RNA–Protein interactions for RNA: ENST00000594387.1

IRF3-208, Transcript of interferon regulatory factor 3, humanhuman

TSL 3

Gene IRF3, Length 800 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-208ENST00000594387 CDK12Q9NYV4 1490 aaPredicted RBP24.58■■□□□ 1.53
IRF3-208ENST00000594387 POLR3AO14802 1390 aaPredicted RBP24.57■■□□□ 1.52
IRF3-208ENST00000594387 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.57■■□□□ 1.52
IRF3-208ENST00000594387 CLSPNQ9HAW4 1339 aa24.57■■□□□ 1.52
IRF3-208ENST00000594387 NWD2Q9ULI1 1742 aa24.55■■□□□ 1.52
IRF3-208ENST00000594387 UNC5CLQ8IV45 518 aa24.54■■□□□ 1.52
IRF3-208ENST00000594387 PLCH1Q4KWH8 1693 aa24.53■■□□□ 1.52
IRF3-208ENST00000594387 CABP1Q9NZU7 370 aa24.53■■□□□ 1.52
IRF3-208ENST00000594387 ABTB2Q8N961 1025 aa24.52■■□□□ 1.52
IRF3-208ENST00000594387 TIMELESSQ9UNS1 1208 aa24.52■■□□□ 1.52
IRF3-208ENST00000594387 ATRNO75882 1429 aa24.52■■□□□ 1.52
IRF3-208ENST00000594387 BCL9LQ86UU0 1499 aa24.51■■□□□ 1.51
IRF3-208ENST00000594387 BRD4O60885 1362 aaPredicted RBP24.51■■□□□ 1.51
IRF3-208ENST00000594387 SLC24A1O60721 1099 aa24.5■■□□□ 1.51
IRF3-208ENST00000594387 ATAD2Q6PL18 1390 aa24.5■■□□□ 1.51
IRF3-208ENST00000594387 SLIT2O94813 1529 aa24.5■■□□□ 1.51
IRF3-208ENST00000594387 COL14A1Q05707 1796 aaKnown RBP24.49■■□□□ 1.51
IRF3-208ENST00000594387 NUTM2GQ5VZR2 741 aa24.49■■□□□ 1.51
IRF3-208ENST00000594387 CCER1Q8TC90 406 aaPredicted RBP24.49■■□□□ 1.51
IRF3-208ENST00000594387 ZNF692Q9BU19 519 aaPredicted RBP24.49■■□□□ 1.51
IRF3-208ENST00000594387 CCDC9Q9Y3X0 531 aaKnown RBP24.49■■□□□ 1.51
IRF3-208ENST00000594387 SBNO2Q9Y2G9 1366 aa24.49■■□□□ 1.51
IRF3-208ENST00000594387 CRYBG1Q9Y4K1 1723 aa24.49■■□□□ 1.51
IRF3-208ENST00000594387 GJD4Q96KN9 370 aaPredicted RBP24.48■■□□□ 1.51
IRF3-208ENST00000594387 FAM83GA6ND36 823 aa24.47■■□□□ 1.51
IRF3-208ENST00000594387 NLRP13Q86W25 1043 aa24.47■■□□□ 1.51
IRF3-208ENST00000594387 PRDM11Q9NQV5 511 aa24.46■■□□□ 1.51
IRF3-208ENST00000594387 AKAP12Q02952 1782 aa24.46■■□□□ 1.51
IRF3-208ENST00000594387 PHRF1Q9P1Y6 1649 aaKnown RBP24.46■■□□□ 1.51
IRF3-208ENST00000594387 RGS12O14924 1447 aa24.45■■□□□ 1.51
IRF3-208ENST00000594387 BTG4Q9NY30 223 aa24.43■■□□□ 1.5
IRF3-208ENST00000594387 USP6P35125 1406 aa24.43■■□□□ 1.5
IRF3-208ENST00000594387 VPS72Q15906 364 aa24.42■■□□□ 1.5
IRF3-208ENST00000594387 TMC1Q8TDI8 760 aa24.42■■□□□ 1.5
IRF3-208ENST00000594387 ST20-MTHFSA0A0A6YYL1 179 aa24.4■■□□□ 1.5
IRF3-208ENST00000594387 NLRP6P59044 892 aa24.4■■□□□ 1.5
IRF3-208ENST00000594387 ZC3H6P61129 1189 aaKnown RBP24.4■■□□□ 1.5
IRF3-208ENST00000594387 NRAPQ86VF7 1730 aa24.38■■□□□ 1.49
IRF3-208ENST00000594387 PUS7Q96PZ0 661 aaKnown RBP24.38■■□□□ 1.49
IRF3-208ENST00000594387 KTN1Q86UP2 1357 aaKnown RBP24.38■■□□□ 1.49
IRF3-208ENST00000594387 HDGFL2Q7Z4V5 671 aaPredicted RBP24.37■■□□□ 1.49
IRF3-208ENST00000594387 KIAA0232Q92628 1395 aa24.37■■□□□ 1.49
IRF3-208ENST00000594387 EVA1CP58658 441 aa24.36■■□□□ 1.49
IRF3-208ENST00000594387 UPF1Q92900 1129 aaKnown RBP eCLIP24.36■■□□□ 1.49
IRF3-208ENST00000594387 GLI3P10071 1580 aa24.36■■□□□ 1.49
IRF3-208ENST00000594387 TTC21AQ8NDW8 1320 aa24.35■■□□□ 1.49
IRF3-208ENST00000594387 A0A0G2JS52 829 aa24.35■■□□□ 1.49
IRF3-208ENST00000594387 MYT1Q01538 1121 aa24.35■■□□□ 1.49
IRF3-208ENST00000594387 TERF2IPQ9NYB0 399 aa24.35■■□□□ 1.49
IRF3-208ENST00000594387 MON2Q7Z3U7 1717 aa24.35■■□□□ 1.49
IRF3-208ENST00000594387 GCP02774 474 aa24.34■■□□□ 1.49
IRF3-208ENST00000594387 CHRNA2Q15822 529 aa24.34■■□□□ 1.49
IRF3-208ENST00000594387 USP19O94966 1318 aa24.34■■□□□ 1.49
IRF3-208ENST00000594387 TTC21BQ7Z4L5 1316 aa24.34■■□□□ 1.49
IRF3-208ENST00000594387 NRKQ7Z2Y5 1582 aa24.33■■□□□ 1.49
IRF3-208ENST00000594387 BRWD3Q6RI45 1802 aa24.33■■□□□ 1.49
IRF3-208ENST00000594387 USP47Q96K76 1375 aa24.33■■□□□ 1.49
IRF3-208ENST00000594387 PIK3C2AO00443 1686 aa24.32■■□□□ 1.48
IRF3-208ENST00000594387 ZBTB7CA1YPR0 619 aa24.32■■□□□ 1.48
IRF3-208ENST00000594387 TMF1P82094 1093 aa24.32■■□□□ 1.48
IRF3-208ENST00000594387 STRN4Q9NRL3 753 aa24.32■■□□□ 1.48
IRF3-208ENST00000594387 CPSF1Q10570 1443 aaKnown RBP24.32■■□□□ 1.48
IRF3-208ENST00000594387 SSH2Q76I76 1423 aa24.3■■□□□ 1.48
IRF3-208ENST00000594387 CDCA8Q53HL2 280 aa24.3■■□□□ 1.48
IRF3-208ENST00000594387 SEPT12Q8IYM1 358 aa24.3■■□□□ 1.48
IRF3-208ENST00000594387 KCNH5Q8NCM2 988 aa24.3■■□□□ 1.48
IRF3-208ENST00000594387 TESK2Q96S53 571 aa24.3■■□□□ 1.48
IRF3-208ENST00000594387 SLC12A5Q9H2X9 1139 aa24.3■■□□□ 1.48
IRF3-208ENST00000594387 CPDO75976 1380 aa24.29■■□□□ 1.48
IRF3-208ENST00000594387 NINLQ9Y2I6 1382 aa24.29■■□□□ 1.48
IRF3-208ENST00000594387 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.28■■□□□ 1.48
IRF3-208ENST00000594387 ONECUT3O60422 494 aaPredicted RBP24.26■■□□□ 1.47
IRF3-208ENST00000594387 FAM98CQ17RN3 349 aaKnown RBP24.26■■□□□ 1.47
IRF3-208ENST00000594387 SPATA31A5Q5VU36 1347 aa24.26■■□□□ 1.47
IRF3-208ENST00000594387 SPATA31A7Q8IWB4 1347 aa24.26■■□□□ 1.47
IRF3-208ENST00000594387 SLIT3O75094 1523 aa24.25■■□□□ 1.47
IRF3-208ENST00000594387 CCDC125Q86Z20 511 aa24.24■■□□□ 1.47
IRF3-208ENST00000594387 KRT27Q7Z3Y8 459 aa24.23■■□□□ 1.47
IRF3-208ENST00000594387 LMO7Q8WWI1 1683 aa24.22■■□□□ 1.47
IRF3-208ENST00000594387 EDC4Q6P2E9 1401 aaKnown RBP24.22■■□□□ 1.47
IRF3-208ENST00000594387 SOX12O15370 315 aa24.22■■□□□ 1.47
IRF3-208ENST00000594387 USP35Q9P2H5 1018 aa24.22■■□□□ 1.47
IRF3-208ENST00000594387 CAMTA1Q9Y6Y1 1673 aa24.21■■□□□ 1.47
IRF3-208ENST00000594387 SPATA31A1Q5TZJ5 1347 aa24.21■■□□□ 1.47
IRF3-208ENST00000594387 CD163L1Q9NR16 1453 aa24.2■■□□□ 1.47
IRF3-208ENST00000594387 A0A1W2PP64 1363 aa24.2■■□□□ 1.46
IRF3-208ENST00000594387 RGPD5Q99666 1765 aa24.2■■□□□ 1.46
IRF3-208ENST00000594387 AATKQ6ZMQ8 1374 aa24.19■■□□□ 1.46
IRF3-208ENST00000594387 SF3B2Q13435 895 aaKnown RBP24.19■■□□□ 1.46
IRF3-208ENST00000594387 LARP1Q6PKG0 1096 aaKnown RBP24.17■■□□□ 1.46
IRF3-208ENST00000594387 NME9Q86XW9 330 aa24.17■■□□□ 1.46
IRF3-208ENST00000594387 USP54Q70EL1 1684 aa24.17■■□□□ 1.46
IRF3-208ENST00000594387 USP31Q70CQ4 1352 aa24.16■■□□□ 1.46
IRF3-208ENST00000594387 LTN1O94822 1766 aa24.16■■□□□ 1.46
IRF3-208ENST00000594387 EIF4G2P78344 907 aaKnown RBP eCLIP24.16■■□□□ 1.46
IRF3-208ENST00000594387 ARHGEF25Q86VW2 580 aa24.15■■□□□ 1.46
IRF3-208ENST00000594387 TCP11L2Q8N4U5 519 aa24.15■■□□□ 1.46
IRF3-208ENST00000594387 THRAP3Q9Y2W1 955 aaKnown RBP24.15■■□□□ 1.46
IRF3-208ENST00000594387 COL18A1P39060 1754 aa24.15■■□□□ 1.46
IRF3-208ENST00000594387 COL5A2P05997 1499 aaPredicted RBP24.14■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms