RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 UNC5CLQ8IV45 518 aa14.79□□□□□ -0.04
SHKBP1-210ENST00000595874 GJD4Q96KN9 370 aaPredicted RBP14.79□□□□□ -0.04
SHKBP1-210ENST00000595874 ALS2Q96Q42 1657 aa14.79□□□□□ -0.04
SHKBP1-210ENST00000595874 GLI3P10071 1580 aa14.78□□□□□ -0.04
SHKBP1-210ENST00000595874 RALGAPBQ86X10 1494 aa14.78□□□□□ -0.04
SHKBP1-210ENST00000595874 ROCK2O75116 1388 aaKnown RBP14.78□□□□□ -0.04
SHKBP1-210ENST00000595874 CHRNA2Q15822 529 aa14.78□□□□□ -0.04
SHKBP1-210ENST00000595874 TOPAZ1Q8N9V7 1692 aa14.77□□□□□ -0.04
SHKBP1-210ENST00000595874 SLIT2O94813 1529 aa14.77□□□□□ -0.04
SHKBP1-210ENST00000595874 TRIM26Q12899 539 aaPredicted RBP14.77□□□□□ -0.05
SHKBP1-210ENST00000595874 PPIP5K1Q6PFW1 1433 aa14.76□□□□□ -0.05
SHKBP1-210ENST00000595874 ZC3H6P61129 1189 aaKnown RBP14.76□□□□□ -0.05
SHKBP1-210ENST00000595874 BTG4Q9NY30 223 aa14.76□□□□□ -0.05
SHKBP1-210ENST00000595874 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.75□□□□□ -0.05
SHKBP1-210ENST00000595874 STRN4Q9NRL3 753 aa14.75□□□□□ -0.05
SHKBP1-210ENST00000595874 BRWD3Q6RI45 1802 aa14.74□□□□□ -0.05
SHKBP1-210ENST00000595874 CCDC61Q9Y6R9 512 aa14.74□□□□□ -0.05
SHKBP1-210ENST00000595874 CRYBG1Q9Y4K1 1723 aa14.74□□□□□ -0.05
SHKBP1-210ENST00000595874 PHRF1Q9P1Y6 1649 aaKnown RBP14.74□□□□□ -0.05
SHKBP1-210ENST00000595874 TONSLQ96HA7 1378 aa14.73□□□□□ -0.05
SHKBP1-210ENST00000595874 SEPT12Q8IYM1 358 aa14.73□□□□□ -0.05
SHKBP1-210ENST00000595874 PRDM11Q9NQV5 511 aa14.73□□□□□ -0.05
SHKBP1-210ENST00000595874 CABP1Q9NZU7 370 aa14.73□□□□□ -0.05
SHKBP1-210ENST00000595874 ATAD2Q6PL18 1390 aa14.73□□□□□ -0.05
SHKBP1-210ENST00000595874 FAM98CQ17RN3 349 aaKnown RBP14.72□□□□□ -0.05
SHKBP1-210ENST00000595874 FAM182BQ5T319 152 aa14.72□□□□□ -0.05
SHKBP1-210ENST00000595874 ABTB2Q8N961 1025 aa14.72□□□□□ -0.05
SHKBP1-210ENST00000595874 NRAPQ86VF7 1730 aa14.72□□□□□ -0.05
SHKBP1-210ENST00000595874 KIAA0232Q92628 1395 aa14.72□□□□□ -0.05
SHKBP1-210ENST00000595874 COL14A1Q05707 1796 aaKnown RBP14.71□□□□□ -0.05
SHKBP1-210ENST00000595874 SOX12O15370 315 aa14.71□□□□□ -0.05
SHKBP1-210ENST00000595874 VPS72Q15906 364 aa14.71□□□□□ -0.05
SHKBP1-210ENST00000595874 NWD2Q9ULI1 1742 aa14.71□□□□□ -0.05
SHKBP1-210ENST00000595874 PLEKHG3A1L390 1219 aa14.7□□□□□ -0.06
SHKBP1-210ENST00000595874 CARD11Q9BXL7 1154 aa14.7□□□□□ -0.06
SHKBP1-210ENST00000595874 USP35Q9P2H5 1018 aa14.7□□□□□ -0.06
SHKBP1-210ENST00000595874 EVC2Q86UK5 1308 aa14.69□□□□□ -0.06
SHKBP1-210ENST00000595874 PCGF6Q9BYE7 350 aa14.69□□□□□ -0.06
SHKBP1-210ENST00000595874 POLR3AO14802 1390 aaPredicted RBP14.69□□□□□ -0.06
SHKBP1-210ENST00000595874 NRKQ7Z2Y5 1582 aa14.67□□□□□ -0.06
SHKBP1-210ENST00000595874 EVA1CP58658 441 aa14.66□□□□□ -0.06
SHKBP1-210ENST00000595874 NLRP6P59044 892 aa14.66□□□□□ -0.06
SHKBP1-210ENST00000595874 KRT27Q7Z3Y8 459 aa14.65□□□□□ -0.06
SHKBP1-210ENST00000595874 DEFB132Q7Z7B7 95 aa14.65□□□□□ -0.06
SHKBP1-210ENST00000595874 TMC1Q8TDI8 760 aa14.65□□□□□ -0.06
SHKBP1-210ENST00000595874 ZRANB1Q9UGI0 708 aa14.64□□□□□ -0.07
SHKBP1-210ENST00000595874 USP6P35125 1406 aa14.64□□□□□ -0.07
SHKBP1-210ENST00000595874 NLRP13Q86W25 1043 aa14.63□□□□□ -0.07
SHKBP1-210ENST00000595874 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.63□□□□□ -0.07
SHKBP1-210ENST00000595874 SPATA31A5Q5VU36 1347 aa14.63□□□□□ -0.07
SHKBP1-210ENST00000595874 SPATA31A7Q8IWB4 1347 aa14.63□□□□□ -0.07
SHKBP1-210ENST00000595874 PIK3C2AO00443 1686 aa14.62□□□□□ -0.07
SHKBP1-210ENST00000595874 GCP02774 474 aa14.62□□□□□ -0.07
SHKBP1-210ENST00000595874 LARP1Q6PKG0 1096 aaKnown RBP14.62□□□□□ -0.07
SHKBP1-210ENST00000595874 CAMTA1Q9Y6Y1 1673 aa14.61□□□□□ -0.07
SHKBP1-210ENST00000595874 USP19O94966 1318 aa14.61□□□□□ -0.07
SHKBP1-210ENST00000595874 AKAP12Q02952 1782 aa14.6□□□□□ -0.07
SHKBP1-210ENST00000595874 SPATA31A1Q5TZJ5 1347 aa14.6□□□□□ -0.07
SHKBP1-210ENST00000595874 TTC21BQ7Z4L5 1316 aa14.6□□□□□ -0.07
SHKBP1-210ENST00000595874 KTN1Q86UP2 1357 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-210ENST00000595874 SF3B2Q13435 895 aaKnown RBP14.59□□□□□ -0.07
SHKBP1-210ENST00000595874 SLC12A5Q9H2X9 1139 aa14.59□□□□□ -0.07
SHKBP1-210ENST00000595874 SSH2Q76I76 1423 aa14.58□□□□□ -0.07
SHKBP1-210ENST00000595874 ST20-MTHFSA0A0A6YYL1 179 aa14.58□□□□□ -0.08
SHKBP1-210ENST00000595874 ONECUT3O60422 494 aaPredicted RBP14.57□□□□□ -0.08
SHKBP1-210ENST00000595874 NME9Q86XW9 330 aa14.57□□□□□ -0.08
SHKBP1-210ENST00000595874 LMO7Q8WWI1 1683 aa14.57□□□□□ -0.08
SHKBP1-210ENST00000595874 RGPD5Q99666 1765 aa14.57□□□□□ -0.08
SHKBP1-210ENST00000595874 BLMP54132 1417 aaPredicted RBP14.57□□□□□ -0.08
SHKBP1-210ENST00000595874 THSD7AQ9UPZ6 1657 aa14.55□□□□□ -0.08
SHKBP1-210ENST00000595874 AXIN2Q9Y2T1 843 aa14.55□□□□□ -0.08
SHKBP1-210ENST00000595874 SLIT3O75094 1523 aa14.55□□□□□ -0.08
SHKBP1-210ENST00000595874 MON2Q7Z3U7 1717 aa14.55□□□□□ -0.08
SHKBP1-210ENST00000595874 EN1Q05925 392 aaPredicted RBP14.54□□□□□ -0.08
SHKBP1-210ENST00000595874 COL5A2P05997 1499 aaPredicted RBP14.54□□□□□ -0.08
SHKBP1-210ENST00000595874 CD163L1Q9NR16 1453 aa14.53□□□□□ -0.08
SHKBP1-210ENST00000595874 CPDO75976 1380 aa14.53□□□□□ -0.08
SHKBP1-210ENST00000595874 PSDA5PKW4 1024 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-210ENST00000595874 TRIM37O94972 964 aa14.53□□□□□ -0.08
SHKBP1-210ENST00000595874 CSB-PGBD3P0DP91 1061 aa14.53□□□□□ -0.08
SHKBP1-210ENST00000595874 TOM1L2Q6ZVM7 507 aa14.53□□□□□ -0.08
SHKBP1-210ENST00000595874 HDGFL2Q7Z4V5 671 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-210ENST00000595874 ZNF692Q9BU19 519 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-210ENST00000595874 CPSF1Q10570 1443 aaKnown RBP14.52□□□□□ -0.08
SHKBP1-210ENST00000595874 PDE3BQ13370 1112 aa14.52□□□□□ -0.09
SHKBP1-210ENST00000595874 CCDC125Q86Z20 511 aa14.52□□□□□ -0.09
SHKBP1-210ENST00000595874 TCP11L2Q8N4U5 519 aa14.52□□□□□ -0.09
SHKBP1-210ENST00000595874 TTC21AQ8NDW8 1320 aa14.51□□□□□ -0.09
SHKBP1-210ENST00000595874 POLR3GLQ9BT43 218 aa14.51□□□□□ -0.09
SHKBP1-210ENST00000595874 COL18A1P39060 1754 aa14.51□□□□□ -0.09
SHKBP1-210ENST00000595874 A0A1W2PP64 1363 aa14.5□□□□□ -0.09
SHKBP1-210ENST00000595874 BRD4O60885 1362 aaPredicted RBP14.5□□□□□ -0.09
SHKBP1-210ENST00000595874 FBLN1P23142 703 aa14.5□□□□□ -0.09
SHKBP1-210ENST00000595874 BAG6P46379 1132 aa14.5□□□□□ -0.09
SHKBP1-210ENST00000595874 TESK2Q96S53 571 aa14.5□□□□□ -0.09
SHKBP1-210ENST00000595874 EP400Q96L91 3159 aa14.5□□□□□ -0.09
SHKBP1-210ENST00000595874 RGPD1P0DJD0 1748 aa14.49□□□□□ -0.09
SHKBP1-210ENST00000595874 USP47Q96K76 1375 aa14.49□□□□□ -0.09
SHKBP1-210ENST00000595874 SBNO2Q9Y2G9 1366 aa14.49□□□□□ -0.09
SHKBP1-210ENST00000595874 EZH2Q15910 746 aaKnown RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms