RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 POLR3AO14802 1390 aaPredicted RBP40.13■■■■■ 4.02
LIG3-208ENST00000586407 PPIP5K1Q6PFW1 1433 aa40.13■■■■■ 4.01
LIG3-208ENST00000586407 TNKS1BP1Q9C0C2 1729 aaKnown RBP40.13■■■■■ 4.01
LIG3-208ENST00000586407 RALGAPBQ86X10 1494 aa40.13■■■■■ 4.01
LIG3-208ENST00000586407 SLIT2O94813 1529 aa40.12■■■■■ 4.01
LIG3-208ENST00000586407 PLEKHG3A1L390 1219 aa40.1■■■■■ 4.01
LIG3-208ENST00000586407 CARD11Q9BXL7 1154 aa40.08■■■■■ 4.01
LIG3-208ENST00000586407 PCGF6Q9BYE7 350 aa40.07■■■■■ 4.01
LIG3-208ENST00000586407 NUTM2GQ5VZR2 741 aa40.06■■■■■ 4
LIG3-208ENST00000586407 EVC2Q86UK5 1308 aa40.05■■■■■ 4
LIG3-208ENST00000586407 UNC5CLQ8IV45 518 aa40.04■■■■■ 4
LIG3-208ENST00000586407 NWD2Q9ULI1 1742 aa40.03■■■■■ 4
LIG3-208ENST00000586407 PHRF1Q9P1Y6 1649 aaKnown RBP40.03■■■■■ 4
LIG3-208ENST00000586407 CABP1Q9NZU7 370 aa40.02■■■■■ 4
LIG3-208ENST00000586407 FAM83GA6ND36 823 aa40.01■■■■■ 4
LIG3-208ENST00000586407 GLI3P10071 1580 aa40■■■■□ 3.99
LIG3-208ENST00000586407 NRAPQ86VF7 1730 aa39.97■■■■□ 3.99
LIG3-208ENST00000586407 GJD4Q96KN9 370 aaPredicted RBP39.97■■■■□ 3.99
LIG3-208ENST00000586407 COL14A1Q05707 1796 aaKnown RBP39.96■■■■□ 3.99
LIG3-208ENST00000586407 UPF1Q92900 1129 aaKnown RBP eCLIP39.93■■■■□ 3.98
LIG3-208ENST00000586407 ABTB2Q8N961 1025 aa39.91■■■■□ 3.98
LIG3-208ENST00000586407 USP6P35125 1406 aa39.91■■■■□ 3.98
LIG3-208ENST00000586407 BTG4Q9NY30 223 aa39.89■■■■□ 3.98
LIG3-208ENST00000586407 AKAP12Q02952 1782 aa39.89■■■■□ 3.98
LIG3-208ENST00000586407 NRKQ7Z2Y5 1582 aa39.89■■■■□ 3.98
LIG3-208ENST00000586407 SBNO2Q9Y2G9 1366 aa39.88■■■■□ 3.97
LIG3-208ENST00000586407 KIAA0232Q92628 1395 aa39.87■■■■□ 3.97
LIG3-208ENST00000586407 VPS72Q15906 364 aa39.87■■■■□ 3.97
LIG3-208ENST00000586407 PRDM11Q9NQV5 511 aa39.87■■■■□ 3.97
LIG3-208ENST00000586407 CCDC9Q9Y3X0 531 aaKnown RBP39.87■■■■□ 3.97
LIG3-208ENST00000586407 ZC3H6P61129 1189 aaKnown RBP39.85■■■■□ 3.97
LIG3-208ENST00000586407 CHRNA2Q15822 529 aa39.84■■■■□ 3.97
LIG3-208ENST00000586407 BRWD3Q6RI45 1802 aa39.83■■■■□ 3.97
LIG3-208ENST00000586407 PIK3C2AO00443 1686 aa39.82■■■■□ 3.96
LIG3-208ENST00000586407 ATAD2Q6PL18 1390 aa39.82■■■■□ 3.96
LIG3-208ENST00000586407 USP19O94966 1318 aa39.8■■■■□ 3.96
LIG3-208ENST00000586407 SSH2Q76I76 1423 aa39.8■■■■□ 3.96
LIG3-208ENST00000586407 BRD4O60885 1362 aaPredicted RBP39.77■■■■□ 3.96
LIG3-208ENST00000586407 NLRP13Q86W25 1043 aa39.76■■■■□ 3.96
LIG3-208ENST00000586407 ST20-MTHFSA0A0A6YYL1 179 aa39.75■■■■□ 3.95
LIG3-208ENST00000586407 MON2Q7Z3U7 1717 aa39.74■■■■□ 3.95
LIG3-208ENST00000586407 CPSF1Q10570 1443 aaKnown RBP39.74■■■■□ 3.95
LIG3-208ENST00000586407 NLRP6P59044 892 aa39.73■■■■□ 3.95
LIG3-208ENST00000586407 SEPT12Q8IYM1 358 aa39.72■■■■□ 3.95
LIG3-208ENST00000586407 TESK2Q96S53 571 aa39.71■■■■□ 3.95
LIG3-208ENST00000586407 TTC21BQ7Z4L5 1316 aa39.7■■■■□ 3.95
LIG3-208ENST00000586407 CLSPNQ9HAW4 1339 aa39.7■■■■□ 3.95
LIG3-208ENST00000586407 KTN1Q86UP2 1357 aaKnown RBP39.7■■■■□ 3.95
LIG3-208ENST00000586407 GCP02774 474 aa39.69■■■■□ 3.94
LIG3-208ENST00000586407 TMC1Q8TDI8 760 aa39.69■■■■□ 3.94
LIG3-208ENST00000586407 STRN4Q9NRL3 753 aa39.69■■■■□ 3.94
LIG3-208ENST00000586407 SLIT3O75094 1523 aa39.69■■■■□ 3.94
LIG3-208ENST00000586407 CD163L1Q9NR16 1453 aa39.68■■■■□ 3.94
LIG3-208ENST00000586407 LMO7Q8WWI1 1683 aa39.68■■■■□ 3.94
LIG3-208ENST00000586407 ZNF692Q9BU19 519 aaPredicted RBP39.68■■■■□ 3.94
LIG3-208ENST00000586407 FAM98CQ17RN3 349 aaKnown RBP39.67■■■■□ 3.94
LIG3-208ENST00000586407 CAMTA1Q9Y6Y1 1673 aa39.67■■■■□ 3.94
LIG3-208ENST00000586407 ZBTB7CA1YPR0 619 aa39.66■■■■□ 3.94
LIG3-208ENST00000586407 CPDO75976 1380 aa39.66■■■■□ 3.94
LIG3-208ENST00000586407 USP47Q96K76 1375 aa39.66■■■■□ 3.94
LIG3-208ENST00000586407 A0A0G2JS52 829 aa39.65■■■■□ 3.94
LIG3-208ENST00000586407 MYT1Q01538 1121 aa39.65■■■■□ 3.94
LIG3-208ENST00000586407 SLC12A5Q9H2X9 1139 aa39.65■■■■□ 3.94
LIG3-208ENST00000586407 SPATA31A5Q5VU36 1347 aa39.65■■■■□ 3.94
LIG3-208ENST00000586407 SPATA31A7Q8IWB4 1347 aa39.65■■■■□ 3.94
LIG3-208ENST00000586407 CCER1Q8TC90 406 aaPredicted RBP39.64■■■■□ 3.94
LIG3-208ENST00000586407 ONECUT3O60422 494 aaPredicted RBP39.62■■■■□ 3.93
LIG3-208ENST00000586407 SUGP2Q8IX01 1082 aaKnown RBP eCLIP39.6■■■■□ 3.93
LIG3-208ENST00000586407 TTC21AQ8NDW8 1320 aa39.59■■■■□ 3.93
LIG3-208ENST00000586407 SOX12O15370 315 aa39.58■■■■□ 3.93
LIG3-208ENST00000586407 ZRANB1Q9UGI0 708 aa39.58■■■■□ 3.93
LIG3-208ENST00000586407 TIMELESSQ9UNS1 1208 aa39.58■■■■□ 3.93
LIG3-208ENST00000586407 THSD7AQ9UPZ6 1657 aa39.56■■■■□ 3.92
LIG3-208ENST00000586407 SPATA31A1Q5TZJ5 1347 aa39.56■■■■□ 3.92
LIG3-208ENST00000586407 EVA1CP58658 441 aa39.55■■■■□ 3.92
LIG3-208ENST00000586407 A0A1W2PP64 1363 aa39.55■■■■□ 3.92
LIG3-208ENST00000586407 USP35Q9P2H5 1018 aa39.54■■■■□ 3.92
LIG3-208ENST00000586407 COL18A1P39060 1754 aa39.54■■■■□ 3.92
LIG3-208ENST00000586407 LARP1Q6PKG0 1096 aaKnown RBP39.53■■■■□ 3.92
LIG3-208ENST00000586407 KRT27Q7Z3Y8 459 aa39.53■■■■□ 3.92
LIG3-208ENST00000586407 HDGFL2Q7Z4V5 671 aaPredicted RBP39.53■■■■□ 3.92
LIG3-208ENST00000586407 NME9Q86XW9 330 aa39.52■■■■□ 3.92
LIG3-208ENST00000586407 PUS7Q96PZ0 661 aaKnown RBP39.51■■■■□ 3.92
LIG3-208ENST00000586407 COL5A2P05997 1499 aaPredicted RBP39.5■■■■□ 3.91
LIG3-208ENST00000586407 RGPD5Q99666 1765 aa39.5■■■■□ 3.91
LIG3-208ENST00000586407 NFAT5O94916 1531 aa39.49■■■■□ 3.91
LIG3-208ENST00000586407 EP400Q96L91 3159 aa39.49■■■■□ 3.91
LIG3-208ENST00000586407 USP54Q70EL1 1684 aa39.48■■■■□ 3.91
LIG3-208ENST00000586407 TERF2IPQ9NYB0 399 aa39.47■■■■□ 3.91
LIG3-208ENST00000586407 EDC4Q6P2E9 1401 aaKnown RBP39.47■■■■□ 3.91
LIG3-208ENST00000586407 AATKQ6ZMQ8 1374 aa39.46■■■■□ 3.91
LIG3-208ENST00000586407 FAM182BQ5T319 152 aa39.45■■■■□ 3.91
LIG3-208ENST00000586407 TMF1P82094 1093 aa39.44■■■■□ 3.9
LIG3-208ENST00000586407 KCNH5Q8NCM2 988 aa39.43■■■■□ 3.9
LIG3-208ENST00000586407 USP31Q70CQ4 1352 aa39.43■■■■□ 3.9
LIG3-208ENST00000586407 ARHGEF25Q86VW2 580 aa39.42■■■■□ 3.9
LIG3-208ENST00000586407 AXIN2Q9Y2T1 843 aa39.42■■■■□ 3.9
LIG3-208ENST00000586407 NINLQ9Y2I6 1382 aa39.4■■■■□ 3.9
LIG3-208ENST00000586407 SLC24A1O60721 1099 aa39.39■■■■□ 3.9
LIG3-208ENST00000586407 BLMP54132 1417 aaPredicted RBP39.39■■■■□ 3.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms