RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 NGDNQ8NEJ9 315 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-211ENST00000595945 TRPM3Q9HCF6 1732 aaPredicted RBP20■□□□□ 0.79
SHKBP1-211ENST00000595945 MARF1Q9Y4F3 1742 aaKnown RBP20■□□□□ 0.79
SHKBP1-211ENST00000595945 PPP2R1AP30153 589 aa20■□□□□ 0.79
SHKBP1-211ENST00000595945 ESCO1Q5FWF5 840 aa20■□□□□ 0.79
SHKBP1-211ENST00000595945 ORAI2Q96SN7 254 aa20■□□□□ 0.79
SHKBP1-211ENST00000595945 PIK3C2AO00443 1686 aa20■□□□□ 0.79
SHKBP1-211ENST00000595945 MORC1Q86VD1 984 aa19.99■□□□□ 0.79
SHKBP1-211ENST00000595945 NLRP13Q86W25 1043 aa19.99■□□□□ 0.79
SHKBP1-211ENST00000595945 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.99■□□□□ 0.79
SHKBP1-211ENST00000595945 TTC21AQ8NDW8 1320 aa19.99■□□□□ 0.79
SHKBP1-211ENST00000595945 MAP2P11137 1827 aaKnown RBP19.98■□□□□ 0.79
SHKBP1-211ENST00000595945 GGNBP2Q9H3C7 697 aa19.98■□□□□ 0.79
SHKBP1-211ENST00000595945 NME9Q86XW9 330 aa19.97■□□□□ 0.79
SHKBP1-211ENST00000595945 OVOS2A0A0J9YW53 1432 aa19.96■□□□□ 0.79
SHKBP1-211ENST00000595945 OVOS2Q6IE36 1432 aa19.96■□□□□ 0.79
SHKBP1-211ENST00000595945 MRS2Q9HD23 443 aa19.96■□□□□ 0.79
SHKBP1-211ENST00000595945 USP31Q70CQ4 1352 aa19.95■□□□□ 0.79
SHKBP1-211ENST00000595945 SCAF1Q9H7N4 1312 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-211ENST00000595945 ZRANB1Q9UGI0 708 aa19.93■□□□□ 0.78
SHKBP1-211ENST00000595945 ALS2Q96Q42 1657 aa19.93■□□□□ 0.78
SHKBP1-211ENST00000595945 SLAIN2Q9P270 581 aa19.91■□□□□ 0.78
SHKBP1-211ENST00000595945 NHSL1Q5SYE7 1610 aa19.91■□□□□ 0.78
SHKBP1-211ENST00000595945 FOXO3O43524 673 aa19.9■□□□□ 0.78
SHKBP1-211ENST00000595945 COG3Q96JB2 828 aa19.9■□□□□ 0.78
SHKBP1-211ENST00000595945 AATKQ6ZMQ8 1374 aa19.9■□□□□ 0.78
SHKBP1-211ENST00000595945 PXDNQ92626 1479 aa19.9■□□□□ 0.78
SHKBP1-211ENST00000595945 PSME1Q06323 249 aa19.89■□□□□ 0.77
SHKBP1-211ENST00000595945 BRINP3Q76B58 766 aa19.89■□□□□ 0.77
SHKBP1-211ENST00000595945 PNISRQ8TF01 805 aaKnown RBP19.89■□□□□ 0.77
SHKBP1-211ENST00000595945 SMG6Q86US8 1419 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-211ENST00000595945 SHPRHQ149N8 1683 aa19.87■□□□□ 0.77
SHKBP1-211ENST00000595945 NPHP3Q7Z494 1330 aa19.87■□□□□ 0.77
SHKBP1-211ENST00000595945 TNNT2P45379 298 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-211ENST00000595945 KRT28Q7Z3Y7 464 aa19.87■□□□□ 0.77
SHKBP1-211ENST00000595945 IQSEC2Q5JU85 1478 aa19.86■□□□□ 0.77
SHKBP1-211ENST00000595945 COL3A1P02461 1466 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-211ENST00000595945 SBNO1A3KN83 1393 aa19.85■□□□□ 0.77
SHKBP1-211ENST00000595945 ROBO1Q9Y6N7 1651 aa19.84■□□□□ 0.77
SHKBP1-211ENST00000595945 INSRP06213 1382 aa19.84■□□□□ 0.77
SHKBP1-211ENST00000595945 MTHFSP49914 203 aa19.84■□□□□ 0.77
SHKBP1-211ENST00000595945 CRYBG1Q9Y4K1 1723 aa19.83■□□□□ 0.77
SHKBP1-211ENST00000595945 XPCQ01831 940 aaPredicted RBP19.83■□□□□ 0.77
SHKBP1-211ENST00000595945 POLKQ9UBT6 870 aa19.83■□□□□ 0.77
SHKBP1-211ENST00000595945 PNPLA6Q8IY17 1366 aa19.83■□□□□ 0.76
SHKBP1-211ENST00000595945 SLIT3O75094 1523 aa19.82■□□□□ 0.76
SHKBP1-211ENST00000595945 PAK3O75914 559 aaPredicted RBP19.82■□□□□ 0.76
SHKBP1-211ENST00000595945 ABTB2Q8N961 1025 aa19.82■□□□□ 0.76
SHKBP1-211ENST00000595945 PEAK1Q9H792 1746 aa19.82■□□□□ 0.76
SHKBP1-211ENST00000595945 CDK12Q9NYV4 1490 aaPredicted RBP19.81■□□□□ 0.76
SHKBP1-211ENST00000595945 AHDC1Q5TGY3 1603 aaPredicted RBP19.81■□□□□ 0.76
SHKBP1-211ENST00000595945 NLRP6P59044 892 aa19.81■□□□□ 0.76
SHKBP1-211ENST00000595945 DDX17Q92841 729 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-211ENST00000595945 TNS3Q68CZ2 1445 aa19.81■□□□□ 0.76
SHKBP1-211ENST00000595945 NFAT5O94916 1531 aa19.81■□□□□ 0.76
SHKBP1-211ENST00000595945 SOS2Q07890 1332 aaPredicted RBP19.8■□□□□ 0.76
SHKBP1-211ENST00000595945 FBLN1P23142 703 aa19.8■□□□□ 0.76
SHKBP1-211ENST00000595945 LTN1O94822 1766 aa19.8■□□□□ 0.76
SHKBP1-211ENST00000595945 USP19O94966 1318 aa19.79■□□□□ 0.76
SHKBP1-211ENST00000595945 MED1Q15648 1581 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-211ENST00000595945 FAM9BQ8IZU0 186 aa19.79■□□□□ 0.76
SHKBP1-211ENST00000595945 PHRF1Q9P1Y6 1649 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-211ENST00000595945 NUTM2GQ5VZR2 741 aa19.78■□□□□ 0.76
SHKBP1-211ENST00000595945 SPATA31A3Q5VYP0 1347 aa19.77■□□□□ 0.76
SHKBP1-211ENST00000595945 CFAP53Q96M91 514 aa19.77■□□□□ 0.76
SHKBP1-211ENST00000595945 EMILIN1Q9Y6C2 1016 aa19.77■□□□□ 0.76
SHKBP1-211ENST00000595945 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-211ENST00000595945 BLMP54132 1417 aaPredicted RBP19.76■□□□□ 0.75
SHKBP1-211ENST00000595945 RRS1Q15050 365 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-211ENST00000595945 ABCA3Q99758 1704 aa19.74■□□□□ 0.75
SHKBP1-211ENST00000595945 ARHGEF10O15013 1369 aa19.74■□□□□ 0.75
SHKBP1-211ENST00000595945 MAP3K19Q56UN5 1328 aa19.74■□□□□ 0.75
SHKBP1-211ENST00000595945 KIF24Q5T7B8 1368 aa19.73■□□□□ 0.75
SHKBP1-211ENST00000595945 KCNH5Q8NCM2 988 aa19.72■□□□□ 0.75
SHKBP1-211ENST00000595945 ADAMTS8Q9UP79 889 aa19.72■□□□□ 0.75
SHKBP1-211ENST00000595945 PHLPP1O60346 1717 aa19.71■□□□□ 0.75
SHKBP1-211ENST00000595945 TOM1O60784 492 aa19.71■□□□□ 0.75
SHKBP1-211ENST00000595945 WDR43Q15061 677 aaKnown RBP eCLIP19.71■□□□□ 0.75
SHKBP1-211ENST00000595945 CERKQ8TCT0 537 aa19.71■□□□□ 0.75
SHKBP1-211ENST00000595945 RTL1A6NKG5 1358 aa19.7■□□□□ 0.74
SHKBP1-211ENST00000595945 COL16A1Q07092 1604 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-211ENST00000595945 RGPD1P0DJD0 1748 aa19.7■□□□□ 0.74
SHKBP1-211ENST00000595945 FLT4P35916 1363 aa19.7■□□□□ 0.74
SHKBP1-211ENST00000595945 DIAPH1O60610 1272 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-211ENST00000595945 GCP02774 474 aa19.69■□□□□ 0.74
SHKBP1-211ENST00000595945 LMOD2Q6P5Q4 547 aa19.69■□□□□ 0.74
SHKBP1-211ENST00000595945 COL22A1Q8NFW1 1626 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-211ENST00000595945 COL18A1P39060 1754 aa19.68■□□□□ 0.74
SHKBP1-211ENST00000595945 PPM1GO15355 546 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-211ENST00000595945 SOX12O15370 315 aa19.68■□□□□ 0.74
SHKBP1-211ENST00000595945 IL13P35225 146 aa19.67■□□□□ 0.74
SHKBP1-211ENST00000595945 RGPD5Q99666 1765 aa19.66■□□□□ 0.74
SHKBP1-211ENST00000595945 NUDCQ9Y266 331 aa19.66■□□□□ 0.74
SHKBP1-211ENST00000595945 ABCC6O95255 1503 aa19.66■□□□□ 0.74
SHKBP1-211ENST00000595945 UBAP1LF5GYI3 381 aa19.65■□□□□ 0.74
SHKBP1-211ENST00000595945 HOXC9P31274 260 aa19.65■□□□□ 0.74
SHKBP1-211ENST00000595945 HNRNPUQ00839 825 aaKnown RBP eCLIP19.65■□□□□ 0.74
SHKBP1-211ENST00000595945 ARHGEF25Q86VW2 580 aa19.65■□□□□ 0.74
SHKBP1-211ENST00000595945 AMPHP49418 695 aa19.64■□□□□ 0.73
SHKBP1-211ENST00000595945 HSP90AB2PQ58FF8 381 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms