RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 FAM98CQ17RN3 349 aaKnown RBP25.43■■□□□ 1.66
SHKBP1-223ENST00000600552 ALS2Q96Q42 1657 aa25.42■■□□□ 1.66
SHKBP1-223ENST00000600552 SF3B2Q13435 895 aaKnown RBP25.42■■□□□ 1.66
SHKBP1-223ENST00000600552 KRT27Q7Z3Y8 459 aa25.42■■□□□ 1.66
SHKBP1-223ENST00000600552 PRDM11Q9NQV5 511 aa25.42■■□□□ 1.66
SHKBP1-223ENST00000600552 DEFB132Q7Z7B7 95 aa25.4■■□□□ 1.66
SHKBP1-223ENST00000600552 ITSN1Q15811 1721 aa25.4■■□□□ 1.66
SHKBP1-223ENST00000600552 ATP7BP35670 1465 aa25.4■■□□□ 1.66
SHKBP1-223ENST00000600552 SRPK2P78362 688 aaKnown RBP25.39■■□□□ 1.66
SHKBP1-223ENST00000600552 CHRNA2Q15822 529 aa25.39■■□□□ 1.66
SHKBP1-223ENST00000600552 ACEP12821 1306 aa25.38■■□□□ 1.65
SHKBP1-223ENST00000600552 ZC3H6P61129 1189 aaKnown RBP25.38■■□□□ 1.65
SHKBP1-223ENST00000600552 EP400Q96L91 3159 aa25.38■■□□□ 1.65
SHKBP1-223ENST00000600552 COL14A1Q05707 1796 aaKnown RBP25.37■■□□□ 1.65
SHKBP1-223ENST00000600552 NBPF8Q3BBV2 869 aa25.37■■□□□ 1.65
SHKBP1-223ENST00000600552 STRN4Q9NRL3 753 aa25.37■■□□□ 1.65
SHKBP1-223ENST00000600552 CCDC61Q9Y6R9 512 aa25.37■■□□□ 1.65
SHKBP1-223ENST00000600552 BLMP54132 1417 aaPredicted RBP25.37■■□□□ 1.65
SHKBP1-223ENST00000600552 ONECUT3O60422 494 aaPredicted RBP25.36■■□□□ 1.65
SHKBP1-223ENST00000600552 NEUROD1Q13562 356 aa25.36■■□□□ 1.65
SHKBP1-223ENST00000600552 SIN3AQ96ST3 1273 aa25.36■■□□□ 1.65
SHKBP1-223ENST00000600552 CABP2Q9NPB3 220 aa25.35■■□□□ 1.65
SHKBP1-223ENST00000600552 KIAA1210Q9ULL0 1709 aa25.34■■□□□ 1.65
SHKBP1-223ENST00000600552 FAM182BQ5T319 152 aa25.34■■□□□ 1.65
SHKBP1-223ENST00000600552 L3MBTL2Q969R5 705 aa25.34■■□□□ 1.65
SHKBP1-223ENST00000600552 NRAPQ86VF7 1730 aa25.34■■□□□ 1.65
SHKBP1-223ENST00000600552 CENPJQ9HC77 1338 aaPredicted RBP25.34■■□□□ 1.65
SHKBP1-223ENST00000600552 KIAA0232Q92628 1395 aa25.33■■□□□ 1.65
SHKBP1-223ENST00000600552 ABTB2Q8N961 1025 aa25.32■■□□□ 1.64
SHKBP1-223ENST00000600552 SPATA31A5Q5VU36 1347 aa25.31■■□□□ 1.64
SHKBP1-223ENST00000600552 SPATA31A7Q8IWB4 1347 aa25.31■■□□□ 1.64
SHKBP1-223ENST00000600552 PLEKHG3A1L390 1219 aa25.3■■□□□ 1.64
SHKBP1-223ENST00000600552 EVA1CP58658 441 aa25.3■■□□□ 1.64
SHKBP1-223ENST00000600552 USP35Q9P2H5 1018 aa25.3■■□□□ 1.64
SHKBP1-223ENST00000600552 ZBTB7CA1YPR0 619 aa25.29■■□□□ 1.64
SHKBP1-223ENST00000600552 CRYBG1Q9Y4K1 1723 aa25.29■■□□□ 1.64
SHKBP1-223ENST00000600552 POLR3AO14802 1390 aaPredicted RBP25.28■■□□□ 1.64
SHKBP1-223ENST00000600552 PPIP5K1Q6PFW1 1433 aa25.27■■□□□ 1.64
SHKBP1-223ENST00000600552 TOPAZ1Q8N9V7 1692 aa25.26■■□□□ 1.63
SHKBP1-223ENST00000600552 PHRF1Q9P1Y6 1649 aaKnown RBP25.25■■□□□ 1.63
SHKBP1-223ENST00000600552 BAG6P46379 1132 aa25.24■■□□□ 1.63
SHKBP1-223ENST00000600552 CABP1Q9NZU7 370 aa25.24■■□□□ 1.63
SHKBP1-223ENST00000600552 QRICH2Q9H0J4 1663 aa25.23■■□□□ 1.63
SHKBP1-223ENST00000600552 SPATA31A1Q5TZJ5 1347 aa25.22■■□□□ 1.63
SHKBP1-223ENST00000600552 NLRP13Q86W25 1043 aa25.22■■□□□ 1.63
SHKBP1-223ENST00000600552 EN1Q05925 392 aaPredicted RBP25.2■■□□□ 1.62
SHKBP1-223ENST00000600552 PSDA5PKW4 1024 aaPredicted RBP25.19■■□□□ 1.62
SHKBP1-223ENST00000600552 NLRP6P59044 892 aa25.18■■□□□ 1.62
SHKBP1-223ENST00000600552 LARP1Q6PKG0 1096 aaKnown RBP25.18■■□□□ 1.62
SHKBP1-223ENST00000600552 ROCK2O75116 1388 aaKnown RBP25.18■■□□□ 1.62
SHKBP1-223ENST00000600552 EVC2Q86UK5 1308 aa25.17■■□□□ 1.62
SHKBP1-223ENST00000600552 GCP02774 474 aa25.17■■□□□ 1.62
SHKBP1-223ENST00000600552 USP19O94966 1318 aa25.14■■□□□ 1.62
SHKBP1-223ENST00000600552 NRKQ7Z2Y5 1582 aa25.14■■□□□ 1.62
SHKBP1-223ENST00000600552 SSH2Q76I76 1423 aa25.14■■□□□ 1.62
SHKBP1-223ENST00000600552 TRIM37O94972 964 aa25.14■■□□□ 1.62
SHKBP1-223ENST00000600552 PDE3BQ13370 1112 aa25.14■■□□□ 1.62
SHKBP1-223ENST00000600552 THSD7AQ9UPZ6 1657 aa25.13■■□□□ 1.61
SHKBP1-223ENST00000600552 CAMTA1Q9Y6Y1 1673 aa25.13■■□□□ 1.61
SHKBP1-223ENST00000600552 TRPM1Q7Z4N2 1603 aa25.12■■□□□ 1.61
SHKBP1-223ENST00000600552 SOX12O15370 315 aa25.12■■□□□ 1.61
SHKBP1-223ENST00000600552 FAM196AQ6ZSG2 479 aa25.11■■□□□ 1.61
SHKBP1-223ENST00000600552 TCP11L2Q8N4U5 519 aa25.11■■□□□ 1.61
SHKBP1-223ENST00000600552 SRCAPQ6ZRS2 3230 aa25.1■■□□□ 1.61
SHKBP1-223ENST00000600552 CPDO75976 1380 aa25.1■■□□□ 1.61
SHKBP1-223ENST00000600552 RGPD1P0DJD0 1748 aa25.1■■□□□ 1.61
SHKBP1-223ENST00000600552 USP6P35125 1406 aa25.1■■□□□ 1.61
SHKBP1-223ENST00000600552 EZH2Q15910 746 aaKnown RBP25.09■■□□□ 1.61
SHKBP1-223ENST00000600552 APBA3O96018 575 aa25.08■■□□□ 1.61
SHKBP1-223ENST00000600552 BARGINQ6ZT62 677 aa25.08■■□□□ 1.61
SHKBP1-223ENST00000600552 BRD4O60885 1362 aaPredicted RBP25.06■■□□□ 1.6
SHKBP1-223ENST00000600552 R3HDM1Q15032 1099 aaKnown RBP25.05■■□□□ 1.6
SHKBP1-223ENST00000600552 LMO7Q8WWI1 1683 aa25.04■■□□□ 1.6
SHKBP1-223ENST00000600552 TTC21BQ7Z4L5 1316 aa25.04■■□□□ 1.6
SHKBP1-223ENST00000600552 TOM1L2Q6ZVM7 507 aa25.03■■□□□ 1.6
SHKBP1-223ENST00000600552 ZNF692Q9BU19 519 aaPredicted RBP25.03■■□□□ 1.6
SHKBP1-223ENST00000600552 CARD11Q9BXL7 1154 aa25.03■■□□□ 1.6
SHKBP1-223ENST00000600552 COL5A2P05997 1499 aaPredicted RBP25.02■■□□□ 1.6
SHKBP1-223ENST00000600552 TNS1Q9HBL0 1735 aaKnown RBP25.01■■□□□ 1.59
SHKBP1-223ENST00000600552 THRAP3Q9Y2W1 955 aaKnown RBP25.01■■□□□ 1.59
SHKBP1-223ENST00000600552 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25■■□□□ 1.59
SHKBP1-223ENST00000600552 TMC1Q8TDI8 760 aa25■■□□□ 1.59
SHKBP1-223ENST00000600552 PIK3C2AO00443 1686 aa25■■□□□ 1.59
SHKBP1-223ENST00000600552 CSB-PGBD3P0DP91 1061 aa24.99■■□□□ 1.59
SHKBP1-223ENST00000600552 CRB1P82279 1406 aa24.99■■□□□ 1.59
SHKBP1-223ENST00000600552 AATKQ6ZMQ8 1374 aa24.99■■□□□ 1.59
SHKBP1-223ENST00000600552 KTN1Q86UP2 1357 aaKnown RBP24.99■■□□□ 1.59
SHKBP1-223ENST00000600552 CAMKK2Q96RR4 588 aa24.99■■□□□ 1.59
SHKBP1-223ENST00000600552 AXIN2Q9Y2T1 843 aa24.99■■□□□ 1.59
SHKBP1-223ENST00000600552 SLIT3O75094 1523 aa24.97■■□□□ 1.59
SHKBP1-223ENST00000600552 TONSLQ96HA7 1378 aa24.97■■□□□ 1.59
SHKBP1-223ENST00000600552 KCNH5Q8NCM2 988 aa24.96■■□□□ 1.59
SHKBP1-223ENST00000600552 AKAP12Q02952 1782 aa24.95■■□□□ 1.58
SHKBP1-223ENST00000600552 DISP2A7MBM2 1401 aa24.95■■□□□ 1.58
SHKBP1-223ENST00000600552 TTC21AQ8NDW8 1320 aa24.94■■□□□ 1.58
SHKBP1-223ENST00000600552 DDB1Q16531 1140 aa24.94■■□□□ 1.58
SHKBP1-223ENST00000600552 ARHGEF25Q86VW2 580 aa24.94■■□□□ 1.58
SHKBP1-223ENST00000600552 RGPD5Q99666 1765 aa24.92■■□□□ 1.58
SHKBP1-223ENST00000600552 WDR17Q8IZU2 1322 aa24.91■■□□□ 1.58
SHKBP1-223ENST00000600552 CPSF1Q10570 1443 aaKnown RBP24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms