RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 RAD21O60216 631 aa10.03□□□□□ -0.8
SMAD4-216ENST00000593223 TRIM32Q13049 653 aa10.03□□□□□ -0.8
SMAD4-216ENST00000593223 LINC01559Q495D7 138 aa10.03□□□□□ -0.8
SMAD4-216ENST00000593223 FKBPLQ9UIM3 349 aa10.03□□□□□ -0.8
SMAD4-216ENST00000593223 NBPF14Q5TI25 921 aa10.02□□□□□ -0.81
SMAD4-216ENST00000593223 BAP1Q92560 729 aa10.02□□□□□ -0.81
SMAD4-216ENST00000593223 TBC1D2BQ9UPU7 963 aa10.01□□□□□ -0.81
SMAD4-216ENST00000593223 AGERQ15109 404 aa10□□□□□ -0.81
SMAD4-216ENST00000593223 GDPD2Q9HCC8 539 aa10□□□□□ -0.81
SMAD4-216ENST00000593223 ABL2P42684 1182 aa9.99□□□□□ -0.81
SMAD4-216ENST00000593223 EMID1Q96A84 441 aaPredicted RBP9.99□□□□□ -0.81
SMAD4-216ENST00000593223 V9GY48 417 aaPredicted RBP9.99□□□□□ -0.81
SMAD4-216ENST00000593223 SPRYD7Q5W111 196 aa9.98□□□□□ -0.81
SMAD4-216ENST00000593223 C14orf37Q86TY3 774 aa9.98□□□□□ -0.81
SMAD4-216ENST00000593223 ZNF511Q8NB15 262 aa9.98□□□□□ -0.81
SMAD4-216ENST00000593223 GPKOWQ92917 476 aaPredicted RBP eCLIP9.98□□□□□ -0.81
SMAD4-216ENST00000593223 ZC3H4Q9UPT8 1303 aaKnown RBP9.98□□□□□ -0.81
SMAD4-216ENST00000593223 POM121Q96HA1 1249 aa9.97□□□□□ -0.81
SMAD4-216ENST00000593223 COG6Q9Y2V7 657 aa9.97□□□□□ -0.81
SMAD4-216ENST00000593223 WNT7BP56706 349 aa9.96□□□□□ -0.82
SMAD4-216ENST00000593223 SH3BP2P78314 561 aa9.96□□□□□ -0.82
SMAD4-216ENST00000593223 ZNF697Q5TEC3 545 aa9.96□□□□□ -0.82
SMAD4-216ENST00000593223 WWC1Q8IX03 1113 aa9.96□□□□□ -0.82
SMAD4-216ENST00000593223 CLUAP1Q96AJ1 413 aa9.96□□□□□ -0.82
SMAD4-216ENST00000593223 PTK2Q05397 1052 aa9.95□□□□□ -0.82
SMAD4-216ENST00000593223 PDXDC2PQ6P474 469 aa9.95□□□□□ -0.82
SMAD4-216ENST00000593223 ZNF598Q86UK7 904 aaKnown RBP9.95□□□□□ -0.82
SMAD4-216ENST00000593223 BPHLQ86WA6 291 aaPredicted RBP9.95□□□□□ -0.82
SMAD4-216ENST00000593223 FOXJ1Q92949 421 aa9.95□□□□□ -0.82
SMAD4-216ENST00000593223 MAGEB6P1A0A0J9YX57 407 aa9.94□□□□□ -0.82
SMAD4-216ENST00000593223 SKOR1P84550 965 aa9.94□□□□□ -0.82
SMAD4-216ENST00000593223 FOXC1Q12948 553 aa9.94□□□□□ -0.82
SMAD4-216ENST00000593223 ARHGAP9Q9BRR9 750 aa9.94□□□□□ -0.82
SMAD4-216ENST00000593223 Q6ZNB5 142 aa9.93□□□□□ -0.82
SMAD4-216ENST00000593223 ZBTB33Q86T24 672 aa9.93□□□□□ -0.82
SMAD4-216ENST00000593223 EHBP1Q8NDI1 1231 aa9.93□□□□□ -0.82
SMAD4-216ENST00000593223 CARD14Q9BXL6 1004 aa9.93□□□□□ -0.82
SMAD4-216ENST00000593223 RC3H1Q5TC82 1133 aaKnown RBP9.92□□□□□ -0.82
SMAD4-216ENST00000593223 ERICH6Q7L0X2 663 aa9.92□□□□□ -0.82
SMAD4-216ENST00000593223 ZBBXA8MT70 800 aa9.91□□□□□ -0.82
SMAD4-216ENST00000593223 GPSM3Q9Y4H4 160 aa9.91□□□□□ -0.82
SMAD4-216ENST00000593223 SH3BP5LQ7L8J4 393 aa9.9□□□□□ -0.82
SMAD4-216ENST00000593223 WNT7AO00755 349 aa9.89□□□□□ -0.83
SMAD4-216ENST00000593223 LCE2BO14633 110 aa9.89□□□□□ -0.83
SMAD4-216ENST00000593223 GPR37L1O60883 481 aa9.89□□□□□ -0.83
SMAD4-216ENST00000593223 VARSP26640 1264 aaKnown RBP9.89□□□□□ -0.83
SMAD4-216ENST00000593223 IRF5Q13568 498 aa9.89□□□□□ -0.83
SMAD4-216ENST00000593223 PROSER2Q86WR7 435 aaPredicted RBP9.89□□□□□ -0.83
SMAD4-216ENST00000593223 FBXO45P0C2W1 286 aa9.88□□□□□ -0.83
SMAD4-216ENST00000593223 NR1H3Q13133 447 aa9.88□□□□□ -0.83
SMAD4-216ENST00000593223 WASHC4Q2M389 1173 aa9.88□□□□□ -0.83
SMAD4-216ENST00000593223 FAM174AQ8TBP5 190 aa9.88□□□□□ -0.83
SMAD4-216ENST00000593223 MRGPRX2Q96LB1 330 aa9.88□□□□□ -0.83
SMAD4-216ENST00000593223 ZMYND15Q9H091 742 aa9.88□□□□□ -0.83
SMAD4-216ENST00000593223 ZNF330Q9Y3S2 320 aaPredicted RBP9.88□□□□□ -0.83
SMAD4-216ENST00000593223 A6NJR5 290 aa9.87□□□□□ -0.83
SMAD4-216ENST00000593223 VAC14Q08AM6 782 aa9.87□□□□□ -0.83
SMAD4-216ENST00000593223 C4orf48Q5BLP8 95 aa9.87□□□□□ -0.83
SMAD4-216ENST00000593223 SH3RF1Q7Z6J0 888 aa9.87□□□□□ -0.83
SMAD4-216ENST00000593223 ADAM32Q8TC27 787 aa9.87□□□□□ -0.83
SMAD4-216ENST00000593223 TNFRSF10AO00220 468 aa9.86□□□□□ -0.83
SMAD4-216ENST00000593223 ARID5BQ14865 1188 aa9.86□□□□□ -0.83
SMAD4-216ENST00000593223 ERFEQ4G0M1 354 aa9.85□□□□□ -0.83
SMAD4-216ENST00000593223 DZIP3Q86Y13 1208 aaKnown RBP9.85□□□□□ -0.83
SMAD4-216ENST00000593223 SLC10A4Q96EP9 437 aa9.85□□□□□ -0.83
SMAD4-216ENST00000593223 OCSTAMPQ9BR26 566 aa9.85□□□□□ -0.83
SMAD4-216ENST00000593223 PKD2L1Q9P0L9 805 aa9.85□□□□□ -0.83
SMAD4-216ENST00000593223 PCDHB9Q9Y5E1 797 aa9.85□□□□□ -0.83
SMAD4-216ENST00000593223 EIF4G2P78344 907 aaKnown RBP eCLIP9.84□□□□□ -0.83
SMAD4-216ENST00000593223 CYP4X1Q8N118 509 aa9.84□□□□□ -0.83
SMAD4-216ENST00000593223 TTC24A2A3L6 582 aaPredicted RBP9.83□□□□□ -0.84
SMAD4-216ENST00000593223 GDF9O60383 454 aa9.83□□□□□ -0.84
SMAD4-216ENST00000593223 TIMELESSQ9UNS1 1208 aa9.83□□□□□ -0.84
SMAD4-216ENST00000593223 PDZRN3Q9UPQ7 1066 aa9.83□□□□□ -0.84
SMAD4-216ENST00000593223 ZNF592Q92610 1267 aa9.82□□□□□ -0.84
SMAD4-216ENST00000593223 C1QTNF2Q9BXJ5 285 aa9.82□□□□□ -0.84
SMAD4-216ENST00000593223 TLL2Q9Y6L7 1015 aa9.82□□□□□ -0.84
SMAD4-216ENST00000593223 ALDH1A1P00352 501 aa9.81□□□□□ -0.84
SMAD4-216ENST00000593223 VASH1Q7L8A9 365 aaPredicted RBP9.81□□□□□ -0.84
SMAD4-216ENST00000593223 SNIP1Q8TAD8 396 aaKnown RBP9.81□□□□□ -0.84
SMAD4-216ENST00000593223 SIAH2O43255 324 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 TRAK2O60296 914 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 PRR20EP86478 221 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 PRR20CP86479 221 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 PRR20DP86480 221 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 PRR20BP86481 221 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 PRR20AP86496 221 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 SEMA3FQ13275 785 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 TRIM67Q6ZTA4 783 aa9.8□□□□□ -0.84
SMAD4-216ENST00000593223 TRMT44Q8IYL2 757 aaKnown RBP9.8□□□□□ -0.84
SMAD4-216ENST00000593223 FNBP4Q8N3X1 1017 aaPredicted RBP9.8□□□□□ -0.84
SMAD4-216ENST00000593223 MCCD1P59942 119 aaPredicted RBP9.79□□□□□ -0.84
SMAD4-216ENST00000593223 CDV3Q9UKY7 258 aaKnown RBP9.79□□□□□ -0.84
SMAD4-216ENST00000593223 WASF2Q9Y6W5 498 aa9.79□□□□□ -0.84
SMAD4-216ENST00000593223 POM121CA8CG34 1229 aa9.78□□□□□ -0.84
SMAD4-216ENST00000593223 GFRA3O60609 400 aa9.78□□□□□ -0.84
SMAD4-216ENST00000593223 SOX11P35716 441 aa9.78□□□□□ -0.84
SMAD4-216ENST00000593223 NBPF20Q3BBV1 942 aa9.78□□□□□ -0.84
SMAD4-216ENST00000593223 ZNF777Q9ULD5 760 aaPredicted RBP9.77□□□□□ -0.85
SMAD4-216ENST00000593223 CDK15Q96Q40 435 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms