RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 NRAPQ86VF7 1730 aa14.5□□□□□ -0.09
SS18-210ENST00000578700 NEUROD1Q13562 356 aa14.5□□□□□ -0.09
SS18-210ENST00000578700 R3HDM1Q15032 1099 aaKnown RBP14.5□□□□□ -0.09
SS18-210ENST00000578700 TRAK1Q9UPV9 953 aa14.5□□□□□ -0.09
SS18-210ENST00000578700 MINK1Q8N4C8 1332 aaPredicted RBP14.48□□□□□ -0.09
SS18-210ENST00000578700 ADRA2BP18089 450 aa14.48□□□□□ -0.09
SS18-210ENST00000578700 NGDNQ8NEJ9 315 aaKnown RBP14.48□□□□□ -0.09
SS18-210ENST00000578700 RGPD1P0DJD0 1748 aa14.48□□□□□ -0.09
SS18-210ENST00000578700 GPRASP1Q5JY77 1395 aa14.47□□□□□ -0.09
SS18-210ENST00000578700 TRPM3Q9HCF6 1732 aaPredicted RBP14.47□□□□□ -0.09
SS18-210ENST00000578700 EZH2Q15910 746 aaKnown RBP14.47□□□□□ -0.09
SS18-210ENST00000578700 KDM2AQ9Y2K7 1162 aa14.47□□□□□ -0.09
SS18-210ENST00000578700 TONSLQ96HA7 1378 aa14.47□□□□□ -0.09
SS18-210ENST00000578700 ALS2Q96Q42 1657 aa14.46□□□□□ -0.09
SS18-210ENST00000578700 PRDM11Q9NQV5 511 aa14.46□□□□□ -0.09
SS18-210ENST00000578700 STRN4Q9NRL3 753 aa14.46□□□□□ -0.09
SS18-210ENST00000578700 COL14A1Q05707 1796 aaKnown RBP14.46□□□□□ -0.09
SS18-210ENST00000578700 ADGRB2O60241 1585 aa14.45□□□□□ -0.1
SS18-210ENST00000578700 TRIM37O94972 964 aa14.45□□□□□ -0.1
SS18-210ENST00000578700 SPATA31A5Q5VU36 1347 aa14.44□□□□□ -0.1
SS18-210ENST00000578700 SPATA31A7Q8IWB4 1347 aa14.44□□□□□ -0.1
SS18-210ENST00000578700 ANKARQ7Z5J8 1434 aa14.44□□□□□ -0.1
SS18-210ENST00000578700 CHRNA2Q15822 529 aa14.44□□□□□ -0.1
SS18-210ENST00000578700 SIN3AQ96ST3 1273 aa14.44□□□□□ -0.1
SS18-210ENST00000578700 USP35Q9P2H5 1018 aa14.44□□□□□ -0.1
SS18-210ENST00000578700 DLC1Q96QB1 1528 aa14.44□□□□□ -0.1
SS18-210ENST00000578700 NUTM2GQ5VZR2 741 aa14.43□□□□□ -0.1
SS18-210ENST00000578700 CRYBG1Q9Y4K1 1723 aa14.43□□□□□ -0.1
SS18-210ENST00000578700 PRR36Q9H6K5 1346 aa14.42□□□□□ -0.1
SS18-210ENST00000578700 TNS1Q9HBL0 1735 aaKnown RBP14.42□□□□□ -0.1
SS18-210ENST00000578700 WASLO00401 505 aaPredicted RBP14.42□□□□□ -0.1
SS18-210ENST00000578700 APBA3O96018 575 aa14.42□□□□□ -0.1
SS18-210ENST00000578700 ZC3H6P61129 1189 aaKnown RBP14.42□□□□□ -0.1
SS18-210ENST00000578700 ZNF316A6NFI3 1004 aaPredicted RBP14.41□□□□□ -0.1
SS18-210ENST00000578700 EVA1CP58658 441 aa14.41□□□□□ -0.1
SS18-210ENST00000578700 THSD7AQ9UPZ6 1657 aa14.41□□□□□ -0.1
SS18-210ENST00000578700 FAM196AQ6ZSG2 479 aa14.4□□□□□ -0.1
SS18-210ENST00000578700 PDE3BQ13370 1112 aa14.39□□□□□ -0.11
SS18-210ENST00000578700 DCAF11Q8TEB1 546 aa14.39□□□□□ -0.11
SS18-210ENST00000578700 CAMKK2Q96RR4 588 aa14.39□□□□□ -0.11
SS18-210ENST00000578700 DISP2A7MBM2 1401 aa14.39□□□□□ -0.11
SS18-210ENST00000578700 SPATA31A1Q5TZJ5 1347 aa14.39□□□□□ -0.11
SS18-210ENST00000578700 KIAA0232Q92628 1395 aa14.38□□□□□ -0.11
SS18-210ENST00000578700 ITSN1Q15811 1721 aa14.38□□□□□ -0.11
SS18-210ENST00000578700 EIF3AQ14152 1382 aaKnown RBP14.37□□□□□ -0.11
SS18-210ENST00000578700 TULP4Q9NRJ4 1543 aa14.37□□□□□ -0.11
SS18-210ENST00000578700 NUDT16Q96DE0 195 aaKnown RBP14.37□□□□□ -0.11
SS18-210ENST00000578700 ADGRB1O14514 1584 aa14.37□□□□□ -0.11
SS18-210ENST00000578700 NBPF8Q3BBV2 869 aa14.35□□□□□ -0.11
SS18-210ENST00000578700 NBPF14Q5TI25 921 aa14.35□□□□□ -0.11
SS18-210ENST00000578700 PHRF1Q9P1Y6 1649 aaKnown RBP14.34□□□□□ -0.11
SS18-210ENST00000578700 YY1P25490 414 aa14.34□□□□□ -0.11
SS18-210ENST00000578700 CDK19Q9BWU1 502 aa14.34□□□□□ -0.11
SS18-210ENST00000578700 PPP1R1BQ9UD71 204 aaPredicted RBP14.34□□□□□ -0.11
SS18-210ENST00000578700 ZBTB7CA1YPR0 619 aa14.33□□□□□ -0.12
SS18-210ENST00000578700 LARP1Q6PKG0 1096 aaKnown RBP14.33□□□□□ -0.12
SS18-210ENST00000578700 RREB1Q92766 1687 aa14.33□□□□□ -0.12
SS18-210ENST00000578700 ABTB2Q8N961 1025 aa14.32□□□□□ -0.12
SS18-210ENST00000578700 ARHGEF28Q8N1W1 1705 aaKnown RBP14.31□□□□□ -0.12
SS18-210ENST00000578700 ACEP12821 1306 aa14.31□□□□□ -0.12
SS18-210ENST00000578700 PARD3Q8TEW0 1356 aa14.31□□□□□ -0.12
SS18-210ENST00000578700 DCAF8L1A6NGE4 600 aa14.3□□□□□ -0.12
SS18-210ENST00000578700 BARGINQ6ZT62 677 aa14.3□□□□□ -0.12
SS18-210ENST00000578700 TCP11L2Q8N4U5 519 aa14.3□□□□□ -0.12
SS18-210ENST00000578700 NUP188Q5SRE5 1749 aa14.29□□□□□ -0.12
SS18-210ENST00000578700 SPON1Q9HCB6 807 aa14.29□□□□□ -0.12
SS18-210ENST00000578700 ATP7BP35670 1465 aa14.29□□□□□ -0.12
SS18-210ENST00000578700 CCDC61Q9Y6R9 512 aa14.28□□□□□ -0.12
SS18-210ENST00000578700 SSH2Q76I76 1423 aa14.27□□□□□ -0.12
SS18-210ENST00000578700 KCNQ2O43526 872 aa14.27□□□□□ -0.13
SS18-210ENST00000578700 TOPAZ1Q8N9V7 1692 aa14.26□□□□□ -0.13
SS18-210ENST00000578700 DIEXFQ68CQ4 756 aaKnown RBP14.26□□□□□ -0.13
SS18-210ENST00000578700 NLRP13Q86W25 1043 aa14.26□□□□□ -0.13
SS18-210ENST00000578700 STAC3Q96MF2 364 aa14.26□□□□□ -0.13
SS18-210ENST00000578700 GCP02774 474 aa14.25□□□□□ -0.13
SS18-210ENST00000578700 SRPK2P78362 688 aaKnown RBP14.25□□□□□ -0.13
SS18-210ENST00000578700 L3MBTL2Q969R5 705 aa14.25□□□□□ -0.13
SS18-210ENST00000578700 THRAP3Q9Y2W1 955 aaKnown RBP14.25□□□□□ -0.13
SS18-210ENST00000578700 LMO7Q8WWI1 1683 aa14.24□□□□□ -0.13
SS18-210ENST00000578700 PLEKHG3A1L390 1219 aa14.24□□□□□ -0.13
SS18-210ENST00000578700 NRKQ7Z2Y5 1582 aa14.24□□□□□ -0.13
SS18-210ENST00000578700 PARP4Q9UKK3 1724 aaKnown RBP14.24□□□□□ -0.13
SS18-210ENST00000578700 CAMTA1Q9Y6Y1 1673 aa14.23□□□□□ -0.13
SS18-210ENST00000578700 POTEDQ86YR6 584 aa14.23□□□□□ -0.13
SS18-210ENST00000578700 CABP2Q9NPB3 220 aa14.23□□□□□ -0.13
SS18-210ENST00000578700 POLR3AO14802 1390 aaPredicted RBP14.22□□□□□ -0.13
SS18-210ENST00000578700 SBF2Q86WG5 1849 aa14.22□□□□□ -0.13
SS18-210ENST00000578700 RGPD3A6NKT7 1758 aaPredicted RBP14.22□□□□□ -0.13
SS18-210ENST00000578700 RGPD4Q7Z3J3 1758 aa14.22□□□□□ -0.13
SS18-210ENST00000578700 UTRNP46939 3433 aa14.22□□□□□ -0.13
SS18-210ENST00000578700 TOM1L2Q6ZVM7 507 aa14.22□□□□□ -0.13
SS18-210ENST00000578700 NLRP6P59044 892 aa14.21□□□□□ -0.13
SS18-210ENST00000578700 DDB1Q16531 1140 aa14.21□□□□□ -0.13
SS18-210ENST00000578700 NBPF1Q3BBV0 1214 aa14.21□□□□□ -0.13
SS18-210ENST00000578700 BCL11BQ9C0K0 894 aaPredicted RBP14.21□□□□□ -0.13
SS18-210ENST00000578700 CPDO75976 1380 aa14.21□□□□□ -0.14
SS18-210ENST00000578700 PTF1AQ7RTS3 328 aa14.2□□□□□ -0.14
SS18-210ENST00000578700 KIAA1210Q9ULL0 1709 aa14.2□□□□□ -0.14
SS18-210ENST00000578700 USP19O94966 1318 aa14.19□□□□□ -0.14
SS18-210ENST00000578700 C11orf95C9JLR9 678 aaPredicted RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms