RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 COL22A1Q8NFW1 1626 aaPredicted RBP15.3■□□□□ 0.04
CLIP3-203ENST00000586457 TMC1Q8TDI8 760 aa15.3■□□□□ 0.04
CLIP3-203ENST00000586457 CCDC9Q9Y3X0 531 aaKnown RBP15.3■□□□□ 0.04
CLIP3-203ENST00000586457 NUTM2GQ5VZR2 741 aa15.29■□□□□ 0.04
CLIP3-203ENST00000586457 ZNF692Q9BU19 519 aaPredicted RBP15.29■□□□□ 0.04
CLIP3-203ENST00000586457 NLRP13Q86W25 1043 aa15.28■□□□□ 0.04
CLIP3-203ENST00000586457 POLR3AO14802 1390 aaPredicted RBP15.27■□□□□ 0.04
CLIP3-203ENST00000586457 ATAD2Q6PL18 1390 aa15.27■□□□□ 0.04
CLIP3-203ENST00000586457 ST20-MTHFSA0A0A6YYL1 179 aa15.27■□□□□ 0.04
CLIP3-203ENST00000586457 UNC5CLQ8IV45 518 aa15.26■□□□□ 0.03
CLIP3-203ENST00000586457 HDGFL2Q7Z4V5 671 aaPredicted RBP15.25■□□□□ 0.03
CLIP3-203ENST00000586457 PRDM11Q9NQV5 511 aa15.25■□□□□ 0.03
CLIP3-203ENST00000586457 BRD4O60885 1362 aaPredicted RBP15.24■□□□□ 0.03
CLIP3-203ENST00000586457 NLRP6P59044 892 aa15.24■□□□□ 0.03
CLIP3-203ENST00000586457 TMF1P82094 1093 aa15.24■□□□□ 0.03
CLIP3-203ENST00000586457 TERF2IPQ9NYB0 399 aa15.24■□□□□ 0.03
CLIP3-203ENST00000586457 SBNO2Q9Y2G9 1366 aa15.24■□□□□ 0.03
CLIP3-203ENST00000586457 FAM83GA6ND36 823 aa15.23■□□□□ 0.03
CLIP3-203ENST00000586457 EVA1CP58658 441 aa15.23■□□□□ 0.03
CLIP3-203ENST00000586457 ZC3H6P61129 1189 aaKnown RBP15.23■□□□□ 0.03
CLIP3-203ENST00000586457 CDCA8Q53HL2 280 aa15.23■□□□□ 0.03
CLIP3-203ENST00000586457 GJD4Q96KN9 370 aaPredicted RBP15.23■□□□□ 0.03
CLIP3-203ENST00000586457 BTG4Q9NY30 223 aa15.23■□□□□ 0.03
CLIP3-203ENST00000586457 A0A0G2JS52 829 aa15.22■□□□□ 0.03
CLIP3-203ENST00000586457 ZBTB7CA1YPR0 619 aa15.22■□□□□ 0.03
CLIP3-203ENST00000586457 MYT1Q01538 1121 aa15.22■□□□□ 0.03
CLIP3-203ENST00000586457 KTN1Q86UP2 1357 aaKnown RBP15.22■□□□□ 0.03
CLIP3-203ENST00000586457 MARF1Q9Y4F3 1742 aaKnown RBP15.21■□□□□ 0.03
CLIP3-203ENST00000586457 PUS7Q96PZ0 661 aaKnown RBP15.21■□□□□ 0.03
CLIP3-203ENST00000586457 TOPAZ1Q8N9V7 1692 aa15.21■□□□□ 0.03
CLIP3-203ENST00000586457 USP47Q96K76 1375 aa15.21■□□□□ 0.02
CLIP3-203ENST00000586457 TRPM3Q9HCF6 1732 aaPredicted RBP15.2■□□□□ 0.02
CLIP3-203ENST00000586457 USP6P35125 1406 aa15.19■□□□□ 0.02
CLIP3-203ENST00000586457 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.19■□□□□ 0.02
CLIP3-203ENST00000586457 BCL9LQ86UU0 1499 aa15.19■□□□□ 0.02
CLIP3-203ENST00000586457 ALS2Q96Q42 1657 aa15.19■□□□□ 0.02
CLIP3-203ENST00000586457 TTC21AQ8NDW8 1320 aa15.18■□□□□ 0.02
CLIP3-203ENST00000586457 GCP02774 474 aa15.18■□□□□ 0.02
CLIP3-203ENST00000586457 CHRNA2Q15822 529 aa15.18■□□□□ 0.02
CLIP3-203ENST00000586457 VPS72Q15906 364 aa15.18■□□□□ 0.02
CLIP3-203ENST00000586457 SLC12A5Q9H2X9 1139 aa15.18■□□□□ 0.02
CLIP3-203ENST00000586457 STRN4Q9NRL3 753 aa15.18■□□□□ 0.02
CLIP3-203ENST00000586457 CDK12Q9NYV4 1490 aaPredicted RBP15.18■□□□□ 0.02
CLIP3-203ENST00000586457 TTC21BQ7Z4L5 1316 aa15.17■□□□□ 0.02
CLIP3-203ENST00000586457 ATRNO75882 1429 aa15.17■□□□□ 0.02
CLIP3-203ENST00000586457 KIAA0232Q92628 1395 aa15.17■□□□□ 0.02
CLIP3-203ENST00000586457 KCNH5Q8NCM2 988 aa15.17■□□□□ 0.02
CLIP3-203ENST00000586457 SOX12O15370 315 aa15.16■□□□□ 0.02
CLIP3-203ENST00000586457 TESK2Q96S53 571 aa15.16■□□□□ 0.02
CLIP3-203ENST00000586457 POLR3GLQ9BT43 218 aa15.16■□□□□ 0.02
CLIP3-203ENST00000586457 SLIT2O94813 1529 aa15.16■□□□□ 0.02
CLIP3-203ENST00000586457 EIF4G2P78344 907 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLIP3-203ENST00000586457 NINLQ9Y2I6 1382 aa15.14■□□□□ 0.01
CLIP3-203ENST00000586457 COL14A1Q05707 1796 aaKnown RBP15.13■□□□□ 0.01
CLIP3-203ENST00000586457 ABCA3Q99758 1704 aa15.12■□□□□ 0.01
CLIP3-203ENST00000586457 RGS12O14924 1447 aa15.12■□□□□ 0.01
CLIP3-203ENST00000586457 CPSF1Q10570 1443 aaKnown RBP15.12■□□□□ 0.01
CLIP3-203ENST00000586457 SEPT12Q8IYM1 358 aa15.12■□□□□ 0.01
CLIP3-203ENST00000586457 USP35Q9P2H5 1018 aa15.12■□□□□ 0.01
CLIP3-203ENST00000586457 USP19O94966 1318 aa15.12■□□□□ 0.01
CLIP3-203ENST00000586457 NWD2Q9ULI1 1742 aa15.12■□□□□ 0.01
CLIP3-203ENST00000586457 FAM98CQ17RN3 349 aaKnown RBP15.11■□□□□ 0.01
CLIP3-203ENST00000586457 PLCH1Q4KWH8 1693 aa15.11■□□□□ 0.01
CLIP3-203ENST00000586457 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.11■□□□□ 0.01
CLIP3-203ENST00000586457 UPF1Q92900 1129 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLIP3-203ENST00000586457 CPDO75976 1380 aa15.1■□□□□ 0.01
CLIP3-203ENST00000586457 CSB-PGBD3P0DP91 1061 aa15.09■□□□□ 0.01
CLIP3-203ENST00000586457 NME9Q86XW9 330 aa15.09■□□□□ 0.01
CLIP3-203ENST00000586457 COG3Q96JB2 828 aa15.09■□□□□ 0.01
CLIP3-203ENST00000586457 PHRF1Q9P1Y6 1649 aaKnown RBP15.09■□□□□ 0.01
CLIP3-203ENST00000586457 EDC4Q6P2E9 1401 aaKnown RBP15.09■□□□□ 0.01
CLIP3-203ENST00000586457 SSH2Q76I76 1423 aa15.09■□□□□ 0.01
CLIP3-203ENST00000586457 SF3B2Q13435 895 aaKnown RBP15.08■□□□□ 0
CLIP3-203ENST00000586457 KRT27Q7Z3Y8 459 aa15.08■□□□□ 0
CLIP3-203ENST00000586457 SPATA31A5Q5VU36 1347 aa15.08■□□□□ 0
CLIP3-203ENST00000586457 SPATA31A7Q8IWB4 1347 aa15.08■□□□□ 0
CLIP3-203ENST00000586457 A0A1W2PP64 1363 aa15.08■□□□□ 0
CLIP3-203ENST00000586457 AKAP12Q02952 1782 aa15.08■□□□□ 0
CLIP3-203ENST00000586457 HSPA5P11021 654 aaKnown RBP15.07■□□□□ 0
CLIP3-203ENST00000586457 TOM1L2Q6ZVM7 507 aa15.07■□□□□ 0
CLIP3-203ENST00000586457 ONECUT3O60422 494 aaPredicted RBP15.06■□□□□ 0
CLIP3-203ENST00000586457 LARP1Q6PKG0 1096 aaKnown RBP15.06■□□□□ 0
CLIP3-203ENST00000586457 CCDC125Q86Z20 511 aa15.06■□□□□ 0
CLIP3-203ENST00000586457 ZRANB1Q9UGI0 708 aa15.06■□□□□ 0
CLIP3-203ENST00000586457 PDE3BQ13370 1112 aa15.05■□□□□ -0
CLIP3-203ENST00000586457 ARHGEF25Q86VW2 580 aa15.05■□□□□ -0
CLIP3-203ENST00000586457 TCP11L2Q8N4U5 519 aa15.05■□□□□ -0
CLIP3-203ENST00000586457 SPATA31A1Q5TZJ5 1347 aa15.05■□□□□ -0
CLIP3-203ENST00000586457 AATKQ6ZMQ8 1374 aa15.05■□□□□ -0
CLIP3-203ENST00000586457 ANKRD36BQ8N2N9 1353 aa15.05■□□□□ -0
CLIP3-203ENST00000586457 NRKQ7Z2Y5 1582 aa15.05■□□□□ -0
CLIP3-203ENST00000586457 CRYBG1Q9Y4K1 1723 aa15.05■□□□□ -0
CLIP3-203ENST00000586457 THRAP3Q9Y2W1 955 aaKnown RBP15.04■□□□□ -0
CLIP3-203ENST00000586457 PIK3C2AO00443 1686 aa15.03■□□□□ -0
CLIP3-203ENST00000586457 GLI3P10071 1580 aa15.03■□□□□ -0
CLIP3-203ENST00000586457 USP31Q70CQ4 1352 aa15.03■□□□□ -0
CLIP3-203ENST00000586457 MON2Q7Z3U7 1717 aa15.03■□□□□ -0
CLIP3-203ENST00000586457 CD163L1Q9NR16 1453 aa15.02■□□□□ -0
CLIP3-203ENST00000586457 SLIT3O75094 1523 aa15.02□□□□□ -0.01
CLIP3-203ENST00000586457 CAMTA1Q9Y6Y1 1673 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms