RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 SYNMO15061 1565 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 FER1L4A9Z1Z3 1794 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 ATP2B2Q01814 1243 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 GGNBP2Q9H3C7 697 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 TFCP2L1Q9NZI6 479 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 RTEL1-TNFRSF6BF6WH68 1400 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 A0A087WZG4 1122 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 GNAI1P63096 354 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 RUFY2Q8WXA3 655 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 JDP2Q8WYK2 163 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 SMARCC1Q92922 1105 aaPredicted RBP3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 FYCO1Q9BQS8 1478 aa3.6□□□□□ -1.83
SMCHD1-203ENST00000577880 YTHDC2Q9H6S0 1430 aaKnown RBP3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 MYO1BO43795 1136 aa3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 IGHMBP2P38935 993 aaKnown RBP3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 TRIM29Q14134 588 aa3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 AMER1Q5JTC6 1135 aaPredicted RBP3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 API5Q9BZZ5 524 aaKnown RBP3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 PANK3Q9H999 370 aa3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 BIN2Q9UBW5 565 aaPredicted RBP3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 RRBP1Q9P2E9 1410 aaKnown RBP3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 SF3A1Q15459 793 aaKnown RBP3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 WASHC4Q2M389 1173 aa3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 DIAPH3Q9NSV4 1193 aa3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 CCDC61Q9Y6R9 512 aa3.59□□□□□ -1.83
SMCHD1-203ENST00000577880 RIPK4P57078 832 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 DDB1Q16531 1140 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 ZNF772Q68DY9 489 aaPredicted RBP3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 MPRIPQ6WCQ1 1025 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 NFXL1Q6ZNB6 911 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 NINLQ9Y2I6 1382 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 WIZO95785 1651 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 C11orf95C9JLR9 678 aaPredicted RBP3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 CPLX1O14810 134 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 HMOX1P09601 288 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 ST5P78524 1137 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 PARP3Q9Y6F1 533 aa3.59□□□□□ -1.84
SMCHD1-203ENST00000577880 ANKRD50Q9ULJ7 1429 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 C6orf229H3BNL8 230 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 TPM4P67936 248 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 IRX6P78412 446 aaPredicted RBP3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 PDE4CQ08493 712 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CFAP70Q5T0N1 1121 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 HSCBQ8IWL3 235 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CCDC146Q8IYE0 955 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 GCC1Q96CN9 775 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 FAM135AQ9P2D6 1515 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 PLA2R1Q13018 1463 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 ZNF644Q9H582 1327 aaPredicted RBP3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 MAP3K9P80192 1104 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CCDC30Q5VVM6 783 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CREBRFQ8IUR6 639 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 TEX13AQ9BXU3 409 aaPredicted RBP3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 HDAC9Q9UKV0 1011 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 MTMR7Q9Y216 660 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 TNRQ92752 1358 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 PTCD1O75127 700 aaKnown RBP3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 PHF14O94880 888 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 SART3Q15020 963 aaKnown RBP3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CCDC57Q2TAC2 916 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 HSP90AB3PQ58FF7 597 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 RALYLQ86SE5 291 aaKnown RBP3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 C19orf44Q9H6X5 657 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 ATAD2Q6PL18 1390 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 URB2Q14146 1524 aaKnown RBP3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 TOPBP1Q92547 1522 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 KIF16BQ96L93 1317 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CFTRP13569 1480 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 MFAP1P55081 439 aaKnown RBP3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CCDC158Q5M9N0 1113 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 B4GALNT3Q6L9W6 998 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 FAM184AQ8NB25 1140 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CLUAP1Q96AJ1 413 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CRBNQ96SW2 442 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 CABP1Q9NZU7 370 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 ANKIB1Q9P2G1 1089 aa3.58□□□□□ -1.84
SMCHD1-203ENST00000577880 TPM2P07951 284 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 RXRBP28702 533 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 ATF7IPQ6VMQ6 1270 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 NOL8Q76FK4 1167 aaKnown RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 SLF2Q8IX21 1173 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 CRACR2BQ8N4Y2 399 aaPredicted RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 OGFOD1Q8N543 542 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 NOC3LQ8WTT2 800 aaKnown RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 RILPL2Q969X0 211 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 NUDT16Q96DE0 195 aaKnown RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 SETD1BQ9UPS6 1966 aaKnown RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 MADDQ8WXG6 1647 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 RNF17Q9BXT8 1623 aaKnown RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 UHRF1BP1Q6BDS2 1440 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 ERC2O15083 957 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 ZKSCAN1P17029 563 aaPredicted RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 CDK13Q14004 1512 aaKnown RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 KIF21BO75037 1637 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 XBP1P17861 261 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 IBSPP21815 317 aaPredicted RBP3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 RFX1P22670 979 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 ARHGEF6Q15052 776 aa3.57□□□□□ -1.84
SMCHD1-203ENST00000577880 SAFBQ15424 915 aaKnown RBP eCLIP3.57□□□□□ -1.846e-7■□□□□ 8.9
SMCHD1-203ENST00000577880 RNF20Q5VTR2 975 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms