RNA–Protein interactions for RNA: ENST00000589064.5

MBD3-205, Transcript of methyl-CpG binding domain protein 3, humanhuman

TSL 2

Gene MBD3, Length 1,475 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3-205ENST00000589064 GJD4Q96KN9 370 aaPredicted RBP29.49■■■□□ 2.31
MBD3-205ENST00000589064 RGS12O14924 1447 aa29.49■■■□□ 2.31
MBD3-205ENST00000589064 SLIT2O94813 1529 aa29.49■■■□□ 2.31
MBD3-205ENST00000589064 TRPM3Q9HCF6 1732 aaPredicted RBP29.49■■■□□ 2.31
MBD3-205ENST00000589064 QRICH2Q9H0J4 1663 aa29.45■■■□□ 2.31
MBD3-205ENST00000589064 UPF1Q92900 1129 aaKnown RBP eCLIP29.45■■■□□ 2.319e-11■■■■■ 38.8
MBD3-205ENST00000589064 ITSN1Q15811 1721 aa29.44■■■□□ 2.3
MBD3-205ENST00000589064 ABTB2Q8N961 1025 aa29.43■■■□□ 2.3
MBD3-205ENST00000589064 ALS2Q96Q42 1657 aa29.42■■■□□ 2.3
MBD3-205ENST00000589064 RALGAPBQ86X10 1494 aa29.42■■■□□ 2.3
MBD3-205ENST00000589064 MARF1Q9Y4F3 1742 aaKnown RBP29.42■■■□□ 2.3
MBD3-205ENST00000589064 TOPAZ1Q8N9V7 1692 aa29.41■■■□□ 2.3
MBD3-205ENST00000589064 VPS72Q15906 364 aa29.4■■■□□ 2.3
MBD3-205ENST00000589064 BTG4Q9NY30 223 aa29.4■■■□□ 2.3
MBD3-205ENST00000589064 CCDC9Q9Y3X0 531 aaKnown RBP29.4■■■□□ 2.3
MBD3-205ENST00000589064 ZC3H6P61129 1189 aaKnown RBP29.37■■■□□ 2.29
MBD3-205ENST00000589064 PRDM11Q9NQV5 511 aa29.37■■■□□ 2.29
MBD3-205ENST00000589064 NLRP13Q86W25 1043 aa29.36■■■□□ 2.29
MBD3-205ENST00000589064 ABCA3Q99758 1704 aa29.34■■■□□ 2.29
MBD3-205ENST00000589064 CHRNA2Q15822 529 aa29.34■■■□□ 2.29
MBD3-205ENST00000589064 SBNO2Q9Y2G9 1366 aa29.34■■■□□ 2.29
MBD3-205ENST00000589064 ZNF692Q9BU19 519 aaPredicted RBP29.33■■■□□ 2.29
MBD3-205ENST00000589064 BRD4O60885 1362 aaPredicted RBP29.33■■■□□ 2.29
MBD3-205ENST00000589064 KIAA0232Q92628 1395 aa29.33■■■□□ 2.29
MBD3-205ENST00000589064 USP6P35125 1406 aa29.33■■■□□ 2.29
MBD3-205ENST00000589064 ATAD2Q6PL18 1390 aa29.32■■■□□ 2.28
MBD3-205ENST00000589064 ST20-MTHFSA0A0A6YYL1 179 aa29.3■■■□□ 2.28
MBD3-205ENST00000589064 NLRP6P59044 892 aa29.3■■■□□ 2.28
MBD3-205ENST00000589064 CLSPNQ9HAW4 1339 aa29.3■■■□□ 2.28
MBD3-205ENST00000589064 USP19O94966 1318 aa29.29■■■□□ 2.28
MBD3-205ENST00000589064 GCP02774 474 aa29.29■■■□□ 2.28
MBD3-205ENST00000589064 SEPT12Q8IYM1 358 aa29.29■■■□□ 2.28
MBD3-205ENST00000589064 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.28■■■□□ 2.28
MBD3-205ENST00000589064 GLI3P10071 1580 aa29.28■■■□□ 2.28
MBD3-205ENST00000589064 TIMELESSQ9UNS1 1208 aa29.28■■■□□ 2.28
MBD3-205ENST00000589064 ONECUT3O60422 494 aaPredicted RBP29.27■■■□□ 2.28
MBD3-205ENST00000589064 SSH2Q76I76 1423 aa29.27■■■□□ 2.28
MBD3-205ENST00000589064 TTC21BQ7Z4L5 1316 aa29.26■■■□□ 2.27
MBD3-205ENST00000589064 TMC1Q8TDI8 760 aa29.26■■■□□ 2.27
MBD3-205ENST00000589064 PLCH1Q4KWH8 1693 aa29.25■■■□□ 2.27
MBD3-205ENST00000589064 TESK2Q96S53 571 aa29.25■■■□□ 2.27
MBD3-205ENST00000589064 STRN4Q9NRL3 753 aa29.24■■■□□ 2.27
MBD3-205ENST00000589064 CRYBG1Q9Y4K1 1723 aa29.24■■■□□ 2.27
MBD3-205ENST00000589064 SLC12A5Q9H2X9 1139 aa29.23■■■□□ 2.27
MBD3-205ENST00000589064 COL14A1Q05707 1796 aaKnown RBP29.23■■■□□ 2.27
MBD3-205ENST00000589064 NWD2Q9ULI1 1742 aa29.23■■■□□ 2.27
MBD3-205ENST00000589064 CPSF1Q10570 1443 aaKnown RBP29.23■■■□□ 2.27
MBD3-205ENST00000589064 FAM98CQ17RN3 349 aaKnown RBP29.23■■■□□ 2.27
MBD3-205ENST00000589064 CCER1Q8TC90 406 aaPredicted RBP29.23■■■□□ 2.27
MBD3-205ENST00000589064 SPATA31A5Q5VU36 1347 aa29.22■■■□□ 2.27
MBD3-205ENST00000589064 SPATA31A7Q8IWB4 1347 aa29.22■■■□□ 2.27
MBD3-205ENST00000589064 KTN1Q86UP2 1357 aaKnown RBP29.22■■■□□ 2.27
MBD3-205ENST00000589064 A0A0G2JS52 829 aa29.21■■■□□ 2.27
MBD3-205ENST00000589064 EVA1CP58658 441 aa29.21■■■□□ 2.27
MBD3-205ENST00000589064 MYT1Q01538 1121 aa29.21■■■□□ 2.27
MBD3-205ENST00000589064 PUS7Q96PZ0 661 aaKnown RBP29.21■■■□□ 2.27
MBD3-205ENST00000589064 CPDO75976 1380 aa29.19■■■□□ 2.26
MBD3-205ENST00000589064 ZBTB7CA1YPR0 619 aa29.19■■■□□ 2.26
MBD3-205ENST00000589064 TTC21AQ8NDW8 1320 aa29.18■■■□□ 2.26
MBD3-205ENST00000589064 PHRF1Q9P1Y6 1649 aaKnown RBP29.18■■■□□ 2.26
MBD3-205ENST00000589064 SLC24A1O60721 1099 aa29.17■■■□□ 2.26
MBD3-205ENST00000589064 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.17■■■□□ 2.26
MBD3-205ENST00000589064 HDGFL2Q7Z4V5 671 aaPredicted RBP29.17■■■□□ 2.26
MBD3-205ENST00000589064 KRT27Q7Z3Y8 459 aa29.16■■■□□ 2.26
MBD3-205ENST00000589064 USP47Q96K76 1375 aa29.15■■■□□ 2.26
MBD3-205ENST00000589064 SPATA31A1Q5TZJ5 1347 aa29.15■■■□□ 2.26
MBD3-205ENST00000589064 NRKQ7Z2Y5 1582 aa29.14■■■□□ 2.26
MBD3-205ENST00000589064 NRAPQ86VF7 1730 aa29.14■■■□□ 2.26
MBD3-205ENST00000589064 SOX12O15370 315 aa29.13■■■□□ 2.25
MBD3-205ENST00000589064 TERF2IPQ9NYB0 399 aa29.13■■■□□ 2.25
MBD3-205ENST00000589064 ZRANB1Q9UGI0 708 aa29.13■■■□□ 2.25
MBD3-205ENST00000589064 LARP1Q6PKG0 1096 aaKnown RBP29.12■■■□□ 2.25
MBD3-205ENST00000589064 USP35Q9P2H5 1018 aa29.12■■■□□ 2.25
MBD3-205ENST00000589064 CD163L1Q9NR16 1453 aa29.12■■■□□ 2.25
MBD3-205ENST00000589064 CAMTA1Q9Y6Y1 1673 aa29.11■■■□□ 2.25
MBD3-205ENST00000589064 NME9Q86XW9 330 aa29.1■■■□□ 2.25
MBD3-205ENST00000589064 KCNH5Q8NCM2 988 aa29.1■■■□□ 2.25
MBD3-205ENST00000589064 TMF1P82094 1093 aa29.1■■■□□ 2.25
MBD3-205ENST00000589064 CCDC125Q86Z20 511 aa29.1■■■□□ 2.25
MBD3-205ENST00000589064 SLIT3O75094 1523 aa29.08■■■□□ 2.25
MBD3-205ENST00000589064 AATKQ6ZMQ8 1374 aa29.07■■■□□ 2.24
MBD3-205ENST00000589064 ARHGEF25Q86VW2 580 aa29.07■■■□□ 2.24
MBD3-205ENST00000589064 PIK3C2AO00443 1686 aa29.07■■■□□ 2.24
MBD3-205ENST00000589064 A0A1W2PP64 1363 aa29.06■■■□□ 2.24
MBD3-205ENST00000589064 AXIN2Q9Y2T1 843 aa29.05■■■□□ 2.24
MBD3-205ENST00000589064 AKAP12Q02952 1782 aa29.05■■■□□ 2.24
MBD3-205ENST00000589064 FAM182BQ5T319 152 aa29.04■■■□□ 2.24
MBD3-205ENST00000589064 TCP11L2Q8N4U5 519 aa29.04■■■□□ 2.24
MBD3-205ENST00000589064 USP31Q70CQ4 1352 aa29.03■■■□□ 2.24
MBD3-205ENST00000589064 BARGINQ6ZT62 677 aa29.03■■■□□ 2.24
MBD3-205ENST00000589064 EDC4Q6P2E9 1401 aaKnown RBP29.02■■■□□ 2.24
MBD3-205ENST00000589064 NINLQ9Y2I6 1382 aa29.02■■■□□ 2.24
MBD3-205ENST00000589064 LMO7Q8WWI1 1683 aa29■■■□□ 2.23
MBD3-205ENST00000589064 COL5A2P05997 1499 aaPredicted RBP29■■■□□ 2.23
MBD3-205ENST00000589064 BRWD3Q6RI45 1802 aa28.99■■■□□ 2.23
MBD3-205ENST00000589064 BLMP54132 1417 aaPredicted RBP28.99■■■□□ 2.23
MBD3-205ENST00000589064 CDCA8Q53HL2 280 aa28.98■■■□□ 2.23
MBD3-205ENST00000589064 THRAP3Q9Y2W1 955 aaKnown RBP28.98■■■□□ 2.23
MBD3-205ENST00000589064 SF3B2Q13435 895 aaKnown RBP28.97■■■□□ 2.23
MBD3-205ENST00000589064 TOM1L2Q6ZVM7 507 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms