RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 NRAPQ86VF7 1730 aa27.06■■□□□ 1.92
PNKP-213ENST00000599543 FAM83GA6ND36 823 aa27.05■■□□□ 1.92
PNKP-213ENST00000599543 NBPF1Q3BBV0 1214 aa27.05■■□□□ 1.92
PNKP-213ENST00000599543 QRICH2Q9H0J4 1663 aa27.01■■□□□ 1.92
PNKP-213ENST00000599543 CCDC125Q86Z20 511 aa27■■□□□ 1.91
PNKP-213ENST00000599543 BTG4Q9NY30 223 aa27■■□□□ 1.91
PNKP-213ENST00000599543 PHRF1Q9P1Y6 1649 aaKnown RBP27■■□□□ 1.91
PNKP-213ENST00000599543 POLR3AO14802 1390 aaPredicted RBP26.99■■□□□ 1.91
PNKP-213ENST00000599543 CENPJQ9HC77 1338 aaPredicted RBP26.99■■□□□ 1.91
PNKP-213ENST00000599543 SEPT12Q8IYM1 358 aa26.99■■□□□ 1.91
PNKP-213ENST00000599543 CCDC61Q9Y6R9 512 aa26.99■■□□□ 1.91
PNKP-213ENST00000599543 L3MBTL2Q969R5 705 aa26.97■■□□□ 1.91
PNKP-213ENST00000599543 ACEP12821 1306 aa26.96■■□□□ 1.91
PNKP-213ENST00000599543 TRPM1Q7Z4N2 1603 aa26.96■■□□□ 1.91
PNKP-213ENST00000599543 SRCAPQ6ZRS2 3230 aa26.95■■□□□ 1.9
PNKP-213ENST00000599543 SRPK2P78362 688 aaKnown RBP26.95■■□□□ 1.9
PNKP-213ENST00000599543 PRDM11Q9NQV5 511 aa26.95■■□□□ 1.9
PNKP-213ENST00000599543 A0A0G2JS52 829 aa26.94■■□□□ 1.9
PNKP-213ENST00000599543 ONECUT3O60422 494 aaPredicted RBP26.94■■□□□ 1.9
PNKP-213ENST00000599543 MYT1Q01538 1121 aa26.94■■□□□ 1.9
PNKP-213ENST00000599543 BLMP54132 1417 aaPredicted RBP26.93■■□□□ 1.9
PNKP-213ENST00000599543 PLEKHG3A1L390 1219 aa26.93■■□□□ 1.9
PNKP-213ENST00000599543 NBPF8Q3BBV2 869 aa26.93■■□□□ 1.9
PNKP-213ENST00000599543 PPIP5K1Q6PFW1 1433 aa26.92■■□□□ 1.9
PNKP-213ENST00000599543 SIN3AQ96ST3 1273 aa26.92■■□□□ 1.9
PNKP-213ENST00000599543 KRT27Q7Z3Y8 459 aa26.91■■□□□ 1.9
PNKP-213ENST00000599543 KIAA0232Q92628 1395 aa26.9■■□□□ 1.9
PNKP-213ENST00000599543 NEUROD1Q13562 356 aa26.9■■□□□ 1.9
PNKP-213ENST00000599543 FAM98CQ17RN3 349 aaKnown RBP26.9■■□□□ 1.9
PNKP-213ENST00000599543 NUTM2GQ5VZR2 741 aa26.9■■□□□ 1.9
PNKP-213ENST00000599543 CABP2Q9NPB3 220 aa26.89■■□□□ 1.9
PNKP-213ENST00000599543 NRKQ7Z2Y5 1582 aa26.88■■□□□ 1.89
PNKP-213ENST00000599543 ABTB2Q8N961 1025 aa26.87■■□□□ 1.89
PNKP-213ENST00000599543 SPATA31A5Q5VU36 1347 aa26.87■■□□□ 1.89
PNKP-213ENST00000599543 SPATA31A7Q8IWB4 1347 aa26.87■■□□□ 1.89
PNKP-213ENST00000599543 ROCK2O75116 1388 aaKnown RBP26.86■■□□□ 1.89
PNKP-213ENST00000599543 SF3B2Q13435 895 aaKnown RBP26.86■■□□□ 1.89
PNKP-213ENST00000599543 ZRANB1Q9UGI0 708 aa26.86■■□□□ 1.89
PNKP-213ENST00000599543 ZC3H6P61129 1189 aaKnown RBP26.85■■□□□ 1.89
PNKP-213ENST00000599543 CHRNA2Q15822 529 aa26.85■■□□□ 1.89
PNKP-213ENST00000599543 THSD7AQ9UPZ6 1657 aa26.84■■□□□ 1.89
PNKP-213ENST00000599543 PCGF6Q9BYE7 350 aa26.81■■□□□ 1.88
PNKP-213ENST00000599543 STRN4Q9NRL3 753 aa26.81■■□□□ 1.88
PNKP-213ENST00000599543 EVC2Q86UK5 1308 aa26.81■■□□□ 1.88
PNKP-213ENST00000599543 BRD4O60885 1362 aaPredicted RBP26.81■■□□□ 1.88
PNKP-213ENST00000599543 USP19O94966 1318 aa26.8■■□□□ 1.88
PNKP-213ENST00000599543 NLRP13Q86W25 1043 aa26.79■■□□□ 1.88
PNKP-213ENST00000599543 CABP1Q9NZU7 370 aa26.79■■□□□ 1.88
PNKP-213ENST00000599543 DEFB132Q7Z7B7 95 aa26.78■■□□□ 1.88
PNKP-213ENST00000599543 SPATA31A1Q5TZJ5 1347 aa26.78■■□□□ 1.88
PNKP-213ENST00000599543 USP6P35125 1406 aa26.78■■□□□ 1.88
PNKP-213ENST00000599543 RGPD1P0DJD0 1748 aa26.78■■□□□ 1.88
PNKP-213ENST00000599543 LMO7Q8WWI1 1683 aa26.77■■□□□ 1.88
PNKP-213ENST00000599543 CPDO75976 1380 aa26.77■■□□□ 1.88
PNKP-213ENST00000599543 SSH2Q76I76 1423 aa26.75■■□□□ 1.87
PNKP-213ENST00000599543 EVA1CP58658 441 aa26.75■■□□□ 1.87
PNKP-213ENST00000599543 CAMTA1Q9Y6Y1 1673 aa26.75■■□□□ 1.87
PNKP-213ENST00000599543 AKAP12Q02952 1782 aa26.74■■□□□ 1.87
PNKP-213ENST00000599543 GCP02774 474 aa26.73■■□□□ 1.87
PNKP-213ENST00000599543 PIK3C2AO00443 1686 aa26.73■■□□□ 1.87
PNKP-213ENST00000599543 USP35Q9P2H5 1018 aa26.72■■□□□ 1.87
PNKP-213ENST00000599543 BAG6P46379 1132 aa26.71■■□□□ 1.87
PNKP-213ENST00000599543 FAM182BQ5T319 152 aa26.71■■□□□ 1.87
PNKP-213ENST00000599543 NLRP6P59044 892 aa26.7■■□□□ 1.86
PNKP-213ENST00000599543 SLIT3O75094 1523 aa26.7■■□□□ 1.86
PNKP-213ENST00000599543 TONSLQ96HA7 1378 aa26.69■■□□□ 1.86
PNKP-213ENST00000599543 TNS1Q9HBL0 1735 aaKnown RBP26.68■■□□□ 1.86
PNKP-213ENST00000599543 LARP1Q6PKG0 1096 aaKnown RBP26.67■■□□□ 1.86
PNKP-213ENST00000599543 BARGINQ6ZT62 677 aa26.67■■□□□ 1.86
PNKP-213ENST00000599543 COL5A2P05997 1499 aaPredicted RBP26.67■■□□□ 1.86
PNKP-213ENST00000599543 ZBTB7CA1YPR0 619 aa26.66■■□□□ 1.86
PNKP-213ENST00000599543 TCP11L2Q8N4U5 519 aa26.65■■□□□ 1.86
PNKP-213ENST00000599543 ZNF692Q9BU19 519 aaPredicted RBP26.65■■□□□ 1.86
PNKP-213ENST00000599543 CARD11Q9BXL7 1154 aa26.65■■□□□ 1.86
PNKP-213ENST00000599543 SBNO2Q9Y2G9 1366 aa26.64■■□□□ 1.86
PNKP-213ENST00000599543 MON2Q7Z3U7 1717 aa26.62■■□□□ 1.85
PNKP-213ENST00000599543 FAM196AQ6ZSG2 479 aa26.62■■□□□ 1.85
PNKP-213ENST00000599543 PARP4Q9UKK3 1724 aaKnown RBP26.62■■□□□ 1.85
PNKP-213ENST00000599543 AATKQ6ZMQ8 1374 aa26.61■■□□□ 1.85
PNKP-213ENST00000599543 PDE3BQ13370 1112 aa26.61■■□□□ 1.85
PNKP-213ENST00000599543 THRAP3Q9Y2W1 955 aaKnown RBP26.61■■□□□ 1.85
PNKP-213ENST00000599543 CRB1P82279 1406 aa26.61■■□□□ 1.85
PNKP-213ENST00000599543 TTC21BQ7Z4L5 1316 aa26.61■■□□□ 1.85
PNKP-213ENST00000599543 DISP2A7MBM2 1401 aa26.6■■□□□ 1.85
PNKP-213ENST00000599543 CPSF1Q10570 1443 aaKnown RBP26.6■■□□□ 1.85
PNKP-213ENST00000599543 EN1Q05925 392 aaPredicted RBP26.6■■□□□ 1.85
PNKP-213ENST00000599543 COL18A1P39060 1754 aa26.6■■□□□ 1.85
PNKP-213ENST00000599543 KTN1Q86UP2 1357 aaKnown RBP26.59■■□□□ 1.85
PNKP-213ENST00000599543 TTC21AQ8NDW8 1320 aa26.59■■□□□ 1.85
PNKP-213ENST00000599543 RGPD5Q99666 1765 aa26.56■■□□□ 1.84
PNKP-213ENST00000599543 TRIM37O94972 964 aa26.56■■□□□ 1.84
PNKP-213ENST00000599543 KCNH5Q8NCM2 988 aa26.56■■□□□ 1.84
PNKP-213ENST00000599543 WNK3Q9BYP7 1800 aa26.55■■□□□ 1.84
PNKP-213ENST00000599543 SOX12O15370 315 aa26.54■■□□□ 1.84
PNKP-213ENST00000599543 LRRC37A3O60309 1634 aa26.53■■□□□ 1.84
PNKP-213ENST00000599543 LRP5O75197 1615 aa26.52■■□□□ 1.84
PNKP-213ENST00000599543 NFAT5O94916 1531 aa26.52■■□□□ 1.84
PNKP-213ENST00000599543 TOM1L2Q6ZVM7 507 aa26.52■■□□□ 1.84
PNKP-213ENST00000599543 USP54Q70EL1 1684 aa26.51■■□□□ 1.83
PNKP-213ENST00000599543 PSDA5PKW4 1024 aaPredicted RBP26.51■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms