RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ZNF511Q8NB15 262 aa13.53□□□□□ -0.24
SS18-214ENST00000580003 EPS8L1Q8TE68 723 aa13.53□□□□□ -0.24
SS18-214ENST00000580003 FKBPLQ9UIM3 349 aa13.53□□□□□ -0.24
SS18-214ENST00000580003 GPKOWQ92917 476 aaPredicted RBP eCLIP13.52□□□□□ -0.25
SS18-214ENST00000580003 SH3BP2P78314 561 aa13.51□□□□□ -0.25
SS18-214ENST00000580003 FOXC1Q12948 553 aa13.51□□□□□ -0.25
SS18-214ENST00000580003 FLIIQ13045 1269 aa13.51□□□□□ -0.25
SS18-214ENST00000580003 TRIM34Q9BYJ4 488 aa13.51□□□□□ -0.25
SS18-214ENST00000580003 PRM3Q9NNZ6 103 aa13.51□□□□□ -0.25
SS18-214ENST00000580003 ZC3H4Q9UPT8 1303 aaKnown RBP13.5□□□□□ -0.25
SS18-214ENST00000580003 SKOR1P84550 965 aa13.5□□□□□ -0.25
SS18-214ENST00000580003 AGERQ15109 404 aa13.5□□□□□ -0.25
SS18-214ENST00000580003 GJD4Q96KN9 370 aaPredicted RBP13.5□□□□□ -0.25
SS18-214ENST00000580003 MCM6Q14566 821 aa13.49□□□□□ -0.25
SS18-214ENST00000580003 RC3H1Q5TC82 1133 aaKnown RBP13.49□□□□□ -0.25
SS18-214ENST00000580003 WNT7AO00755 349 aa13.48□□□□□ -0.25
SS18-214ENST00000580003 NDUFB9Q9Y6M9 179 aa13.48□□□□□ -0.25
SS18-214ENST00000580003 BPHLQ86WA6 291 aaPredicted RBP13.47□□□□□ -0.25
SS18-214ENST00000580003 EHBP1Q8NDI1 1231 aa13.47□□□□□ -0.25
SS18-214ENST00000580003 PDXDC2PQ6P474 469 aa13.46□□□□□ -0.25
SS18-214ENST00000580003 TNFRSF10AO00220 468 aa13.45□□□□□ -0.26
SS18-214ENST00000580003 FOXJ1Q92949 421 aa13.45□□□□□ -0.26
SS18-214ENST00000580003 PKD2L1Q9P0L9 805 aa13.45□□□□□ -0.26
SS18-214ENST00000580003 PDZRN3Q9UPQ7 1066 aa13.45□□□□□ -0.26
SS18-214ENST00000580003 GDF9O60383 454 aa13.44□□□□□ -0.26
SS18-214ENST00000580003 VARSP26640 1264 aaKnown RBP13.43□□□□□ -0.26
SS18-214ENST00000580003 PRR20EP86478 221 aa13.43□□□□□ -0.26
SS18-214ENST00000580003 PRR20CP86479 221 aa13.43□□□□□ -0.26
SS18-214ENST00000580003 PRR20DP86480 221 aa13.43□□□□□ -0.26
SS18-214ENST00000580003 PRR20BP86481 221 aa13.43□□□□□ -0.26
SS18-214ENST00000580003 PRR20AP86496 221 aa13.43□□□□□ -0.26
SS18-214ENST00000580003 PTK2Q05397 1052 aa13.43□□□□□ -0.26
SS18-214ENST00000580003 MRGPRX2Q96LB1 330 aa13.43□□□□□ -0.26
SS18-214ENST00000580003 TRIM67Q6ZTA4 783 aa13.42□□□□□ -0.26
SS18-214ENST00000580003 ARHGAP9Q9BRR9 750 aa13.42□□□□□ -0.26
SS18-214ENST00000580003 IRX2Q9BZI1 471 aaPredicted RBP13.42□□□□□ -0.26
SS18-214ENST00000580003 SH3BP5LQ7L8J4 393 aa13.41□□□□□ -0.26
SS18-214ENST00000580003 CYP4X1Q8N118 509 aa13.41□□□□□ -0.26
SS18-214ENST00000580003 GPSM3Q9Y4H4 160 aa13.41□□□□□ -0.26
SS18-214ENST00000580003 MAGEB6P1A0A0J9YX57 407 aa13.4□□□□□ -0.26
SS18-214ENST00000580003 FAM174AQ8TBP5 190 aa13.4□□□□□ -0.26
SS18-214ENST00000580003 TBC1D2BQ9UPU7 963 aa13.4□□□□□ -0.26
SS18-214ENST00000580003 GFRA3O60609 400 aa13.39□□□□□ -0.27
SS18-214ENST00000580003 UBTFP17480 764 aaKnown RBP13.39□□□□□ -0.27
SS18-214ENST00000580003 CARD14Q9BXL6 1004 aa13.39□□□□□ -0.27
SS18-214ENST00000580003 GTF3C3Q9Y5Q9 886 aa13.39□□□□□ -0.27
SS18-214ENST00000580003 TTC24A2A3L6 582 aaPredicted RBP13.38□□□□□ -0.27
SS18-214ENST00000580003 RAD21O60216 631 aa13.38□□□□□ -0.27
SS18-214ENST00000580003 SH3RF1Q7Z6J0 888 aa13.38□□□□□ -0.27
SS18-214ENST00000580003 ZBTB33Q86T24 672 aa13.38□□□□□ -0.27
SS18-214ENST00000580003 LAPTM4AQ15012 233 aa13.37□□□□□ -0.27
SS18-214ENST00000580003 C4orf48Q5BLP8 95 aa13.37□□□□□ -0.27
SS18-214ENST00000580003 SNIP1Q8TAD8 396 aaKnown RBP13.37□□□□□ -0.27
SS18-214ENST00000580003 GDPD2Q9HCC8 539 aa13.37□□□□□ -0.27
SS18-214ENST00000580003 ZBBXA8MT70 800 aa13.35□□□□□ -0.27
SS18-214ENST00000580003 NRG2O14511 850 aaPredicted RBP13.35□□□□□ -0.27
SS18-214ENST00000580003 ABL2P42684 1182 aa13.35□□□□□ -0.27
SS18-214ENST00000580003 SIAH2O43255 324 aa13.34□□□□□ -0.27
SS18-214ENST00000580003 COG6Q9Y2V7 657 aa13.34□□□□□ -0.27
SS18-214ENST00000580003 C1QTNF2Q9BXJ5 285 aa13.33□□□□□ -0.28
SS18-214ENST00000580003 TOR4AQ9NXH8 423 aa13.33□□□□□ -0.28
SS18-214ENST00000580003 GPR37L1O60883 481 aa13.32□□□□□ -0.28
SS18-214ENST00000580003 ERFEQ4G0M1 354 aa13.32□□□□□ -0.28
SS18-214ENST00000580003 ADAM32Q8TC27 787 aa13.32□□□□□ -0.28
SS18-214ENST00000580003 ALDH1A1P00352 501 aa13.31□□□□□ -0.28
SS18-214ENST00000580003 NR1H3Q13133 447 aa13.31□□□□□ -0.28
SS18-214ENST00000580003 ARID5BQ14865 1188 aa13.31□□□□□ -0.28
SS18-214ENST00000580003 WWC1Q8IX03 1113 aa13.31□□□□□ -0.28
SS18-214ENST00000580003 ZNF330Q9Y3S2 320 aaPredicted RBP13.31□□□□□ -0.28
SS18-214ENST00000580003 TLL2Q9Y6L7 1015 aa13.31□□□□□ -0.28
SS18-214ENST00000580003 FBXO45P0C2W1 286 aa13.3□□□□□ -0.28
SS18-214ENST00000580003 TRMT44Q8IYL2 757 aaKnown RBP13.3□□□□□ -0.28
SS18-214ENST00000580003 MPNDQ8N594 471 aa13.3□□□□□ -0.28
SS18-214ENST00000580003 SLC10A4Q96EP9 437 aa13.3□□□□□ -0.28
SS18-214ENST00000580003 POM121Q96HA1 1249 aa13.3□□□□□ -0.28
SS18-214ENST00000580003 OCSTAMPQ9BR26 566 aa13.3□□□□□ -0.28
SS18-214ENST00000580003 WASF2Q9Y6W5 498 aa13.29□□□□□ -0.28
SS18-214ENST00000580003 FAM187AA6NFU0 413 aa13.28□□□□□ -0.28
SS18-214ENST00000580003 J3QL48 77 aa13.27□□□□□ -0.29
SS18-214ENST00000580003 IRF5Q13568 498 aa13.27□□□□□ -0.29
SS18-214ENST00000580003 DZIP3Q86Y13 1208 aaKnown RBP13.27□□□□□ -0.29
SS18-214ENST00000580003 CDV3Q9UKY7 258 aaKnown RBP13.27□□□□□ -0.29
SS18-214ENST00000580003 WASHC4Q2M389 1173 aa13.26□□□□□ -0.29
SS18-214ENST00000580003 PKDCCQ504Y2 493 aa13.26□□□□□ -0.29
SS18-214ENST00000580003 VASH1Q7L8A9 365 aaPredicted RBP13.26□□□□□ -0.29
SS18-214ENST00000580003 CDK15Q96Q40 435 aa13.26□□□□□ -0.29
SS18-214ENST00000580003 PCDHB9Q9Y5E1 797 aa13.26□□□□□ -0.29
SS18-214ENST00000580003 ZNF592Q92610 1267 aa13.25□□□□□ -0.29
SS18-214ENST00000580003 MAP4K5Q9Y4K4 846 aa13.25□□□□□ -0.29
SS18-214ENST00000580003 DGAT1O75907 488 aa13.24□□□□□ -0.29
SS18-214ENST00000580003 SMPD1P17405 629 aa13.24□□□□□ -0.29
SS18-214ENST00000580003 ADH1CP00326 375 aa13.23□□□□□ -0.29
SS18-214ENST00000580003 CLUAP1Q96AJ1 413 aa13.23□□□□□ -0.29
SS18-214ENST00000580003 MCCD1P59942 119 aaPredicted RBP13.22□□□□□ -0.29
SS18-214ENST00000580003 EIF4G2P78344 907 aaKnown RBP eCLIP13.22□□□□□ -0.29
SS18-214ENST00000580003 NBPF20Q3BBV1 942 aa13.22□□□□□ -0.29
SS18-214ENST00000580003 VAC14Q08AM6 782 aa13.21□□□□□ -0.29
SS18-214ENST00000580003 NR5A1Q13285 461 aa13.2□□□□□ -0.3
SS18-214ENST00000580003 Q6ZNB5 142 aa13.2□□□□□ -0.3
SS18-214ENST00000580003 KCTD15Q96SI1 283 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms