RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 CENPJQ9HC77 1338 aaPredicted RBP15.42■□□□□ 0.06
VRK3-214ENST00000598553 GPRASP1Q5JY77 1395 aa15.41■□□□□ 0.06
VRK3-214ENST00000598553 FAM83GA6ND36 823 aa15.41■□□□□ 0.06
VRK3-214ENST00000598553 NGDNQ8NEJ9 315 aaKnown RBP15.41■□□□□ 0.06
VRK3-214ENST00000598553 GJD4Q96KN9 370 aaPredicted RBP15.41■□□□□ 0.06
VRK3-214ENST00000598553 CABP2Q9NPB3 220 aa15.41■□□□□ 0.06
VRK3-214ENST00000598553 AKAP12Q02952 1782 aa15.41■□□□□ 0.06
VRK3-214ENST00000598553 NUTM2GQ5VZR2 741 aa15.4■□□□□ 0.06
VRK3-214ENST00000598553 UNC5CLQ8IV45 518 aa15.4■□□□□ 0.06
VRK3-214ENST00000598553 PPIP5K1Q6PFW1 1433 aa15.4■□□□□ 0.06
VRK3-214ENST00000598553 ACEP12821 1306 aa15.4■□□□□ 0.06
VRK3-214ENST00000598553 HAP1P54257 671 aaPredicted RBP15.39■□□□□ 0.05
VRK3-214ENST00000598553 PIK3C2AO00443 1686 aa15.38■□□□□ 0.05
VRK3-214ENST00000598553 PAK3O75914 559 aaPredicted RBP15.38■□□□□ 0.05
VRK3-214ENST00000598553 ROCK2O75116 1388 aaKnown RBP15.37■□□□□ 0.05
VRK3-214ENST00000598553 LMO7Q8WWI1 1683 aa15.37■□□□□ 0.05
VRK3-214ENST00000598553 PLEKHG3A1L390 1219 aa15.36■□□□□ 0.05
VRK3-214ENST00000598553 SRPK2P78362 688 aaKnown RBP15.36■□□□□ 0.05
VRK3-214ENST00000598553 CCDC61Q9Y6R9 512 aa15.36■□□□□ 0.05
VRK3-214ENST00000598553 THSD7AQ9UPZ6 1657 aa15.35■□□□□ 0.05
VRK3-214ENST00000598553 KIAA0232Q92628 1395 aa15.35■□□□□ 0.05
VRK3-214ENST00000598553 MON2Q7Z3U7 1717 aa15.34■□□□□ 0.05
VRK3-214ENST00000598553 TRIM26Q12899 539 aaPredicted RBP15.34■□□□□ 0.05
VRK3-214ENST00000598553 CHRNA2Q15822 529 aa15.34■□□□□ 0.05
VRK3-214ENST00000598553 VPS72Q15906 364 aa15.34■□□□□ 0.05
VRK3-214ENST00000598553 BTG4Q9NY30 223 aa15.34■□□□□ 0.05
VRK3-214ENST00000598553 ATAD2Q6PL18 1390 aa15.34■□□□□ 0.05
VRK3-214ENST00000598553 RGPD5Q99666 1765 aa15.34■□□□□ 0.05
VRK3-214ENST00000598553 USP6P35125 1406 aa15.33■□□□□ 0.04
VRK3-214ENST00000598553 CAMTA1Q9Y6Y1 1673 aa15.32■□□□□ 0.04
VRK3-214ENST00000598553 CABP1Q9NZU7 370 aa15.32■□□□□ 0.04
VRK3-214ENST00000598553 SSH2Q76I76 1423 aa15.32■□□□□ 0.04
VRK3-214ENST00000598553 COL18A1P39060 1754 aa15.31■□□□□ 0.04
VRK3-214ENST00000598553 SEPT12Q8IYM1 358 aa15.31■□□□□ 0.04
VRK3-214ENST00000598553 USP19O94966 1318 aa15.31■□□□□ 0.04
VRK3-214ENST00000598553 SLIT3O75094 1523 aa15.3■□□□□ 0.04
VRK3-214ENST00000598553 ZC3H6P61129 1189 aaKnown RBP15.3■□□□□ 0.04
VRK3-214ENST00000598553 PRDM11Q9NQV5 511 aa15.3■□□□□ 0.04
VRK3-214ENST00000598553 CCDC9Q9Y3X0 531 aaKnown RBP15.3■□□□□ 0.04
VRK3-214ENST00000598553 TONSLQ96HA7 1378 aa15.29■□□□□ 0.04
VRK3-214ENST00000598553 EP400Q96L91 3159 aa15.29■□□□□ 0.04
VRK3-214ENST00000598553 CD163L1Q9NR16 1453 aa15.28■□□□□ 0.04
VRK3-214ENST00000598553 FAM98CQ17RN3 349 aaKnown RBP15.28■□□□□ 0.04
VRK3-214ENST00000598553 ABTB2Q8N961 1025 aa15.28■□□□□ 0.04
VRK3-214ENST00000598553 TNS1Q9HBL0 1735 aaKnown RBP15.28■□□□□ 0.04
VRK3-214ENST00000598553 WNK3Q9BYP7 1800 aa15.27■□□□□ 0.04
VRK3-214ENST00000598553 SPATA31A5Q5VU36 1347 aa15.27■□□□□ 0.04
VRK3-214ENST00000598553 SPATA31A7Q8IWB4 1347 aa15.27■□□□□ 0.04
VRK3-214ENST00000598553 ONECUT3O60422 494 aaPredicted RBP15.27■□□□□ 0.04
VRK3-214ENST00000598553 FAM182BQ5T319 152 aa15.27■□□□□ 0.04
VRK3-214ENST00000598553 EVC2Q86UK5 1308 aa15.26■□□□□ 0.03
VRK3-214ENST00000598553 CPSF1Q10570 1443 aaKnown RBP15.26■□□□□ 0.03
VRK3-214ENST00000598553 USP54Q70EL1 1684 aa15.25■□□□□ 0.03
VRK3-214ENST00000598553 CARD11Q9BXL7 1154 aa15.25■□□□□ 0.03
VRK3-214ENST00000598553 STRN4Q9NRL3 753 aa15.25■□□□□ 0.03
VRK3-214ENST00000598553 SBNO2Q9Y2G9 1366 aa15.24■□□□□ 0.03
VRK3-214ENST00000598553 CPDO75976 1380 aa15.24■□□□□ 0.03
VRK3-214ENST00000598553 NFAT5O94916 1531 aa15.23■□□□□ 0.03
VRK3-214ENST00000598553 SPATA31A1Q5TZJ5 1347 aa15.23■□□□□ 0.03
VRK3-214ENST00000598553 COL5A2P05997 1499 aaPredicted RBP15.23■□□□□ 0.03
VRK3-214ENST00000598553 DEFB132Q7Z7B7 95 aa15.23■□□□□ 0.03
VRK3-214ENST00000598553 ZRANB1Q9UGI0 708 aa15.23■□□□□ 0.03
VRK3-214ENST00000598553 LTN1O94822 1766 aa15.23■□□□□ 0.03
VRK3-214ENST00000598553 RGPD1P0DJD0 1748 aa15.23■□□□□ 0.03
VRK3-214ENST00000598553 A0A0G2JS52 829 aa15.22■□□□□ 0.03
VRK3-214ENST00000598553 GCP02774 474 aa15.22■□□□□ 0.03
VRK3-214ENST00000598553 MYT1Q01538 1121 aa15.22■□□□□ 0.03
VRK3-214ENST00000598553 LARP1Q6PKG0 1096 aaKnown RBP15.22■□□□□ 0.03
VRK3-214ENST00000598553 KRT27Q7Z3Y8 459 aa15.22■□□□□ 0.03
VRK3-214ENST00000598553 BLMP54132 1417 aaPredicted RBP15.22■□□□□ 0.03
VRK3-214ENST00000598553 TTC21BQ7Z4L5 1316 aa15.21■□□□□ 0.03
VRK3-214ENST00000598553 PARP4Q9UKK3 1724 aaKnown RBP15.21■□□□□ 0.03
VRK3-214ENST00000598553 LRRC37A3O60309 1634 aa15.21■□□□□ 0.02
VRK3-214ENST00000598553 ZBTB7CA1YPR0 619 aa15.2■□□□□ 0.02
VRK3-214ENST00000598553 NLRP6P59044 892 aa15.2■□□□□ 0.02
VRK3-214ENST00000598553 NLRP13Q86W25 1043 aa15.2■□□□□ 0.02
VRK3-214ENST00000598553 USP35Q9P2H5 1018 aa15.2■□□□□ 0.02
VRK3-214ENST00000598553 TESK2Q96S53 571 aa15.19■□□□□ 0.02
VRK3-214ENST00000598553 BRD4O60885 1362 aaPredicted RBP15.19■□□□□ 0.02
VRK3-214ENST00000598553 PEAK1Q9H792 1746 aa15.18■□□□□ 0.02
VRK3-214ENST00000598553 SOX12O15370 315 aa15.18■□□□□ 0.02
VRK3-214ENST00000598553 SLC12A5Q9H2X9 1139 aa15.18■□□□□ 0.02
VRK3-214ENST00000598553 KTN1Q86UP2 1357 aaKnown RBP15.18■□□□□ 0.02
VRK3-214ENST00000598553 SBF2Q86WG5 1849 aa15.17■□□□□ 0.02
VRK3-214ENST00000598553 AXIN2Q9Y2T1 843 aa15.17■□□□□ 0.02
VRK3-214ENST00000598553 MYOM1P52179 1685 aa15.16■□□□□ 0.02
VRK3-214ENST00000598553 A0A1W2PP64 1363 aa15.16■□□□□ 0.02
VRK3-214ENST00000598553 ST20-MTHFSA0A0A6YYL1 179 aa15.16■□□□□ 0.02
VRK3-214ENST00000598553 NME9Q86XW9 330 aa15.16■□□□□ 0.02
VRK3-214ENST00000598553 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.15■□□□□ 0.02
VRK3-214ENST00000598553 AATKQ6ZMQ8 1374 aa15.14■□□□□ 0.01
VRK3-214ENST00000598553 RGPD2P0DJD1 1756 aa15.14■□□□□ 0.01
VRK3-214ENST00000598553 EVA1CP58658 441 aa15.13■□□□□ 0.01
VRK3-214ENST00000598553 CRB1P82279 1406 aa15.13■□□□□ 0.01
VRK3-214ENST00000598553 TMC1Q8TDI8 760 aa15.13■□□□□ 0.01
VRK3-214ENST00000598553 TTC21AQ8NDW8 1320 aa15.13■□□□□ 0.01
VRK3-214ENST00000598553 RREB1Q92766 1687 aa15.12■□□□□ 0.01
VRK3-214ENST00000598553 USP47Q96K76 1375 aa15.12■□□□□ 0.01
VRK3-214ENST00000598553 NUP188Q5SRE5 1749 aa15.12■□□□□ 0.01
VRK3-214ENST00000598553 OVOS2A0A0J9YW53 1432 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms