RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 PPIP5K1Q6PFW1 1433 aa21.72■■□□□ 1.07
CLIP3-202ENST00000585466 PHRF1Q9P1Y6 1649 aaKnown RBP21.7■■□□□ 1.06
CLIP3-202ENST00000585466 SBNO2Q9Y2G9 1366 aa21.7■■□□□ 1.06
CLIP3-202ENST00000585466 NRAPQ86VF7 1730 aa21.69■■□□□ 1.06
CLIP3-202ENST00000585466 SRPK2P78362 688 aaKnown RBP21.69■■□□□ 1.06
CLIP3-202ENST00000585466 LMOD2Q6P5Q4 547 aa21.69■■□□□ 1.06
CLIP3-202ENST00000585466 TRPC5Q9UL62 973 aaPredicted RBP21.69■■□□□ 1.06
CLIP3-202ENST00000585466 GLI3P10071 1580 aa21.69■■□□□ 1.06
CLIP3-202ENST00000585466 EVC2Q86UK5 1308 aa21.66■■□□□ 1.06
CLIP3-202ENST00000585466 SSH2Q76I76 1423 aa21.65■■□□□ 1.06
CLIP3-202ENST00000585466 FAM83GA6ND36 823 aa21.65■■□□□ 1.06
CLIP3-202ENST00000585466 PLEKHG5O94827 1062 aa21.65■■□□□ 1.06
CLIP3-202ENST00000585466 UNC5CLQ8IV45 518 aa21.65■■□□□ 1.06
CLIP3-202ENST00000585466 CARD11Q9BXL7 1154 aa21.65■■□□□ 1.06
CLIP3-202ENST00000585466 AKAP12Q02952 1782 aa21.65■■□□□ 1.06
CLIP3-202ENST00000585466 COL14A1Q05707 1796 aaKnown RBP21.65■■□□□ 1.06
CLIP3-202ENST00000585466 NRKQ7Z2Y5 1582 aa21.64■■□□□ 1.05
CLIP3-202ENST00000585466 USP6P35125 1406 aa21.63■■□□□ 1.05
CLIP3-202ENST00000585466 PAK3O75914 559 aaPredicted RBP21.63■■□□□ 1.05
CLIP3-202ENST00000585466 CABP1Q9NZU7 370 aa21.63■■□□□ 1.05
CLIP3-202ENST00000585466 PCGF6Q9BYE7 350 aa21.62■■□□□ 1.05
CLIP3-202ENST00000585466 HAP1P54257 671 aaPredicted RBP21.61■■□□□ 1.05
CLIP3-202ENST00000585466 GJD4Q96KN9 370 aaPredicted RBP21.61■■□□□ 1.05
CLIP3-202ENST00000585466 USP19O94966 1318 aa21.6■■□□□ 1.05
CLIP3-202ENST00000585466 PIK3C2AO00443 1686 aa21.6■■□□□ 1.05
CLIP3-202ENST00000585466 BRD4O60885 1362 aaPredicted RBP21.6■■□□□ 1.05
CLIP3-202ENST00000585466 CLSPNQ9HAW4 1339 aa21.59■■□□□ 1.05
CLIP3-202ENST00000585466 CPSF1Q10570 1443 aaKnown RBP21.59■■□□□ 1.05
CLIP3-202ENST00000585466 UPF1Q92900 1129 aaKnown RBP eCLIP21.59■■□□□ 1.05
CLIP3-202ENST00000585466 VPS72Q15906 364 aa21.58■■□□□ 1.05
CLIP3-202ENST00000585466 NUTM2GQ5VZR2 741 aa21.58■■□□□ 1.05
CLIP3-202ENST00000585466 ATAD2Q6PL18 1390 aa21.58■■□□□ 1.04
CLIP3-202ENST00000585466 CD163L1Q9NR16 1453 aa21.58■■□□□ 1.04
CLIP3-202ENST00000585466 MON2Q7Z3U7 1717 aa21.58■■□□□ 1.04
CLIP3-202ENST00000585466 TESK2Q96S53 571 aa21.57■■□□□ 1.04
CLIP3-202ENST00000585466 BRWD3Q6RI45 1802 aa21.57■■□□□ 1.04
CLIP3-202ENST00000585466 LMO7Q8WWI1 1683 aa21.56■■□□□ 1.04
CLIP3-202ENST00000585466 SLIT3O75094 1523 aa21.56■■□□□ 1.04
CLIP3-202ENST00000585466 KIAA0232Q92628 1395 aa21.56■■□□□ 1.04
CLIP3-202ENST00000585466 ABTB2Q8N961 1025 aa21.54■■□□□ 1.04
CLIP3-202ENST00000585466 BTG4Q9NY30 223 aa21.54■■□□□ 1.04
CLIP3-202ENST00000585466 EP400Q96L91 3159 aa21.52■■□□□ 1.04
CLIP3-202ENST00000585466 CPDO75976 1380 aa21.52■■□□□ 1.04
CLIP3-202ENST00000585466 PRDM11Q9NQV5 511 aa21.52■■□□□ 1.04
CLIP3-202ENST00000585466 ST20-MTHFSA0A0A6YYL1 179 aa21.51■■□□□ 1.03
CLIP3-202ENST00000585466 ONECUT3O60422 494 aaPredicted RBP21.51■■□□□ 1.03
CLIP3-202ENST00000585466 TIMELESSQ9UNS1 1208 aa21.51■■□□□ 1.03
CLIP3-202ENST00000585466 USP54Q70EL1 1684 aa21.5■■□□□ 1.03
CLIP3-202ENST00000585466 CAMTA1Q9Y6Y1 1673 aa21.5■■□□□ 1.03
CLIP3-202ENST00000585466 TTC21BQ7Z4L5 1316 aa21.5■■□□□ 1.03
CLIP3-202ENST00000585466 ZC3H6P61129 1189 aaKnown RBP21.49■■□□□ 1.03
CLIP3-202ENST00000585466 CHRNA2Q15822 529 aa21.49■■□□□ 1.03
CLIP3-202ENST00000585466 COL18A1P39060 1754 aa21.48■■□□□ 1.03
CLIP3-202ENST00000585466 THSD7AQ9UPZ6 1657 aa21.48■■□□□ 1.03
CLIP3-202ENST00000585466 NLRP13Q86W25 1043 aa21.48■■□□□ 1.03
CLIP3-202ENST00000585466 PUS7Q96PZ0 661 aaKnown RBP21.48■■□□□ 1.03
CLIP3-202ENST00000585466 ZNF692Q9BU19 519 aaPredicted RBP21.48■■□□□ 1.03
CLIP3-202ENST00000585466 USP47Q96K76 1375 aa21.48■■□□□ 1.03
CLIP3-202ENST00000585466 GCP02774 474 aa21.47■■□□□ 1.03
CLIP3-202ENST00000585466 SPATA31A5Q5VU36 1347 aa21.47■■□□□ 1.03
CLIP3-202ENST00000585466 SPATA31A7Q8IWB4 1347 aa21.47■■□□□ 1.03
CLIP3-202ENST00000585466 KTN1Q86UP2 1357 aaKnown RBP21.46■■□□□ 1.03
CLIP3-202ENST00000585466 NLRP6P59044 892 aa21.45■■□□□ 1.02
CLIP3-202ENST00000585466 SEPT12Q8IYM1 358 aa21.45■■□□□ 1.02
CLIP3-202ENST00000585466 TTC21AQ8NDW8 1320 aa21.45■■□□□ 1.02
CLIP3-202ENST00000585466 NFAT5O94916 1531 aa21.45■■□□□ 1.02
CLIP3-202ENST00000585466 SLC12A5Q9H2X9 1139 aa21.44■■□□□ 1.02
CLIP3-202ENST00000585466 A0A1W2PP64 1363 aa21.43■■□□□ 1.02
CLIP3-202ENST00000585466 COL5A2P05997 1499 aaPredicted RBP21.42■■□□□ 1.02
CLIP3-202ENST00000585466 CCDC9Q9Y3X0 531 aaKnown RBP21.42■■□□□ 1.02
CLIP3-202ENST00000585466 USP31Q70CQ4 1352 aa21.41■■□□□ 1.02
CLIP3-202ENST00000585466 SPATA31A1Q5TZJ5 1347 aa21.41■■□□□ 1.02
CLIP3-202ENST00000585466 FAM98CQ17RN3 349 aaKnown RBP21.4■■□□□ 1.02
CLIP3-202ENST00000585466 EDC4Q6P2E9 1401 aaKnown RBP21.39■■□□□ 1.02
CLIP3-202ENST00000585466 AATKQ6ZMQ8 1374 aa21.39■■□□□ 1.02
CLIP3-202ENST00000585466 NINLQ9Y2I6 1382 aa21.39■■□□□ 1.02
CLIP3-202ENST00000585466 ZRANB1Q9UGI0 708 aa21.39■■□□□ 1.01
CLIP3-202ENST00000585466 RGPD5Q99666 1765 aa21.38■■□□□ 1.01
CLIP3-202ENST00000585466 TMC1Q8TDI8 760 aa21.38■■□□□ 1.01
CLIP3-202ENST00000585466 MYOM1P52179 1685 aa21.37■■□□□ 1.01
CLIP3-202ENST00000585466 NME9Q86XW9 330 aa21.37■■□□□ 1.01
CLIP3-202ENST00000585466 STRN4Q9NRL3 753 aa21.37■■□□□ 1.01
CLIP3-202ENST00000585466 LARP1Q6PKG0 1096 aaKnown RBP21.36■■□□□ 1.01
CLIP3-202ENST00000585466 ARHGEF25Q86VW2 580 aa21.36■■□□□ 1.01
CLIP3-202ENST00000585466 CCER1Q8TC90 406 aaPredicted RBP21.36■■□□□ 1.01
CLIP3-202ENST00000585466 OVOS2A0A0J9YW53 1432 aa21.36■■□□□ 1.01
CLIP3-202ENST00000585466 OVOS2Q6IE36 1432 aa21.36■■□□□ 1.01
CLIP3-202ENST00000585466 KRT27Q7Z3Y8 459 aa21.35■■□□□ 1.01
CLIP3-202ENST00000585466 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.35■■□□□ 1.01
CLIP3-202ENST00000585466 ABCC6O95255 1503 aa21.34■■□□□ 1.01
CLIP3-202ENST00000585466 SLC24A1O60721 1099 aa21.34■■□□□ 1.01
CLIP3-202ENST00000585466 HDGFL2Q7Z4V5 671 aaPredicted RBP21.34■■□□□ 1.01
CLIP3-202ENST00000585466 AXIN2Q9Y2T1 843 aa21.34■■□□□ 1.01
CLIP3-202ENST00000585466 TERF2IPQ9NYB0 399 aa21.33■■□□□ 1.01
CLIP3-202ENST00000585466 LTN1O94822 1766 aa21.33■■□□□ 1
CLIP3-202ENST00000585466 WNK3Q9BYP7 1800 aa21.32■■□□□ 1
CLIP3-202ENST00000585466 TMF1P82094 1093 aa21.32■■□□□ 1
CLIP3-202ENST00000585466 BARGINQ6ZT62 677 aa21.32■■□□□ 1
CLIP3-202ENST00000585466 KCNH5Q8NCM2 988 aa21.32■■□□□ 1
CLIP3-202ENST00000585466 ANKRD36BQ8N2N9 1353 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms