RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 FKBPLQ9UIM3 349 aa9.46□□□□□ -0.9
SMCHD1-204ENST00000581226 RAD21O60216 631 aa9.45□□□□□ -0.9
SMCHD1-204ENST00000581226 CD2BP2O95400 341 aaKnown RBP9.45□□□□□ -0.9
SMCHD1-204ENST00000581226 TRIM32Q13049 653 aa9.45□□□□□ -0.9
SMCHD1-204ENST00000581226 EMID1Q96A84 441 aaPredicted RBP9.45□□□□□ -0.9
SMCHD1-204ENST00000581226 GDPD2Q9HCC8 539 aa9.45□□□□□ -0.9
SMCHD1-204ENST00000581226 TBC1D2BQ9UPU7 963 aa9.45□□□□□ -0.9
SMCHD1-204ENST00000581226 POM121Q96HA1 1249 aa9.44□□□□□ -0.9
SMCHD1-204ENST00000581226 PRKD2Q9BZL6 878 aa9.44□□□□□ -0.9
SMCHD1-204ENST00000581226 LINC01559Q495D7 138 aa9.43□□□□□ -0.9
SMCHD1-204ENST00000581226 NBPF14Q5TI25 921 aa9.43□□□□□ -0.9
SMCHD1-204ENST00000581226 C14orf37Q86TY3 774 aa9.43□□□□□ -0.9
SMCHD1-204ENST00000581226 COG6Q9Y2V7 657 aa9.43□□□□□ -0.9
SMCHD1-204ENST00000581226 ABL2P42684 1182 aa9.42□□□□□ -0.9
SMCHD1-204ENST00000581226 ZC3H4Q9UPT8 1303 aaKnown RBP9.41□□□□□ -0.9
SMCHD1-204ENST00000581226 SPRYD7Q5W111 196 aa9.41□□□□□ -0.9
SMCHD1-204ENST00000581226 ZNF511Q8NB15 262 aa9.41□□□□□ -0.9
SMCHD1-204ENST00000581226 GPKOWQ92917 476 aaPredicted RBP eCLIP9.41□□□□□ -0.93e-6■■□□□ 13
SMCHD1-204ENST00000581226 CLUAP1Q96AJ1 413 aa9.41□□□□□ -0.9
SMCHD1-204ENST00000581226 V9GY48 417 aaPredicted RBP9.41□□□□□ -0.9
SMCHD1-204ENST00000581226 SH3BP2P78314 561 aa9.4□□□□□ -0.9
SMCHD1-204ENST00000581226 AGERQ15109 404 aa9.4□□□□□ -0.9
SMCHD1-204ENST00000581226 WNT7BP56706 349 aa9.39□□□□□ -0.91
SMCHD1-204ENST00000581226 LAPTM4AQ15012 233 aa9.39□□□□□ -0.91
SMCHD1-204ENST00000581226 PDXDC2PQ6P474 469 aa9.39□□□□□ -0.91
SMCHD1-204ENST00000581226 GFRA3O60609 400 aa9.38□□□□□ -0.91
SMCHD1-204ENST00000581226 GPR37L1O60883 481 aa9.38□□□□□ -0.91
SMCHD1-204ENST00000581226 SKOR1P84550 965 aa9.38□□□□□ -0.91
SMCHD1-204ENST00000581226 PTK2Q05397 1052 aa9.38□□□□□ -0.91
SMCHD1-204ENST00000581226 ZNF697Q5TEC3 545 aa9.38□□□□□ -0.91
SMCHD1-204ENST00000581226 ZNF598Q86UK7 904 aaKnown RBP9.38□□□□□ -0.91
SMCHD1-204ENST00000581226 ERICH6Q7L0X2 663 aa9.37□□□□□ -0.91
SMCHD1-204ENST00000581226 BPHLQ86WA6 291 aaPredicted RBP9.37□□□□□ -0.91
SMCHD1-204ENST00000581226 WWC1Q8IX03 1113 aa9.37□□□□□ -0.91
SMCHD1-204ENST00000581226 FOXJ1Q92949 421 aa9.37□□□□□ -0.91
SMCHD1-204ENST00000581226 A6NJR5 290 aa9.36□□□□□ -0.91
SMCHD1-204ENST00000581226 IRF5Q13568 498 aa9.36□□□□□ -0.91
SMCHD1-204ENST00000581226 SH3BP5LQ7L8J4 393 aa9.36□□□□□ -0.91
SMCHD1-204ENST00000581226 ARHGAP9Q9BRR9 750 aa9.36□□□□□ -0.91
SMCHD1-204ENST00000581226 ZMYND15Q9H091 742 aa9.36□□□□□ -0.91
SMCHD1-204ENST00000581226 GPSM3Q9Y4H4 160 aa9.36□□□□□ -0.91
SMCHD1-204ENST00000581226 MAGEB6P1A0A0J9YX57 407 aa9.35□□□□□ -0.91
SMCHD1-204ENST00000581226 ZBBXA8MT70 800 aa9.35□□□□□ -0.91
SMCHD1-204ENST00000581226 RC3H1Q5TC82 1133 aaKnown RBP9.35□□□□□ -0.91
SMCHD1-204ENST00000581226 TRAF7Q6Q0C0 670 aa9.35□□□□□ -0.91
SMCHD1-204ENST00000581226 LCE2BO14633 110 aa9.34□□□□□ -0.91
SMCHD1-204ENST00000581226 FOXC1Q12948 553 aa9.34□□□□□ -0.91
SMCHD1-204ENST00000581226 ZBTB33Q86T24 672 aa9.34□□□□□ -0.91
SMCHD1-204ENST00000581226 PROSER2Q86WR7 435 aaPredicted RBP9.34□□□□□ -0.91
SMCHD1-204ENST00000581226 EHBP1Q8NDI1 1231 aa9.34□□□□□ -0.91
SMCHD1-204ENST00000581226 CARD14Q9BXL6 1004 aa9.34□□□□□ -0.91
SMCHD1-204ENST00000581226 FBXO45P0C2W1 286 aa9.33□□□□□ -0.92
SMCHD1-204ENST00000581226 NR1H3Q13133 447 aa9.33□□□□□ -0.92
SMCHD1-204ENST00000581226 C4orf48Q5BLP8 95 aa9.33□□□□□ -0.92
SMCHD1-204ENST00000581226 SH3RF1Q7Z6J0 888 aa9.33□□□□□ -0.92
SMCHD1-204ENST00000581226 WNT7AO00755 349 aa9.32□□□□□ -0.92
SMCHD1-204ENST00000581226 VARSP26640 1264 aaKnown RBP9.32□□□□□ -0.92
SMCHD1-204ENST00000581226 VAC14Q08AM6 782 aa9.32□□□□□ -0.92
SMCHD1-204ENST00000581226 WASHC4Q2M389 1173 aa9.32□□□□□ -0.92
SMCHD1-204ENST00000581226 OCSTAMPQ9BR26 566 aa9.32□□□□□ -0.92
SMCHD1-204ENST00000581226 TIMELESSQ9UNS1 1208 aa9.32□□□□□ -0.92
SMCHD1-204ENST00000581226 FNBP4Q8N3X1 1017 aaPredicted RBP9.31□□□□□ -0.92
SMCHD1-204ENST00000581226 ADAM32Q8TC27 787 aa9.31□□□□□ -0.92
SMCHD1-204ENST00000581226 MRGPRX2Q96LB1 330 aa9.31□□□□□ -0.92
SMCHD1-204ENST00000581226 ZNF330Q9Y3S2 320 aaPredicted RBP9.31□□□□□ -0.92
SMCHD1-204ENST00000581226 FAM174AQ8TBP5 190 aa9.3□□□□□ -0.92
SMCHD1-204ENST00000581226 PKD2L1Q9P0L9 805 aa9.3□□□□□ -0.92
SMCHD1-204ENST00000581226 ERFEQ4G0M1 354 aa9.29□□□□□ -0.92
SMCHD1-204ENST00000581226 TRAK2O60296 914 aa9.28□□□□□ -0.92
SMCHD1-204ENST00000581226 GDF9O60383 454 aa9.28□□□□□ -0.92
SMCHD1-204ENST00000581226 EIF4G2P78344 907 aaKnown RBP eCLIP9.28□□□□□ -0.92
SMCHD1-204ENST00000581226 C1QTNF2Q9BXJ5 285 aa9.28□□□□□ -0.92
SMCHD1-204ENST00000581226 TNFRSF10AO00220 468 aa9.27□□□□□ -0.93
SMCHD1-204ENST00000581226 DZIP3Q86Y13 1208 aaKnown RBP9.27□□□□□ -0.93
SMCHD1-204ENST00000581226 PCDHB9Q9Y5E1 797 aa9.27□□□□□ -0.93
SMCHD1-204ENST00000581226 NRG2O14511 850 aaPredicted RBP9.26□□□□□ -0.93
SMCHD1-204ENST00000581226 SIAH2O43255 324 aa9.26□□□□□ -0.93
SMCHD1-204ENST00000581226 ARID5BQ14865 1188 aa9.26□□□□□ -0.93
SMCHD1-204ENST00000581226 TRMT44Q8IYL2 757 aaKnown RBP9.26□□□□□ -0.93
SMCHD1-204ENST00000581226 SLC10A4Q96EP9 437 aa9.26□□□□□ -0.93
SMCHD1-204ENST00000581226 POM121CA8CG34 1229 aa9.25□□□□□ -0.93
SMCHD1-204ENST00000581226 TRIM67Q6ZTA4 783 aa9.25□□□□□ -0.93
SMCHD1-204ENST00000581226 CYP4X1Q8N118 509 aa9.25□□□□□ -0.93
SMCHD1-204ENST00000581226 PDZRN3Q9UPQ7 1066 aa9.25□□□□□ -0.93
SMCHD1-204ENST00000581226 TLL2Q9Y6L7 1015 aa9.25□□□□□ -0.93
SMCHD1-204ENST00000581226 TTC24A2A3L6 582 aaPredicted RBP9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 PRR20EP86478 221 aa9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 PRR20CP86479 221 aa9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 PRR20DP86480 221 aa9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 PRR20BP86481 221 aa9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 PRR20AP86496 221 aa9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 SEMA3FQ13275 785 aa9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 SNIP1Q8TAD8 396 aaKnown RBP9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 ZNF592Q92610 1267 aa9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 ZNF777Q9ULD5 760 aaPredicted RBP9.24□□□□□ -0.93
SMCHD1-204ENST00000581226 ALDH1A1P00352 501 aa9.23□□□□□ -0.93
SMCHD1-204ENST00000581226 SOX11P35716 441 aa9.23□□□□□ -0.93
SMCHD1-204ENST00000581226 MCCD1P59942 119 aaPredicted RBP9.23□□□□□ -0.93
SMCHD1-204ENST00000581226 VASH1Q7L8A9 365 aaPredicted RBP9.23□□□□□ -0.93
SMCHD1-204ENST00000581226 MPNDQ8N594 471 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms