RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 EIF3AQ14152 1382 aaKnown RBP18.14■□□□□ 0.49
UPF1-203ENST00000594504 A0A0G2JS52 829 aa18.12■□□□□ 0.49
UPF1-203ENST00000594504 MYT1Q01538 1121 aa18.12■□□□□ 0.49
UPF1-203ENST00000594504 FAM98CQ17RN3 349 aaKnown RBP18.12■□□□□ 0.49
UPF1-203ENST00000594504 NUTM2GQ5VZR2 741 aa18.12■□□□□ 0.49
UPF1-203ENST00000594504 KRT27Q7Z3Y8 459 aa18.12■□□□□ 0.49
UPF1-203ENST00000594504 NRAPQ86VF7 1730 aa18.11■□□□□ 0.49
UPF1-203ENST00000594504 ATP7BP35670 1465 aa18.1■□□□□ 0.49
UPF1-203ENST00000594504 BLMP54132 1417 aaPredicted RBP18.1■□□□□ 0.49
UPF1-203ENST00000594504 FAM182BQ5T319 152 aa18.09■□□□□ 0.49
UPF1-203ENST00000594504 COL14A1Q05707 1796 aaKnown RBP18.09■□□□□ 0.49
UPF1-203ENST00000594504 CRYBG1Q9Y4K1 1723 aa18.09■□□□□ 0.49
UPF1-203ENST00000594504 ACEP12821 1306 aa18.08■□□□□ 0.49
UPF1-203ENST00000594504 CHRNA2Q15822 529 aa18.08■□□□□ 0.48
UPF1-203ENST00000594504 NBPF8Q3BBV2 869 aa18.08■□□□□ 0.48
UPF1-203ENST00000594504 ITSN1Q15811 1721 aa18.07■□□□□ 0.48
UPF1-203ENST00000594504 ZC3H6P61129 1189 aaKnown RBP18.07■□□□□ 0.48
UPF1-203ENST00000594504 SF3B2Q13435 895 aaKnown RBP18.07■□□□□ 0.48
UPF1-203ENST00000594504 PRDM11Q9NQV5 511 aa18.07■□□□□ 0.48
UPF1-203ENST00000594504 CCDC61Q9Y6R9 512 aa18.06■□□□□ 0.48
UPF1-203ENST00000594504 SPATA31A5Q5VU36 1347 aa18.05■□□□□ 0.48
UPF1-203ENST00000594504 SPATA31A7Q8IWB4 1347 aa18.05■□□□□ 0.48
UPF1-203ENST00000594504 STRN4Q9NRL3 753 aa18.05■□□□□ 0.48
UPF1-203ENST00000594504 KIAA1210Q9ULL0 1709 aa18.05■□□□□ 0.48
UPF1-203ENST00000594504 KIAA0232Q92628 1395 aa18.04■□□□□ 0.48
UPF1-203ENST00000594504 PLEKHG3A1L390 1219 aa18.04■□□□□ 0.48
UPF1-203ENST00000594504 CABP2Q9NPB3 220 aa18.04■□□□□ 0.48
UPF1-203ENST00000594504 SIN3AQ96ST3 1273 aa18.03■□□□□ 0.48
UPF1-203ENST00000594504 POLR3AO14802 1390 aaPredicted RBP18.03■□□□□ 0.48
UPF1-203ENST00000594504 SRPK2P78362 688 aaKnown RBP18.02■□□□□ 0.48
UPF1-203ENST00000594504 ABTB2Q8N961 1025 aa18.02■□□□□ 0.48
UPF1-203ENST00000594504 L3MBTL2Q969R5 705 aa18.02■□□□□ 0.48
UPF1-203ENST00000594504 TOPAZ1Q8N9V7 1692 aa18.02■□□□□ 0.47
UPF1-203ENST00000594504 PHRF1Q9P1Y6 1649 aaKnown RBP18.01■□□□□ 0.47
UPF1-203ENST00000594504 CENPJQ9HC77 1338 aaPredicted RBP18■□□□□ 0.47
UPF1-203ENST00000594504 USP35Q9P2H5 1018 aa18■□□□□ 0.47
UPF1-203ENST00000594504 SPATA31A1Q5TZJ5 1347 aa17.99■□□□□ 0.47
UPF1-203ENST00000594504 EP400Q96L91 3159 aa17.99■□□□□ 0.47
UPF1-203ENST00000594504 BAG6P46379 1132 aa17.98■□□□□ 0.47
UPF1-203ENST00000594504 EVA1CP58658 441 aa17.98■□□□□ 0.47
UPF1-203ENST00000594504 EN1Q05925 392 aaPredicted RBP17.98■□□□□ 0.47
UPF1-203ENST00000594504 NEUROD1Q13562 356 aa17.98■□□□□ 0.47
UPF1-203ENST00000594504 PPIP5K1Q6PFW1 1433 aa17.98■□□□□ 0.47
UPF1-203ENST00000594504 PSDA5PKW4 1024 aaPredicted RBP17.97■□□□□ 0.47
UPF1-203ENST00000594504 CABP1Q9NZU7 370 aa17.97■□□□□ 0.47
UPF1-203ENST00000594504 THSD7AQ9UPZ6 1657 aa17.96■□□□□ 0.47
UPF1-203ENST00000594504 LARP1Q6PKG0 1096 aaKnown RBP17.95■□□□□ 0.46
UPF1-203ENST00000594504 NLRP13Q86W25 1043 aa17.95■□□□□ 0.46
UPF1-203ENST00000594504 CAMTA1Q9Y6Y1 1673 aa17.95■□□□□ 0.46
UPF1-203ENST00000594504 QRICH2Q9H0J4 1663 aa17.94■□□□□ 0.46
UPF1-203ENST00000594504 ZBTB7CA1YPR0 619 aa17.94■□□□□ 0.46
UPF1-203ENST00000594504 GCP02774 474 aa17.94■□□□□ 0.46
UPF1-203ENST00000594504 NRKQ7Z2Y5 1582 aa17.94■□□□□ 0.46
UPF1-203ENST00000594504 PCGF6Q9BYE7 350 aa17.93■□□□□ 0.46
UPF1-203ENST00000594504 USP19O94966 1318 aa17.93■□□□□ 0.46
UPF1-203ENST00000594504 SSH2Q76I76 1423 aa17.92■□□□□ 0.46
UPF1-203ENST00000594504 TRIM37O94972 964 aa17.92■□□□□ 0.46
UPF1-203ENST00000594504 EZH2Q15910 746 aaKnown RBP17.92■□□□□ 0.46
UPF1-203ENST00000594504 NLRP6P59044 892 aa17.91■□□□□ 0.46
UPF1-203ENST00000594504 RGPD1P0DJD0 1748 aa17.91■□□□□ 0.46
UPF1-203ENST00000594504 BARGINQ6ZT62 677 aa17.9■□□□□ 0.46
UPF1-203ENST00000594504 CPDO75976 1380 aa17.9■□□□□ 0.46
UPF1-203ENST00000594504 FAM196AQ6ZSG2 479 aa17.89■□□□□ 0.45
UPF1-203ENST00000594504 TRPM1Q7Z4N2 1603 aa17.89■□□□□ 0.45
UPF1-203ENST00000594504 LMO7Q8WWI1 1683 aa17.89■□□□□ 0.45
UPF1-203ENST00000594504 PDE3BQ13370 1112 aa17.88■□□□□ 0.45
UPF1-203ENST00000594504 TCP11L2Q8N4U5 519 aa17.88■□□□□ 0.45
UPF1-203ENST00000594504 TNS1Q9HBL0 1735 aaKnown RBP17.88■□□□□ 0.45
UPF1-203ENST00000594504 EVC2Q86UK5 1308 aa17.88■□□□□ 0.45
UPF1-203ENST00000594504 USP6P35125 1406 aa17.88■□□□□ 0.45
UPF1-203ENST00000594504 APBA3O96018 575 aa17.87■□□□□ 0.45
UPF1-203ENST00000594504 R3HDM1Q15032 1099 aaKnown RBP17.87■□□□□ 0.45
UPF1-203ENST00000594504 CAMKK2Q96RR4 588 aa17.87■□□□□ 0.45
UPF1-203ENST00000594504 ROCK2O75116 1388 aaKnown RBP17.87■□□□□ 0.45
UPF1-203ENST00000594504 COL5A2P05997 1499 aaPredicted RBP17.84■□□□□ 0.45
UPF1-203ENST00000594504 BRD4O60885 1362 aaPredicted RBP17.84■□□□□ 0.45
UPF1-203ENST00000594504 AXIN2Q9Y2T1 843 aa17.84■□□□□ 0.45
UPF1-203ENST00000594504 SOX12O15370 315 aa17.83■□□□□ 0.44
UPF1-203ENST00000594504 THRAP3Q9Y2W1 955 aaKnown RBP17.83■□□□□ 0.44
UPF1-203ENST00000594504 DISP2A7MBM2 1401 aa17.82■□□□□ 0.44
UPF1-203ENST00000594504 TTC21BQ7Z4L5 1316 aa17.82■□□□□ 0.44
UPF1-203ENST00000594504 PIK3C2AO00443 1686 aa17.82■□□□□ 0.44
UPF1-203ENST00000594504 SLIT3O75094 1523 aa17.82■□□□□ 0.44
UPF1-203ENST00000594504 ZNF692Q9BU19 519 aaPredicted RBP17.81■□□□□ 0.44
UPF1-203ENST00000594504 CRB1P82279 1406 aa17.81■□□□□ 0.44
UPF1-203ENST00000594504 AATKQ6ZMQ8 1374 aa17.8■□□□□ 0.44
UPF1-203ENST00000594504 LRP5O75197 1615 aa17.8■□□□□ 0.44
UPF1-203ENST00000594504 TOM1L2Q6ZVM7 507 aa17.8■□□□□ 0.44
UPF1-203ENST00000594504 COL18A1P39060 1754 aa17.8■□□□□ 0.44
UPF1-203ENST00000594504 AKAP12Q02952 1782 aa17.79■□□□□ 0.44
UPF1-203ENST00000594504 RGPD5Q99666 1765 aa17.79■□□□□ 0.44
UPF1-203ENST00000594504 ARHGEF25Q86VW2 580 aa17.78■□□□□ 0.44
UPF1-203ENST00000594504 PARP4Q9UKK3 1724 aaKnown RBP17.77■□□□□ 0.44
UPF1-203ENST00000594504 CPSF1Q10570 1443 aaKnown RBP17.76■□□□□ 0.43
UPF1-203ENST00000594504 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.76■□□□□ 0.43
UPF1-203ENST00000594504 CARD11Q9BXL7 1154 aa17.76■□□□□ 0.43
UPF1-203ENST00000594504 KTN1Q86UP2 1357 aaKnown RBP17.76■□□□□ 0.43
UPF1-203ENST00000594504 DDB1Q16531 1140 aa17.75■□□□□ 0.43
UPF1-203ENST00000594504 PTF1AQ7RTS3 328 aa17.75■□□□□ 0.43
UPF1-203ENST00000594504 KCNH5Q8NCM2 988 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms