RNA–Protein interactions for RNA: ENST00000578896.1

GGA3-207, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 5

Gene GGA3, Length 439 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-207ENST00000578896 STAC3Q96MF2 364 aa12.99□□□□□ -0.33
GGA3-207ENST00000578896 NWD2Q9ULI1 1742 aa12.99□□□□□ -0.33
GGA3-207ENST00000578896 EIF3AQ14152 1382 aaKnown RBP12.98□□□□□ -0.33
GGA3-207ENST00000578896 ZRANB1Q9UGI0 708 aa12.98□□□□□ -0.33
GGA3-207ENST00000578896 ATP7BP35670 1465 aa12.97□□□□□ -0.33
GGA3-207ENST00000578896 ONECUT3O60422 494 aaPredicted RBP12.97□□□□□ -0.33
GGA3-207ENST00000578896 CHRNA2Q15822 529 aa12.97□□□□□ -0.33
GGA3-207ENST00000578896 FAM182BQ5T319 152 aa12.97□□□□□ -0.33
GGA3-207ENST00000578896 KRT27Q7Z3Y8 459 aa12.97□□□□□ -0.33
GGA3-207ENST00000578896 CCDC125Q86Z20 511 aa12.97□□□□□ -0.33
GGA3-207ENST00000578896 ZC3H6P61129 1189 aaKnown RBP12.96□□□□□ -0.33
GGA3-207ENST00000578896 PRDM11Q9NQV5 511 aa12.96□□□□□ -0.33
GGA3-207ENST00000578896 NRAPQ86VF7 1730 aa12.96□□□□□ -0.34
GGA3-207ENST00000578896 ACEP12821 1306 aa12.95□□□□□ -0.34
GGA3-207ENST00000578896 NBPF8Q3BBV2 869 aa12.95□□□□□ -0.34
GGA3-207ENST00000578896 SIN3AQ96ST3 1273 aa12.95□□□□□ -0.34
GGA3-207ENST00000578896 BLMP54132 1417 aaPredicted RBP12.95□□□□□ -0.34
GGA3-207ENST00000578896 CRYBG1Q9Y4K1 1723 aa12.94□□□□□ -0.34
GGA3-207ENST00000578896 CABP2Q9NPB3 220 aa12.94□□□□□ -0.34
GGA3-207ENST00000578896 STRN4Q9NRL3 753 aa12.94□□□□□ -0.34
GGA3-207ENST00000578896 COL14A1Q05707 1796 aaKnown RBP12.94□□□□□ -0.34
GGA3-207ENST00000578896 KIAA0232Q92628 1395 aa12.94□□□□□ -0.34
GGA3-207ENST00000578896 ITSN1Q15811 1721 aa12.93□□□□□ -0.34
GGA3-207ENST00000578896 SRPK2P78362 688 aaKnown RBP12.93□□□□□ -0.34
GGA3-207ENST00000578896 SF3B2Q13435 895 aaKnown RBP12.93□□□□□ -0.34
GGA3-207ENST00000578896 L3MBTL2Q969R5 705 aa12.93□□□□□ -0.34
GGA3-207ENST00000578896 CCDC61Q9Y6R9 512 aa12.93□□□□□ -0.34
GGA3-207ENST00000578896 SPATA31A5Q5VU36 1347 aa12.92□□□□□ -0.34
GGA3-207ENST00000578896 SPATA31A7Q8IWB4 1347 aa12.92□□□□□ -0.34
GGA3-207ENST00000578896 NEUROD1Q13562 356 aa12.92□□□□□ -0.34
GGA3-207ENST00000578896 KIAA1210Q9ULL0 1709 aa12.92□□□□□ -0.34
GGA3-207ENST00000578896 PLEKHG3A1L390 1219 aa12.91□□□□□ -0.34
GGA3-207ENST00000578896 ABTB2Q8N961 1025 aa12.91□□□□□ -0.34
GGA3-207ENST00000578896 USP35Q9P2H5 1018 aa12.91□□□□□ -0.34
GGA3-207ENST00000578896 CENPJQ9HC77 1338 aaPredicted RBP12.9□□□□□ -0.34
GGA3-207ENST00000578896 TOPAZ1Q8N9V7 1692 aa12.9□□□□□ -0.34
GGA3-207ENST00000578896 PHRF1Q9P1Y6 1649 aaKnown RBP12.9□□□□□ -0.34
GGA3-207ENST00000578896 POLR3AO14802 1390 aaPredicted RBP12.9□□□□□ -0.34
GGA3-207ENST00000578896 ZBTB7CA1YPR0 619 aa12.89□□□□□ -0.35
GGA3-207ENST00000578896 PSDA5PKW4 1024 aaPredicted RBP12.89□□□□□ -0.35
GGA3-207ENST00000578896 EN1Q05925 392 aaPredicted RBP12.89□□□□□ -0.35
GGA3-207ENST00000578896 SPATA31A1Q5TZJ5 1347 aa12.88□□□□□ -0.35
GGA3-207ENST00000578896 PPIP5K1Q6PFW1 1433 aa12.88□□□□□ -0.35
GGA3-207ENST00000578896 EVA1CP58658 441 aa12.88□□□□□ -0.35
GGA3-207ENST00000578896 CABP1Q9NZU7 370 aa12.88□□□□□ -0.35
GGA3-207ENST00000578896 LARP1Q6PKG0 1096 aaKnown RBP12.87□□□□□ -0.35
GGA3-207ENST00000578896 QRICH2Q9H0J4 1663 aa12.86□□□□□ -0.35
GGA3-207ENST00000578896 BAG6P46379 1132 aa12.86□□□□□ -0.35
GGA3-207ENST00000578896 CAMTA1Q9Y6Y1 1673 aa12.86□□□□□ -0.35
GGA3-207ENST00000578896 GCP02774 474 aa12.85□□□□□ -0.35
GGA3-207ENST00000578896 THSD7AQ9UPZ6 1657 aa12.85□□□□□ -0.35
GGA3-207ENST00000578896 TRIM37O94972 964 aa12.84□□□□□ -0.35
GGA3-207ENST00000578896 NLRP6P59044 892 aa12.84□□□□□ -0.35
GGA3-207ENST00000578896 NLRP13Q86W25 1043 aa12.84□□□□□ -0.35
GGA3-207ENST00000578896 SSH2Q76I76 1423 aa12.84□□□□□ -0.35
GGA3-207ENST00000578896 NRKQ7Z2Y5 1582 aa12.84□□□□□ -0.35
GGA3-207ENST00000578896 USP19O94966 1318 aa12.84□□□□□ -0.35
GGA3-207ENST00000578896 EZH2Q15910 746 aaKnown RBP12.83□□□□□ -0.36
GGA3-207ENST00000578896 TRPM1Q7Z4N2 1603 aa12.82□□□□□ -0.36
GGA3-207ENST00000578896 SOX12O15370 315 aa12.82□□□□□ -0.36
GGA3-207ENST00000578896 ROCK2O75116 1388 aaKnown RBP12.81□□□□□ -0.36
GGA3-207ENST00000578896 PDE3BQ13370 1112 aa12.81□□□□□ -0.36
GGA3-207ENST00000578896 R3HDM1Q15032 1099 aaKnown RBP12.81□□□□□ -0.36
GGA3-207ENST00000578896 TCP11L2Q8N4U5 519 aa12.81□□□□□ -0.36
GGA3-207ENST00000578896 RGPD1P0DJD0 1748 aa12.81□□□□□ -0.36
GGA3-207ENST00000578896 EVC2Q86UK5 1308 aa12.81□□□□□ -0.36
GGA3-207ENST00000578896 CPDO75976 1380 aa12.81□□□□□ -0.36
GGA3-207ENST00000578896 USP6P35125 1406 aa12.8□□□□□ -0.36
GGA3-207ENST00000578896 APBA3O96018 575 aa12.8□□□□□ -0.36
GGA3-207ENST00000578896 FAM196AQ6ZSG2 479 aa12.8□□□□□ -0.36
GGA3-207ENST00000578896 LMO7Q8WWI1 1683 aa12.8□□□□□ -0.36
GGA3-207ENST00000578896 TNS1Q9HBL0 1735 aaKnown RBP12.79□□□□□ -0.36
GGA3-207ENST00000578896 BARGINQ6ZT62 677 aa12.79□□□□□ -0.36
GGA3-207ENST00000578896 CAMKK2Q96RR4 588 aa12.78□□□□□ -0.36
GGA3-207ENST00000578896 AXIN2Q9Y2T1 843 aa12.78□□□□□ -0.36
GGA3-207ENST00000578896 TTC21BQ7Z4L5 1316 aa12.78□□□□□ -0.36
GGA3-207ENST00000578896 COL5A2P05997 1499 aaPredicted RBP12.78□□□□□ -0.36
GGA3-207ENST00000578896 PIK3C2AO00443 1686 aa12.77□□□□□ -0.37
GGA3-207ENST00000578896 RGPD5Q99666 1765 aa12.76□□□□□ -0.37
GGA3-207ENST00000578896 TOM1L2Q6ZVM7 507 aa12.76□□□□□ -0.37
GGA3-207ENST00000578896 BRD4O60885 1362 aaPredicted RBP12.75□□□□□ -0.37
GGA3-207ENST00000578896 SLIT3O75094 1523 aa12.75□□□□□ -0.37
GGA3-207ENST00000578896 COL18A1P39060 1754 aa12.75□□□□□ -0.37
GGA3-207ENST00000578896 AATKQ6ZMQ8 1374 aa12.75□□□□□ -0.37
GGA3-207ENST00000578896 CARD11Q9BXL7 1154 aa12.75□□□□□ -0.37
GGA3-207ENST00000578896 AKAP12Q02952 1782 aa12.74□□□□□ -0.37
GGA3-207ENST00000578896 DISP2A7MBM2 1401 aa12.74□□□□□ -0.37
GGA3-207ENST00000578896 CRB1P82279 1406 aa12.74□□□□□ -0.37
GGA3-207ENST00000578896 PTF1AQ7RTS3 328 aa12.74□□□□□ -0.37
GGA3-207ENST00000578896 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.74□□□□□ -0.37
GGA3-207ENST00000578896 ZNF692Q9BU19 519 aaPredicted RBP12.74□□□□□ -0.37
GGA3-207ENST00000578896 THRAP3Q9Y2W1 955 aaKnown RBP12.74□□□□□ -0.37
GGA3-207ENST00000578896 KTN1Q86UP2 1357 aaKnown RBP12.73□□□□□ -0.37
GGA3-207ENST00000578896 ARHGEF25Q86VW2 580 aa12.73□□□□□ -0.37
GGA3-207ENST00000578896 TMC1Q8TDI8 760 aa12.73□□□□□ -0.37
GGA3-207ENST00000578896 CSB-PGBD3P0DP91 1061 aa12.72□□□□□ -0.37
GGA3-207ENST00000578896 NME9Q86XW9 330 aa12.72□□□□□ -0.37
GGA3-207ENST00000578896 SLC12A5Q9H2X9 1139 aa12.72□□□□□ -0.37
GGA3-207ENST00000578896 KAT6BQ8WYB5 2073 aa12.72□□□□□ -0.37
GGA3-207ENST00000578896 CPSF1Q10570 1443 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms