH6P52701 1360 aa24.14■■□□□ 1.45
VRK3-225ENST00000601912 COG3Q96JB2 828 aa24.14■■□□□ 1.45
VRK3-225ENST00000601912 TTC21AQ8NDW8 1320 aa24.13■■□□□ 1.45
VRK3-225ENST00000601912 CADPS2Q86UW7 1296 aa24.13■■□□□ 1.45
VRK3-225ENST00000601912 HNRNPUQ00839 825 aaKnown RBP eCLIP24.12■■□□□ 1.45
VRK3-225ENST00000601912 NRKQ7Z2Y5 1582 aa24.12■■□□□ 1.45
VRK3-225ENST00000601912 SSH2Q76I76 1423 aa24.12■■□□□ 1.45
VRK3-225ENST00000601912 LRRC7Q96NW7 1537 aa24.11■■□□□ 1.45
VRK3-225ENST00000601912 MTHFSP49914 203 aa24.11■■□□□ 1.45
VRK3-225ENST00000601912 CFAP53Q96M91 514 aa24.11■■□□□ 1.45
VRK3-225ENST00000601912 SCAF1Q9H7N4 1312 aaKnown RBP24.11■■□□□ 1.45
VRK3-225ENST00000601912 WDR43Q15061 677 aaKnown RBP eCLIP24.1■■□□□ 1.45
VRK3-225ENST00000601912 C1orf167Q5SNV9 1468 aa24.09■■□□□ 1.45
VRK3-225ENST00000601912 PSME1Q06323 249 aa24.08■■□□□ 1.44
VRK3-225ENST00000601912 ORAI2Q96SN7 254 aa24.08■■□□□ 1.44
VRK3-225ENST00000601912 MST1RQ04912 1400 aa24.06■■□□□ 1.44
VRK3-225ENST00000601912 ZRANB1Q9UGI0 708 aa24.06■■□□□ 1.44
VRK3-225ENST00000601912 INSRP06213 1382 aa24.05■■□□□ 1.44
VRK3-225ENST00000601912 XIRP1Q702N8 1843 aaKnown RBP24.04■■□□□ 1.44
VRK3-225ENST00000601912 AATKQ6ZMQ8 1374 aa24.03■■□□□ 1.44
VRK3-225ENST00000601912 PAK3O75914 559 aaPredicted RBP24.03■■□□□ 1.44
VRK3-225ENST00000601912 KIF1AQ12756 1690 aa24.03■■□□□ 1.44
VRK3-225ENST00000601912 OVOS2A0A0J9YW53 1432 aa24.02■■□□□ 1.44
VRK3-225ENST00000601912 OVOS2Q6IE36 1432 aa24.02■■□□□ 1.44
VRK3-225ENST00000601912 FOXO3O43524 673 aa24.02■■□□□ 1.44
VRK3-225ENST00000601912 ADAMTS8Q9UP79 889 aa24.02■■□□□ 1.44
VRK3-225ENST00000601912 USP31Q70CQ4 1352 aa24.01■■□□□ 1.43
VRK3-225ENST00000601912 ABTB2Q8N961 1025 aa24■■□□□ 1.43
VRK3-225ENST00000601912 POLKQ9UBT6 870 aa23.99■■□□□ 1.43
VRK3-225ENST00000601912 NLRP6P59044 892 aa23.99■■□□□ 1.43
VRK3-225ENST00000601912 ZBED9Q6R2W3 1325 aa23.97■■□□□ 1.43
VRK3-225ENST00000601912 PPM1GO15355 546 aaPredicted RBP23.97■■□□□ 1.43
VRK3-225ENST00000601912 NUDCQ9Y266 331 aa23.97■■□□□ 1.43
VRK3-225ENST00000601912 FBLN1P23142 703 aa23.96■■□□□ 1.43
VRK3-225ENST00000601912 BLMP54132 1417 aaPredicted RBP23.96■■□□□ 1.43
VRK3-225ENST00000601912 PIK3C2AO00443 1686 aa23.96■■□□□ 1.43
VRK3-225ENST00000601912 MAP2P11137 1827 aaKnown RBP23.96■■□□□ 1.43
VRK3-225ENST00000601912 PNPLA6Q8IY17 1366 aa23.96■■□□□ 1.43
VRK3-225ENST00000601912 KRT28Q7Z3Y7 464 aa23.95■■□□□ 1.43
VRK3-225ENST00000601912 AEBP2Q6ZN18 517 aaPredicted RBP23.95■■□□□ 1.42
VRK3-225ENST00000601912 SMG6Q86US8 1419 aaKnown RBP23.94■■□□□ 1.42
VRK3-225ENST00000601912 SLAIN2Q9P270 581 aa23.94■■□□□ 1.42
VRK3-225ENST00000601912 EMILIN1Q9Y6C2 1016 aa23.93■■□□□ 1.42
VRK3-225ENST00000601912 NPHP3Q7Z494 1330 aa23.93■■□□□ 1.42
VRK3-225ENST00000601912 DIAPH1O60610 1272 aaKnown RBP23.92■■□□□ 1.42
VRK3-225ENST00000601912 XPCQ01831 940 aaPredicted RBP23.92■■□□□ 1.42
VRK3-225ENST00000601912 RRS1Q15050 365 aaKnown RBP23.92■■□□□ 1.42
VRK3-225ENST00000601912 NUTM2GQ5VZR2 741 aa23.92■■□□□ 1.42
VRK3-225ENST00000601912 CDK12Q9NYV4 1490 aaPredicted RBP23.91■■□□□ 1.42
VRK3-225ENST00000601912 SHPRHQ149N8 1683 aa23.91■■□□□ 1.42
VRK3-225ENST00000601912 COL3A1P02461 1466 aaPredicted RBP23.9■■□□□ 1.42
VRK3-225ENST00000601912 USP54Q70EL1 1684 aa23.9■■□□□ 1.42
VRK3-225ENST00000601912 SOX12O15370 315 aa23.89■■□□□ 1.42
VRK3-225ENST00000601912 U2AF1L5P0DN76 240 aaPredicted RBP23.89■■□□□ 1.41
VRK3-225ENST00000601912 U2AF1Q01081 240 aaKnown RBP eCLIP23.89■■□□□ 1.41
VRK3-225ENST00000601912 BRINP3Q76B58 766 aa23.89■■□□□ 1.41
VRK3-225ENST00000601912 U2SURPO15042 1029 aaKnown RBP23.87■■□□□ 1.41
VRK3-225ENST00000601912 LMOD2Q6P5Q4 547 aa23.87■■□□□ 1.41
VRK3-225ENST00000601912 LTBP4Q8N2S1 1624 aa23.87■■□□□ 1.41
VRK3-225ENST00000601912 TRPM3Q9HCF6 1732 aaPredicted RBP23.86■■□□□ 1.41
VRK3-225ENST00000601912 SBNO1A3KN83 1393 aa23.86■■□□□ 1.41
VRK3-225ENST00000601912 KCNH5Q8NCM2 988 aa23.86■■□□□ 1.41
VRK3-225ENST00000601912 CCDC146Q8IYE0 955 aa23.85■■□□□ 1.41
VRK3-225ENST00000601912 MAP3K19Q56UN5 1328 aa23.84■■□□□ 1.41
VRK3-225ENST00000601912 SENP3-EIF4A1A0A087X0R7 540 aa23.83■■□□□ 1.41
VRK3-225ENST00000601912 DDX17Q92841 729 aaKnown RBP23.83■■□□□ 1.41
VRK3-225ENST00000601912 RUNDC1Q96C34 613 aa23.83■■□□□ 1.41
VRK3-225ENST00000601912 MARF1Q9Y4F3 1742 aaKnown RBP23.83■■□□□ 1.41
VRK3-225ENST00000601912 AMPHP49418 695 aa23.83■■□□□ 1.4
VRK3-225ENST00000601912 PNNQ9H307 717 aaKnown RBP23.83■■□□□ 1.4
VRK3-225ENST00000601912 KIF24Q5T7B8 1368 aa23.82■■□□□ 1.4
VRK3-225ENST00000601912 SALL2Q9Y467 1007 aaPredicted RBP23.82■■□□□ 1.4
VRK3-225ENST00000601912 IL13P35225 146 aa23.81■■□□□ 1.4
VRK3-225ENST00000601912 NGEFQ8N5V2 710 aa23.81■■□□□ 1.4
VRK3-225ENST00000601912 FLT4P35916 1363 aa23.81■■□□□ 1.4
VRK3-225ENST00000601912 PXDNQ92626 1479 aa23.8■■□□□ 1.4
VRK3-225ENST00000601912 APAF1O14727 1248 aa23.79■■□□□ 1.4
VRK3-225ENST00000601912 TNS3Q68CZ2 1445 aa23.78■■□□□ 1.4
VRK3-225ENST00000601912 HSP90AB2PQ58FF8 381 aa23.78■■□□□ 1.4
VRK3-225ENST00000601912 ALS2Q96Q42 1657 aa23.78■■□□□ 1.4
VRK3-225ENST00000601912 USP19O94966 1318 aa23.78■■□□□ 1.4
VRK3-225ENST00000601912 FCHSD2O94868 740 aa23.77■■□□□ 1.4
VRK3-225ENST00000601912 GCP02774 474 aa23.77■■□□□ 1.4
VRK3-225ENST00000601912 SPATA31A3Q5VYP0 1347 aa23.77■■□□□ 1.4
VRK3-225ENST00000601912 ARHGEF10O15013 1369 aa23.77■■□□□ 1.39
VRK3-225ENST00000601912 PEAK1Q9H792 1746 aa23.77■■□□□ 1.39
VRK3-225ENST00000601912 PDE3BQ13370 1112 aa23.76■■□□□ 1.39
VRK3-225ENST00000601912 SOS2Q07890 1332 aaPredicted RBP23.76■■□□□ 1.39
VRK3-225ENST00000601912 SLIT3O75094 1523 aa23.76■■□□□ 1.39
VRK3-225ENST00000601912 EIF4A2Q14240 407 aaKnown RBP23.76■■□□□ 1.39
VRK3-225ENST00000601912 RTL1A6NKG5 1358 aa23.75■■□□□ 1.39
VRK3-225ENST00000601912 NFAT5O94916 1531 aa23.75■■□□□ 1.39
VRK3-225ENST00000601912 NEFMP07197 916 aa23.74■■□□□ 1.39
VRK3-225ENST00000601912 HOXC9P31274 260 aa23.74■■□□□ 1.39
VRK3-225ENST00000601912 MAPK8IP3Q9UPT6 1336 aa23.74■■□□□ 1.39
VRK3-225ENST00000601912 TCP11L2Q8N4U5 519 aa23.73■■□□□ 1.39
VRK3-225ENST00000601912 PLEKHG5O94827 1062 aa23.73■■□□□ 1.39
VRK3-225ENST00000601912 PLEKHF1Q96S99 279 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms