RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 NWD2Q9ULI1 1742 aa22.68■■□□□ 1.22
VRK3-221ENST00000600284 ACEP12821 1306 aa22.68■■□□□ 1.22
VRK3-221ENST00000600284 SRPK2P78362 688 aaKnown RBP22.66■■□□□ 1.22
VRK3-221ENST00000600284 GLI3P10071 1580 aa22.66■■□□□ 1.22
VRK3-221ENST00000600284 TOPAZ1Q8N9V7 1692 aa22.65■■□□□ 1.22
VRK3-221ENST00000600284 ONECUT3O60422 494 aaPredicted RBP22.65■■□□□ 1.22
VRK3-221ENST00000600284 PLCH1Q4KWH8 1693 aa22.65■■□□□ 1.22
VRK3-221ENST00000600284 CCDC125Q86Z20 511 aa22.64■■□□□ 1.21
VRK3-221ENST00000600284 BTG4Q9NY30 223 aa22.63■■□□□ 1.21
VRK3-221ENST00000600284 TRPM1Q7Z4N2 1603 aa22.63■■□□□ 1.21
VRK3-221ENST00000600284 ROCK2O75116 1388 aaKnown RBP22.63■■□□□ 1.21
VRK3-221ENST00000600284 CABP2Q9NPB3 220 aa22.62■■□□□ 1.21
VRK3-221ENST00000600284 CCDC9Q9Y3X0 531 aaKnown RBP22.62■■□□□ 1.21
VRK3-221ENST00000600284 BRD4O60885 1362 aaPredicted RBP22.62■■□□□ 1.21
VRK3-221ENST00000600284 COL14A1Q05707 1796 aaKnown RBP22.61■■□□□ 1.21
VRK3-221ENST00000600284 PPIP5K1Q6PFW1 1433 aa22.61■■□□□ 1.21
VRK3-221ENST00000600284 EVC2Q86UK5 1308 aa22.6■■□□□ 1.21
VRK3-221ENST00000600284 TRIM26Q12899 539 aaPredicted RBP22.6■■□□□ 1.21
VRK3-221ENST00000600284 SEPT12Q8IYM1 358 aa22.6■■□□□ 1.21
VRK3-221ENST00000600284 CRYBG1Q9Y4K1 1723 aa22.6■■□□□ 1.21
VRK3-221ENST00000600284 QRICH2Q9H0J4 1663 aa22.59■■□□□ 1.21
VRK3-221ENST00000600284 PRDM11Q9NQV5 511 aa22.59■■□□□ 1.21
VRK3-221ENST00000600284 ABTB2Q8N961 1025 aa22.58■■□□□ 1.21
VRK3-221ENST00000600284 CABP1Q9NZU7 370 aa22.57■■□□□ 1.2
VRK3-221ENST00000600284 KIAA0232Q92628 1395 aa22.55■■□□□ 1.2
VRK3-221ENST00000600284 NRAPQ86VF7 1730 aa22.55■■□□□ 1.2
VRK3-221ENST00000600284 NUTM2GQ5VZR2 741 aa22.55■■□□□ 1.2
VRK3-221ENST00000600284 NLRP13Q86W25 1043 aa22.55■■□□□ 1.2
VRK3-221ENST00000600284 USP19O94966 1318 aa22.54■■□□□ 1.2
VRK3-221ENST00000600284 SPATA31A5Q5VU36 1347 aa22.54■■□□□ 1.2
VRK3-221ENST00000600284 SPATA31A7Q8IWB4 1347 aa22.54■■□□□ 1.2
VRK3-221ENST00000600284 ZC3H6P61129 1189 aaKnown RBP22.53■■□□□ 1.2
VRK3-221ENST00000600284 KRT27Q7Z3Y8 459 aa22.53■■□□□ 1.2
VRK3-221ENST00000600284 TONSLQ96HA7 1378 aa22.52■■□□□ 1.2
VRK3-221ENST00000600284 PHRF1Q9P1Y6 1649 aaKnown RBP22.52■■□□□ 1.2
VRK3-221ENST00000600284 USP6P35125 1406 aa22.51■■□□□ 1.19
VRK3-221ENST00000600284 FAM98CQ17RN3 349 aaKnown RBP22.51■■□□□ 1.19
VRK3-221ENST00000600284 ZNF692Q9BU19 519 aaPredicted RBP22.51■■□□□ 1.19
VRK3-221ENST00000600284 CPDO75976 1380 aa22.5■■□□□ 1.19
VRK3-221ENST00000600284 BLMP54132 1417 aaPredicted RBP22.5■■□□□ 1.19
VRK3-221ENST00000600284 EP400Q96L91 3159 aa22.5■■□□□ 1.19
VRK3-221ENST00000600284 CHRNA2Q15822 529 aa22.5■■□□□ 1.19
VRK3-221ENST00000600284 CARD11Q9BXL7 1154 aa22.5■■□□□ 1.19
VRK3-221ENST00000600284 SBNO2Q9Y2G9 1366 aa22.5■■□□□ 1.19
VRK3-221ENST00000600284 GCP02774 474 aa22.49■■□□□ 1.19
VRK3-221ENST00000600284 BRWD3Q6RI45 1802 aa22.49■■□□□ 1.19
VRK3-221ENST00000600284 A0A0G2JS52 829 aa22.48■■□□□ 1.19
VRK3-221ENST00000600284 MYT1Q01538 1121 aa22.48■■□□□ 1.19
VRK3-221ENST00000600284 SSH2Q76I76 1423 aa22.48■■□□□ 1.19
VRK3-221ENST00000600284 SPATA31A1Q5TZJ5 1347 aa22.47■■□□□ 1.19
VRK3-221ENST00000600284 NRKQ7Z2Y5 1582 aa22.46■■□□□ 1.19
VRK3-221ENST00000600284 NLRP6P59044 892 aa22.46■■□□□ 1.19
VRK3-221ENST00000600284 EVA1CP58658 441 aa22.45■■□□□ 1.18
VRK3-221ENST00000600284 SF3B2Q13435 895 aaKnown RBP22.45■■□□□ 1.18
VRK3-221ENST00000600284 STRN4Q9NRL3 753 aa22.45■■□□□ 1.18
VRK3-221ENST00000600284 ZRANB1Q9UGI0 708 aa22.42■■□□□ 1.18
VRK3-221ENST00000600284 CPSF1Q10570 1443 aaKnown RBP22.41■■□□□ 1.18
VRK3-221ENST00000600284 TTC21BQ7Z4L5 1316 aa22.41■■□□□ 1.18
VRK3-221ENST00000600284 TTC21AQ8NDW8 1320 aa22.41■■□□□ 1.18
VRK3-221ENST00000600284 BARGINQ6ZT62 677 aa22.41■■□□□ 1.18
VRK3-221ENST00000600284 CAMTA1Q9Y6Y1 1673 aa22.41■■□□□ 1.18
VRK3-221ENST00000600284 PUS7Q96PZ0 661 aaKnown RBP22.4■■□□□ 1.18
VRK3-221ENST00000600284 THSD7AQ9UPZ6 1657 aa22.39■■□□□ 1.18
VRK3-221ENST00000600284 THRAP3Q9Y2W1 955 aaKnown RBP22.39■■□□□ 1.17
VRK3-221ENST00000600284 SLIT3O75094 1523 aa22.39■■□□□ 1.17
VRK3-221ENST00000600284 LMO7Q8WWI1 1683 aa22.39■■□□□ 1.17
VRK3-221ENST00000600284 SLC24A1O60721 1099 aa22.38■■□□□ 1.17
VRK3-221ENST00000600284 LARP1Q6PKG0 1096 aaKnown RBP22.38■■□□□ 1.17
VRK3-221ENST00000600284 KCNH5Q8NCM2 988 aa22.38■■□□□ 1.17
VRK3-221ENST00000600284 AATKQ6ZMQ8 1374 aa22.38■■□□□ 1.17
VRK3-221ENST00000600284 KTN1Q86UP2 1357 aaKnown RBP22.38■■□□□ 1.17
VRK3-221ENST00000600284 TCP11L2Q8N4U5 519 aa22.37■■□□□ 1.17
VRK3-221ENST00000600284 DEFB132Q7Z7B7 95 aa22.36■■□□□ 1.17
VRK3-221ENST00000600284 USP35Q9P2H5 1018 aa22.36■■□□□ 1.17
VRK3-221ENST00000600284 AKAP12Q02952 1782 aa22.35■■□□□ 1.17
VRK3-221ENST00000600284 PIK3C2AO00443 1686 aa22.35■■□□□ 1.17
VRK3-221ENST00000600284 COL5A2P05997 1499 aaPredicted RBP22.34■■□□□ 1.17
VRK3-221ENST00000600284 BAG6P46379 1132 aa22.34■■□□□ 1.17
VRK3-221ENST00000600284 FAM196AQ6ZSG2 479 aa22.33■■□□□ 1.17
VRK3-221ENST00000600284 HDGFL2Q7Z4V5 671 aaPredicted RBP22.32■■□□□ 1.16
VRK3-221ENST00000600284 ARHGEF25Q86VW2 580 aa22.32■■□□□ 1.16
VRK3-221ENST00000600284 CRB1P82279 1406 aa22.31■■□□□ 1.16
VRK3-221ENST00000600284 ZBTB7CA1YPR0 619 aa22.31■■□□□ 1.16
VRK3-221ENST00000600284 PDE3BQ13370 1112 aa22.31■■□□□ 1.16
VRK3-221ENST00000600284 FAM182BQ5T319 152 aa22.31■■□□□ 1.16
VRK3-221ENST00000600284 TMC1Q8TDI8 760 aa22.31■■□□□ 1.16
VRK3-221ENST00000600284 TESK2Q96S53 571 aa22.3■■□□□ 1.16
VRK3-221ENST00000600284 TERF2IPQ9NYB0 399 aa22.3■■□□□ 1.16
VRK3-221ENST00000600284 CD163L1Q9NR16 1453 aa22.29■■□□□ 1.16
VRK3-221ENST00000600284 USP31Q70CQ4 1352 aa22.29■■□□□ 1.16
VRK3-221ENST00000600284 ST20-MTHFSA0A0A6YYL1 179 aa22.29■■□□□ 1.16
VRK3-221ENST00000600284 SLC12A5Q9H2X9 1139 aa22.29■■□□□ 1.16
VRK3-221ENST00000600284 TIMELESSQ9UNS1 1208 aa22.28■■□□□ 1.16
VRK3-221ENST00000600284 AXIN2Q9Y2T1 843 aa22.28■■□□□ 1.16
VRK3-221ENST00000600284 MON2Q7Z3U7 1717 aa22.28■■□□□ 1.16
VRK3-221ENST00000600284 C11orf95C9JLR9 678 aaPredicted RBP22.27■■□□□ 1.16
VRK3-221ENST00000600284 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.27■■□□□ 1.16
VRK3-221ENST00000600284 COL18A1P39060 1754 aa22.27■■□□□ 1.16
VRK3-221ENST00000600284 NINLQ9Y2I6 1382 aa22.26■■□□□ 1.15
VRK3-221ENST00000600284 RGPD1P0DJD0 1748 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms