RNA–Protein interactions for RNA: ENST00000587220.5

ZNF540-205, Transcript of zinc finger protein 540, humanhuman

TSL 2

Gene ZNF540, Length 576 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-205ENST00000587220 CCDC61Q9Y6R9 512 aa15.3■□□□□ 0.04
ZNF540-205ENST00000587220 TOPAZ1Q8N9V7 1692 aa15.29■□□□□ 0.04
ZNF540-205ENST00000587220 GLI3P10071 1580 aa15.29■□□□□ 0.04
ZNF540-205ENST00000587220 FAM83GA6ND36 823 aa15.29■□□□□ 0.04
ZNF540-205ENST00000587220 VPS72Q15906 364 aa15.29■□□□□ 0.04
ZNF540-205ENST00000587220 COL14A1Q05707 1796 aaKnown RBP15.28■□□□□ 0.04
ZNF540-205ENST00000587220 ACEP12821 1306 aa15.27■□□□□ 0.04
ZNF540-205ENST00000587220 A0A0G2JS52 829 aa15.27■□□□□ 0.04
ZNF540-205ENST00000587220 MYT1Q01538 1121 aa15.27■□□□□ 0.04
ZNF540-205ENST00000587220 BTG4Q9NY30 223 aa15.27■□□□□ 0.04
ZNF540-205ENST00000587220 TRPM1Q7Z4N2 1603 aa15.27■□□□□ 0.03
ZNF540-205ENST00000587220 ROCK2O75116 1388 aaKnown RBP15.26■□□□□ 0.03
ZNF540-205ENST00000587220 NBPF8Q3BBV2 869 aa15.26■□□□□ 0.03
ZNF540-205ENST00000587220 PRDM11Q9NQV5 511 aa15.26■□□□□ 0.03
ZNF540-205ENST00000587220 PPIP5K1Q6PFW1 1433 aa15.26■□□□□ 0.03
ZNF540-205ENST00000587220 POLR3AO14802 1390 aaPredicted RBP15.25■□□□□ 0.03
ZNF540-205ENST00000587220 CABP2Q9NPB3 220 aa15.25■□□□□ 0.03
ZNF540-205ENST00000587220 CRYBG1Q9Y4K1 1723 aa15.25■□□□□ 0.03
ZNF540-205ENST00000587220 NRAPQ86VF7 1730 aa15.24■□□□□ 0.03
ZNF540-205ENST00000587220 PLEKHG3A1L390 1219 aa15.24■□□□□ 0.03
ZNF540-205ENST00000587220 NUTM2GQ5VZR2 741 aa15.24■□□□□ 0.03
ZNF540-205ENST00000587220 CCDC125Q86Z20 511 aa15.24■□□□□ 0.03
ZNF540-205ENST00000587220 SEPT12Q8IYM1 358 aa15.24■□□□□ 0.03
ZNF540-205ENST00000587220 ABTB2Q8N961 1025 aa15.24■□□□□ 0.03
ZNF540-205ENST00000587220 BRWD3Q6RI45 1802 aa15.23■□□□□ 0.03
ZNF540-205ENST00000587220 PHRF1Q9P1Y6 1649 aaKnown RBP15.23■□□□□ 0.03
ZNF540-205ENST00000587220 EVC2Q86UK5 1308 aa15.22■□□□□ 0.03
ZNF540-205ENST00000587220 KIAA0232Q92628 1395 aa15.22■□□□□ 0.03
ZNF540-205ENST00000587220 TONSLQ96HA7 1378 aa15.21■□□□□ 0.02
ZNF540-205ENST00000587220 ZC3H6P61129 1189 aaKnown RBP15.2■□□□□ 0.02
ZNF540-205ENST00000587220 CHRNA2Q15822 529 aa15.2■□□□□ 0.02
ZNF540-205ENST00000587220 FAM98CQ17RN3 349 aaKnown RBP15.2■□□□□ 0.02
ZNF540-205ENST00000587220 KRT27Q7Z3Y8 459 aa15.2■□□□□ 0.02
ZNF540-205ENST00000587220 ONECUT3O60422 494 aaPredicted RBP15.19■□□□□ 0.02
ZNF540-205ENST00000587220 SF3B2Q13435 895 aaKnown RBP15.19■□□□□ 0.02
ZNF540-205ENST00000587220 STRN4Q9NRL3 753 aa15.19■□□□□ 0.02
ZNF540-205ENST00000587220 CABP1Q9NZU7 370 aa15.19■□□□□ 0.02
ZNF540-205ENST00000587220 BLMP54132 1417 aaPredicted RBP15.18■□□□□ 0.02
ZNF540-205ENST00000587220 TRIM26Q12899 539 aaPredicted RBP15.18■□□□□ 0.02
ZNF540-205ENST00000587220 NLRP13Q86W25 1043 aa15.18■□□□□ 0.02
ZNF540-205ENST00000587220 NRKQ7Z2Y5 1582 aa15.18■□□□□ 0.02
ZNF540-205ENST00000587220 SPATA31A5Q5VU36 1347 aa15.17■□□□□ 0.02
ZNF540-205ENST00000587220 SPATA31A7Q8IWB4 1347 aa15.17■□□□□ 0.02
ZNF540-205ENST00000587220 BRD4O60885 1362 aaPredicted RBP15.17■□□□□ 0.02
ZNF540-205ENST00000587220 EVA1CP58658 441 aa15.17■□□□□ 0.02
ZNF540-205ENST00000587220 CARD11Q9BXL7 1154 aa15.16■□□□□ 0.02
ZNF540-205ENST00000587220 ZRANB1Q9UGI0 708 aa15.16■□□□□ 0.02
ZNF540-205ENST00000587220 USP6P35125 1406 aa15.16■□□□□ 0.02
ZNF540-205ENST00000587220 USP19O94966 1318 aa15.15■□□□□ 0.02
ZNF540-205ENST00000587220 ZBTB7CA1YPR0 619 aa15.14■□□□□ 0.01
ZNF540-205ENST00000587220 NLRP6P59044 892 aa15.14■□□□□ 0.01
ZNF540-205ENST00000587220 USP35Q9P2H5 1018 aa15.14■□□□□ 0.01
ZNF540-205ENST00000587220 CPDO75976 1380 aa15.13■□□□□ 0.01
ZNF540-205ENST00000587220 GCP02774 474 aa15.13■□□□□ 0.01
ZNF540-205ENST00000587220 SPATA31A1Q5TZJ5 1347 aa15.13■□□□□ 0.01
ZNF540-205ENST00000587220 ZNF692Q9BU19 519 aaPredicted RBP15.12■□□□□ 0.01
ZNF540-205ENST00000587220 SSH2Q76I76 1423 aa15.11■□□□□ 0.01
ZNF540-205ENST00000587220 DEFB132Q7Z7B7 95 aa15.11■□□□□ 0.01
ZNF540-205ENST00000587220 THSD7AQ9UPZ6 1657 aa15.11■□□□□ 0.01
ZNF540-205ENST00000587220 PIK3C2AO00443 1686 aa15.1■□□□□ 0.01
ZNF540-205ENST00000587220 CAMTA1Q9Y6Y1 1673 aa15.1■□□□□ 0.01
ZNF540-205ENST00000587220 AKAP12Q02952 1782 aa15.1■□□□□ 0.01
ZNF540-205ENST00000587220 SBNO2Q9Y2G9 1366 aa15.1■□□□□ 0.01
ZNF540-205ENST00000587220 LMO7Q8WWI1 1683 aa15.09■□□□□ 0.01
ZNF540-205ENST00000587220 SRCAPQ6ZRS2 3230 aa15.09■□□□□ 0.01
ZNF540-205ENST00000587220 BAG6P46379 1132 aa15.09■□□□□ 0.01
ZNF540-205ENST00000587220 FAM182BQ5T319 152 aa15.09■□□□□ 0.01
ZNF540-205ENST00000587220 LARP1Q6PKG0 1096 aaKnown RBP15.09■□□□□ 0.01
ZNF540-205ENST00000587220 KTN1Q86UP2 1357 aaKnown RBP15.09■□□□□ 0.01
ZNF540-205ENST00000587220 RGPD1P0DJD0 1748 aa15.08■□□□□ 0
ZNF540-205ENST00000587220 SLIT3O75094 1523 aa15.07■□□□□ 0
ZNF540-205ENST00000587220 TCP11L2Q8N4U5 519 aa15.07■□□□□ 0
ZNF540-205ENST00000587220 TMC1Q8TDI8 760 aa15.07■□□□□ 0
ZNF540-205ENST00000587220 TTC21BQ7Z4L5 1316 aa15.07■□□□□ 0
ZNF540-205ENST00000587220 TTC21AQ8NDW8 1320 aa15.07■□□□□ 0
ZNF540-205ENST00000587220 COL5A2P05997 1499 aaPredicted RBP15.07■□□□□ 0
ZNF540-205ENST00000587220 SOX12O15370 315 aa15.06■□□□□ 0
ZNF540-205ENST00000587220 PDE3BQ13370 1112 aa15.06■□□□□ 0
ZNF540-205ENST00000587220 BARGINQ6ZT62 677 aa15.06■□□□□ 0
ZNF540-205ENST00000587220 KCNH5Q8NCM2 988 aa15.06■□□□□ 0
ZNF540-205ENST00000587220 FAM196AQ6ZSG2 479 aa15.05■□□□□ -0
ZNF540-205ENST00000587220 THRAP3Q9Y2W1 955 aaKnown RBP15.05■□□□□ -0
ZNF540-205ENST00000587220 AATKQ6ZMQ8 1374 aa15.05■□□□□ -0
ZNF540-205ENST00000587220 CPSF1Q10570 1443 aaKnown RBP15.05■□□□□ -0
ZNF540-205ENST00000587220 MON2Q7Z3U7 1717 aa15.05■□□□□ -0
ZNF540-205ENST00000587220 CRB1P82279 1406 aa15.04■□□□□ -0
ZNF540-205ENST00000587220 HDGFL2Q7Z4V5 671 aaPredicted RBP15.04■□□□□ -0
ZNF540-205ENST00000587220 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.04■□□□□ -0
ZNF540-205ENST00000587220 TOM1L2Q6ZVM7 507 aa15.03■□□□□ -0
ZNF540-205ENST00000587220 TERF2IPQ9NYB0 399 aa15.02■□□□□ -0
ZNF540-205ENST00000587220 TNS1Q9HBL0 1735 aaKnown RBP15.01□□□□□ -0.01
ZNF540-205ENST00000587220 SLC24A1O60721 1099 aa15.01□□□□□ -0.01
ZNF540-205ENST00000587220 TRIM37O94972 964 aa15.01□□□□□ -0.01
ZNF540-205ENST00000587220 CSB-PGBD3P0DP91 1061 aa15.01□□□□□ -0.01
ZNF540-205ENST00000587220 EN1Q05925 392 aaPredicted RBP15.01□□□□□ -0.01
ZNF540-205ENST00000587220 PARP4Q9UKK3 1724 aaKnown RBP15□□□□□ -0.01
ZNF540-205ENST00000587220 ST20-MTHFSA0A0A6YYL1 179 aa15□□□□□ -0.01
ZNF540-205ENST00000587220 ARHGEF25Q86VW2 580 aa15□□□□□ -0.01
ZNF540-205ENST00000587220 SLC12A5Q9H2X9 1139 aa15□□□□□ -0.01
ZNF540-205ENST00000587220 COL18A1P39060 1754 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms