RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TRPC5Q9UL62 973 aaPredicted RBP21.11■□□□□ 0.97
SS18-212ENST00000579061 PPIP5K1Q6PFW1 1433 aa21.11■□□□□ 0.97
SS18-212ENST00000579061 BCL9LQ86UU0 1499 aa21.1■□□□□ 0.97
SS18-212ENST00000579061 CABLES1Q8TDN4 633 aa21.1■□□□□ 0.97
SS18-212ENST00000579061 ATRNO75882 1429 aa21.1■□□□□ 0.97
SS18-212ENST00000579061 SLIT2O94813 1529 aa21.09■□□□□ 0.97
SS18-212ENST00000579061 TIMELESSQ9UNS1 1208 aa21.09■□□□□ 0.97
SS18-212ENST00000579061 CRYBG1Q9Y4K1 1723 aa21.09■□□□□ 0.97
SS18-212ENST00000579061 BRD4O60885 1362 aaPredicted RBP21.09■□□□□ 0.97
SS18-212ENST00000579061 PAK3O75914 559 aaPredicted RBP21.08■□□□□ 0.97
SS18-212ENST00000579061 NWD2Q9ULI1 1742 aa21.07■□□□□ 0.96
SS18-212ENST00000579061 UNC5CLQ8IV45 518 aa21.05■□□□□ 0.96
SS18-212ENST00000579061 PLCH1Q4KWH8 1693 aa21.05■□□□□ 0.96
SS18-212ENST00000579061 CABP1Q9NZU7 370 aa21.04■□□□□ 0.96
SS18-212ENST00000579061 ATAD2Q6PL18 1390 aa21.04■□□□□ 0.96
SS18-212ENST00000579061 RGS12O14924 1447 aa21.03■□□□□ 0.96
SS18-212ENST00000579061 PLEKHG5O94827 1062 aa21.02■□□□□ 0.96
SS18-212ENST00000579061 COL14A1Q05707 1796 aaKnown RBP21.02■□□□□ 0.96
SS18-212ENST00000579061 PHRF1Q9P1Y6 1649 aaKnown RBP21.01■□□□□ 0.95
SS18-212ENST00000579061 USP6P35125 1406 aa21.01■□□□□ 0.95
SS18-212ENST00000579061 AKAP12Q02952 1782 aa21■□□□□ 0.95
SS18-212ENST00000579061 FAM83GA6ND36 823 aa21■□□□□ 0.95
SS18-212ENST00000579061 GJD4Q96KN9 370 aaPredicted RBP21■□□□□ 0.95
SS18-212ENST00000579061 SLC24A1O60721 1099 aa20.99■□□□□ 0.95
SS18-212ENST00000579061 ABTB2Q8N961 1025 aa20.99■□□□□ 0.95
SS18-212ENST00000579061 ZNF692Q9BU19 519 aaPredicted RBP20.99■□□□□ 0.95
SS18-212ENST00000579061 PUS7Q96PZ0 661 aaKnown RBP20.98■□□□□ 0.95
SS18-212ENST00000579061 NRAPQ86VF7 1730 aa20.98■□□□□ 0.95
SS18-212ENST00000579061 SSH2Q76I76 1423 aa20.97■□□□□ 0.95
SS18-212ENST00000579061 VPS72Q15906 364 aa20.97■□□□□ 0.95
SS18-212ENST00000579061 NLRP13Q86W25 1043 aa20.97■□□□□ 0.95
SS18-212ENST00000579061 USP19O94966 1318 aa20.97■□□□□ 0.95
SS18-212ENST00000579061 GLI3P10071 1580 aa20.96■□□□□ 0.95
SS18-212ENST00000579061 CPSF1Q10570 1443 aaKnown RBP20.95■□□□□ 0.95
SS18-212ENST00000579061 NUTM2GQ5VZR2 741 aa20.95■□□□□ 0.94
SS18-212ENST00000579061 ST20-MTHFSA0A0A6YYL1 179 aa20.94■□□□□ 0.94
SS18-212ENST00000579061 TESK2Q96S53 571 aa20.94■□□□□ 0.94
SS18-212ENST00000579061 PRDM11Q9NQV5 511 aa20.94■□□□□ 0.94
SS18-212ENST00000579061 NRKQ7Z2Y5 1582 aa20.93■□□□□ 0.94
SS18-212ENST00000579061 BTG4Q9NY30 223 aa20.93■□□□□ 0.94
SS18-212ENST00000579061 KIAA0232Q92628 1395 aa20.93■□□□□ 0.94
SS18-212ENST00000579061 MON2Q7Z3U7 1717 aa20.92■□□□□ 0.94
SS18-212ENST00000579061 CCER1Q8TC90 406 aaPredicted RBP20.92■□□□□ 0.94
SS18-212ENST00000579061 UPF1Q92900 1129 aaKnown RBP eCLIP20.92■□□□□ 0.94
SS18-212ENST00000579061 PIK3C2AO00443 1686 aa20.91■□□□□ 0.94
SS18-212ENST00000579061 CPDO75976 1380 aa20.91■□□□□ 0.94
SS18-212ENST00000579061 TTC21BQ7Z4L5 1316 aa20.91■□□□□ 0.94
SS18-212ENST00000579061 TTC21AQ8NDW8 1320 aa20.91■□□□□ 0.94
SS18-212ENST00000579061 USP47Q96K76 1375 aa20.9■□□□□ 0.94
SS18-212ENST00000579061 SLIT3O75094 1523 aa20.89■□□□□ 0.94
SS18-212ENST00000579061 KTN1Q86UP2 1357 aaKnown RBP20.89■□□□□ 0.93
SS18-212ENST00000579061 GCP02774 474 aa20.89■□□□□ 0.93
SS18-212ENST00000579061 NLRP6P59044 892 aa20.89■□□□□ 0.93
SS18-212ENST00000579061 ZC3H6P61129 1189 aaKnown RBP20.89■□□□□ 0.93
SS18-212ENST00000579061 ONECUT3O60422 494 aaPredicted RBP20.88■□□□□ 0.93
SS18-212ENST00000579061 CCDC9Q9Y3X0 531 aaKnown RBP20.88■□□□□ 0.93
SS18-212ENST00000579061 CD163L1Q9NR16 1453 aa20.88■□□□□ 0.93
SS18-212ENST00000579061 NINLQ9Y2I6 1382 aa20.87■□□□□ 0.93
SS18-212ENST00000579061 CHRNA2Q15822 529 aa20.86■□□□□ 0.93
SS18-212ENST00000579061 HDGFL2Q7Z4V5 671 aaPredicted RBP20.86■□□□□ 0.93
SS18-212ENST00000579061 TMC1Q8TDI8 760 aa20.86■□□□□ 0.93
SS18-212ENST00000579061 LMO7Q8WWI1 1683 aa20.86■□□□□ 0.93
SS18-212ENST00000579061 SLC12A5Q9H2X9 1139 aa20.85■□□□□ 0.93
SS18-212ENST00000579061 TERF2IPQ9NYB0 399 aa20.85■□□□□ 0.93
SS18-212ENST00000579061 BRWD3Q6RI45 1802 aa20.85■□□□□ 0.93
SS18-212ENST00000579061 SPATA31A5Q5VU36 1347 aa20.84■□□□□ 0.93
SS18-212ENST00000579061 SPATA31A7Q8IWB4 1347 aa20.84■□□□□ 0.93
SS18-212ENST00000579061 USP54Q70EL1 1684 aa20.84■□□□□ 0.93
SS18-212ENST00000579061 TMF1P82094 1093 aa20.84■□□□□ 0.93
SS18-212ENST00000579061 SEPT12Q8IYM1 358 aa20.83■□□□□ 0.93
SS18-212ENST00000579061 CAMTA1Q9Y6Y1 1673 aa20.83■□□□□ 0.92
SS18-212ENST00000579061 EDC4Q6P2E9 1401 aaKnown RBP20.82■□□□□ 0.92
SS18-212ENST00000579061 KCNH5Q8NCM2 988 aa20.82■□□□□ 0.92
SS18-212ENST00000579061 USP31Q70CQ4 1352 aa20.82■□□□□ 0.92
SS18-212ENST00000579061 A0A1W2PP64 1363 aa20.81■□□□□ 0.92
SS18-212ENST00000579061 CDCA8Q53HL2 280 aa20.8■□□□□ 0.92
SS18-212ENST00000579061 AATKQ6ZMQ8 1374 aa20.8■□□□□ 0.92
SS18-212ENST00000579061 SPATA31A1Q5TZJ5 1347 aa20.79■□□□□ 0.92
SS18-212ENST00000579061 EVA1CP58658 441 aa20.79■□□□□ 0.92
SS18-212ENST00000579061 STRN4Q9NRL3 753 aa20.79■□□□□ 0.92
SS18-212ENST00000579061 COL18A1P39060 1754 aa20.79■□□□□ 0.92
SS18-212ENST00000579061 EP400Q96L91 3159 aa20.79■□□□□ 0.92
SS18-212ENST00000579061 FAM98CQ17RN3 349 aaKnown RBP20.78■□□□□ 0.92
SS18-212ENST00000579061 THSD7AQ9UPZ6 1657 aa20.77■□□□□ 0.92
SS18-212ENST00000579061 ARHGEF25Q86VW2 580 aa20.77■□□□□ 0.92
SS18-212ENST00000579061 CCDC125Q86Z20 511 aa20.77■□□□□ 0.92
SS18-212ENST00000579061 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.77■□□□□ 0.92
SS18-212ENST00000579061 NFAT5O94916 1531 aa20.77■□□□□ 0.92
SS18-212ENST00000579061 COL5A2P05997 1499 aaPredicted RBP20.76■□□□□ 0.91
SS18-212ENST00000579061 KRT27Q7Z3Y8 459 aa20.76■□□□□ 0.91
SS18-212ENST00000579061 ANKRD36BQ8N2N9 1353 aa20.75■□□□□ 0.91
SS18-212ENST00000579061 NME9Q86XW9 330 aa20.75■□□□□ 0.91
SS18-212ENST00000579061 ABCC6O95255 1503 aa20.74■□□□□ 0.91
SS18-212ENST00000579061 A0A0G2JS52 829 aa20.74■□□□□ 0.91
SS18-212ENST00000579061 MYT1Q01538 1121 aa20.74■□□□□ 0.91
SS18-212ENST00000579061 BARGINQ6ZT62 677 aa20.74■□□□□ 0.91
SS18-212ENST00000579061 LARP1Q6PKG0 1096 aaKnown RBP20.73■□□□□ 0.91
SS18-212ENST00000579061 THRAP3Q9Y2W1 955 aaKnown RBP20.73■□□□□ 0.91
SS18-212ENST00000579061 ZBTB7CA1YPR0 619 aa20.72■□□□□ 0.91
SS18-212ENST00000579061 ZRANB1Q9UGI0 708 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms