RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 TNNT2P45379 298 aaPredicted RBP17.79■□□□□ 0.44
VRK3-205ENST00000593919 POLR3AO14802 1390 aaPredicted RBP17.79■□□□□ 0.44
VRK3-205ENST00000593919 USP6P35125 1406 aa17.78■□□□□ 0.44
VRK3-205ENST00000593919 NCOA3Q9Y6Q9 1424 aa17.77■□□□□ 0.43
VRK3-205ENST00000593919 ZNF335Q9H4Z2 1342 aaPredicted RBP17.77■□□□□ 0.43
VRK3-205ENST00000593919 C19orf44Q9H6X5 657 aa17.76■□□□□ 0.43
VRK3-205ENST00000593919 NGDNQ8NEJ9 315 aaKnown RBP17.75■□□□□ 0.43
VRK3-205ENST00000593919 NME9Q86XW9 330 aa17.75■□□□□ 0.43
VRK3-205ENST00000593919 SSH2Q76I76 1423 aa17.74■□□□□ 0.43
VRK3-205ENST00000593919 HNRNPUQ00839 825 aaKnown RBP eCLIP17.74■□□□□ 0.43
VRK3-205ENST00000593919 DCCP43146 1447 aa17.74■□□□□ 0.43
VRK3-205ENST00000593919 TTC21BQ7Z4L5 1316 aa17.74■□□□□ 0.43
VRK3-205ENST00000593919 LRRC7Q96NW7 1537 aa17.73■□□□□ 0.43
VRK3-205ENST00000593919 MAP2P11137 1827 aaKnown RBP17.73■□□□□ 0.43
VRK3-205ENST00000593919 PHF8Q9UPP1 1060 aa17.73■□□□□ 0.43
VRK3-205ENST00000593919 DMRT2Q9Y5R5 561 aa17.73■□□□□ 0.43
VRK3-205ENST00000593919 ESCO1Q5FWF5 840 aa17.71■□□□□ 0.43
VRK3-205ENST00000593919 ZRANB1Q9UGI0 708 aa17.71■□□□□ 0.43
VRK3-205ENST00000593919 C1orf167Q5SNV9 1468 aa17.71■□□□□ 0.43
VRK3-205ENST00000593919 PIK3C2AO00443 1686 aa17.7■□□□□ 0.42
VRK3-205ENST00000593919 ATF3P18847 181 aa17.7■□□□□ 0.42
VRK3-205ENST00000593919 MTHFSP49914 203 aa17.7■□□□□ 0.42
VRK3-205ENST00000593919 MST1RQ04912 1400 aa17.69■□□□□ 0.42
VRK3-205ENST00000593919 KIF1AQ12756 1690 aa17.69■□□□□ 0.42
VRK3-205ENST00000593919 SHPRHQ149N8 1683 aa17.69■□□□□ 0.42
VRK3-205ENST00000593919 MSH6P52701 1360 aa17.69■□□□□ 0.42
VRK3-205ENST00000593919 COG3Q96JB2 828 aa17.69■□□□□ 0.42
VRK3-205ENST00000593919 ORAI2Q96SN7 254 aa17.69■□□□□ 0.42
VRK3-205ENST00000593919 TTC21AQ8NDW8 1320 aa17.69■□□□□ 0.42
VRK3-205ENST00000593919 OVOS2A0A0J9YW53 1432 aa17.68■□□□□ 0.42
VRK3-205ENST00000593919 OVOS2Q6IE36 1432 aa17.68■□□□□ 0.42
VRK3-205ENST00000593919 CADPS2Q86UW7 1296 aa17.66■□□□□ 0.42
VRK3-205ENST00000593919 FBLN1P23142 703 aa17.66■□□□□ 0.42
VRK3-205ENST00000593919 WDR43Q15061 677 aaKnown RBP eCLIP17.66■□□□□ 0.42
VRK3-205ENST00000593919 MARF1Q9Y4F3 1742 aaKnown RBP17.65■□□□□ 0.42
VRK3-205ENST00000593919 FKBP8Q14318 412 aa17.65■□□□□ 0.42
VRK3-205ENST00000593919 USP54Q70EL1 1684 aa17.65■□□□□ 0.42
VRK3-205ENST00000593919 ADAMTS8Q9UP79 889 aa17.64■□□□□ 0.41
VRK3-205ENST00000593919 BLMP54132 1417 aaPredicted RBP17.64■□□□□ 0.41
VRK3-205ENST00000593919 CFAP53Q96M91 514 aa17.64■□□□□ 0.41
VRK3-205ENST00000593919 INSRP06213 1382 aa17.64■□□□□ 0.41
VRK3-205ENST00000593919 AATKQ6ZMQ8 1374 aa17.64■□□□□ 0.41
VRK3-205ENST00000593919 FOXO3O43524 673 aa17.63■□□□□ 0.41
VRK3-205ENST00000593919 COL3A1P02461 1466 aaPredicted RBP17.63■□□□□ 0.41
VRK3-205ENST00000593919 NEFLP07196 543 aa17.62■□□□□ 0.41
VRK3-205ENST00000593919 PSME1Q06323 249 aa17.62■□□□□ 0.41
VRK3-205ENST00000593919 POLKQ9UBT6 870 aa17.62■□□□□ 0.41
VRK3-205ENST00000593919 USP31Q70CQ4 1352 aa17.62■□□□□ 0.41
VRK3-205ENST00000593919 TRPM3Q9HCF6 1732 aaPredicted RBP17.62■□□□□ 0.41
VRK3-205ENST00000593919 PAK3O75914 559 aaPredicted RBP17.62■□□□□ 0.41
VRK3-205ENST00000593919 ZBED9Q6R2W3 1325 aa17.62■□□□□ 0.41
VRK3-205ENST00000593919 SMG6Q86US8 1419 aaKnown RBP17.62■□□□□ 0.41
VRK3-205ENST00000593919 PNPLA6Q8IY17 1366 aa17.6■□□□□ 0.41
VRK3-205ENST00000593919 SENP3-EIF4A1A0A087X0R7 540 aa17.6■□□□□ 0.41
VRK3-205ENST00000593919 MYT1Q01538 1121 aa17.6■□□□□ 0.41
VRK3-205ENST00000593919 ABTB2Q8N961 1025 aa17.6■□□□□ 0.41
VRK3-205ENST00000593919 EMILIN1Q9Y6C2 1016 aa17.6■□□□□ 0.41
VRK3-205ENST00000593919 XPCQ01831 940 aaPredicted RBP17.59■□□□□ 0.41
VRK3-205ENST00000593919 RRS1Q15050 365 aaKnown RBP17.59■□□□□ 0.41
VRK3-205ENST00000593919 CDK12Q9NYV4 1490 aaPredicted RBP17.59■□□□□ 0.41
VRK3-205ENST00000593919 PPM1GO15355 546 aaPredicted RBP17.59■□□□□ 0.41
VRK3-205ENST00000593919 NLRP6P59044 892 aa17.59■□□□□ 0.41
VRK3-205ENST00000593919 NUTM2GQ5VZR2 741 aa17.59■□□□□ 0.41
VRK3-205ENST00000593919 LTBP4Q8N2S1 1624 aa17.58■□□□□ 0.4
VRK3-205ENST00000593919 PEAK1Q9H792 1746 aa17.57■□□□□ 0.4
VRK3-205ENST00000593919 SOX12O15370 315 aa17.56■□□□□ 0.4
VRK3-205ENST00000593919 ALS2Q96Q42 1657 aa17.56■□□□□ 0.4
VRK3-205ENST00000593919 KRT28Q7Z3Y7 464 aa17.55■□□□□ 0.4
VRK3-205ENST00000593919 DDX17Q92841 729 aaKnown RBP17.55■□□□□ 0.4
VRK3-205ENST00000593919 BRINP3Q76B58 766 aa17.54■□□□□ 0.4
VRK3-205ENST00000593919 CCDC146Q8IYE0 955 aa17.54■□□□□ 0.4
VRK3-205ENST00000593919 SLAIN2Q9P270 581 aa17.54■□□□□ 0.4
VRK3-205ENST00000593919 DIAPH1O60610 1272 aaKnown RBP17.53■□□□□ 0.4
VRK3-205ENST00000593919 LTN1O94822 1766 aa17.53■□□□□ 0.4
VRK3-205ENST00000593919 NPHP3Q7Z494 1330 aa17.53■□□□□ 0.4
VRK3-205ENST00000593919 NUDCQ9Y266 331 aa17.53■□□□□ 0.4
VRK3-205ENST00000593919 U2AF1L5P0DN76 240 aaPredicted RBP17.52■□□□□ 0.4
VRK3-205ENST00000593919 U2AF1Q01081 240 aaKnown RBP eCLIP17.52■□□□□ 0.4
VRK3-205ENST00000593919 PXDNQ92626 1479 aa17.52■□□□□ 0.39
VRK3-205ENST00000593919 U2SURPO15042 1029 aaKnown RBP17.51■□□□□ 0.39
VRK3-205ENST00000593919 SALL2Q9Y467 1007 aaPredicted RBP17.51■□□□□ 0.39
VRK3-205ENST00000593919 MAP3K19Q56UN5 1328 aa17.51■□□□□ 0.39
VRK3-205ENST00000593919 NFAT5O94916 1531 aa17.51■□□□□ 0.39
VRK3-205ENST00000593919 LMOD2Q6P5Q4 547 aa17.5■□□□□ 0.39
VRK3-205ENST00000593919 SBNO1A3KN83 1393 aa17.49■□□□□ 0.39
VRK3-205ENST00000593919 SLIT3O75094 1523 aa17.49■□□□□ 0.39
VRK3-205ENST00000593919 IL13P35225 146 aa17.48■□□□□ 0.39
VRK3-205ENST00000593919 FLT4P35916 1363 aa17.48■□□□□ 0.39
VRK3-205ENST00000593919 APAF1O14727 1248 aa17.48■□□□□ 0.39
VRK3-205ENST00000593919 NHSL1Q5SYE7 1610 aa17.48■□□□□ 0.39
VRK3-205ENST00000593919 TNS3Q68CZ2 1445 aa17.47■□□□□ 0.39
VRK3-205ENST00000593919 IQSEC2Q5JU85 1478 aa17.47■□□□□ 0.39
VRK3-205ENST00000593919 HSP90AB2PQ58FF8 381 aa17.47■□□□□ 0.39
VRK3-205ENST00000593919 RUNDC1Q96C34 613 aa17.47■□□□□ 0.39
VRK3-205ENST00000593919 USP19O94966 1318 aa17.47■□□□□ 0.39
VRK3-205ENST00000593919 KCNH5Q8NCM2 988 aa17.46■□□□□ 0.39
VRK3-205ENST00000593919 MED1Q15648 1581 aaPredicted RBP17.46■□□□□ 0.38
VRK3-205ENST00000593919 PHRF1Q9P1Y6 1649 aaKnown RBP17.45■□□□□ 0.38
VRK3-205ENST00000593919 RGPD1P0DJD0 1748 aa17.45■□□□□ 0.38
VRK3-205ENST00000593919 AMPHP49418 695 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms