RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 NUTM2DQ5VT03 806 aaPredicted RBP11.89□□□□□ -0.51
SMCHD1-202ENST00000577300 NUTM2AQ8IVF1 878 aaPredicted RBP11.89□□□□□ -0.51
SMCHD1-202ENST00000577300 ZNF511Q8NB15 262 aa11.89□□□□□ -0.51
SMCHD1-202ENST00000577300 DACH1Q9UI36 760 aa11.89□□□□□ -0.51
SMCHD1-202ENST00000577300 ALDH1A1P00352 501 aa11.87□□□□□ -0.51
SMCHD1-202ENST00000577300 HPS1Q92902 700 aa11.87□□□□□ -0.51
SMCHD1-202ENST00000577300 KDM4CQ9H3R0 1056 aa11.87□□□□□ -0.51
SMCHD1-202ENST00000577300 PER1O15534 1290 aaPredicted RBP11.86□□□□□ -0.51
SMCHD1-202ENST00000577300 GPBP1L1Q9HC44 474 aaPredicted RBP11.86□□□□□ -0.51
SMCHD1-202ENST00000577300 MAP10Q9P2G4 905 aa11.86□□□□□ -0.51
SMCHD1-202ENST00000577300 VARSP26640 1264 aaKnown RBP11.85□□□□□ -0.51
SMCHD1-202ENST00000577300 RTL5Q5HYW3 569 aaPredicted RBP11.85□□□□□ -0.51
SMCHD1-202ENST00000577300 ZNF775Q96BV0 537 aaPredicted RBP11.85□□□□□ -0.51
SMCHD1-202ENST00000577300 DDRGK1Q96HY6 314 aa11.85□□□□□ -0.51
SMCHD1-202ENST00000577300 POLR3EQ9NVU0 708 aa11.85□□□□□ -0.51
SMCHD1-202ENST00000577300 MPNDQ8N594 471 aa11.84□□□□□ -0.51
SMCHD1-202ENST00000577300 HELBQ8NG08 1087 aaPredicted RBP11.84□□□□□ -0.51
SMCHD1-202ENST00000577300 TSC1Q92574 1164 aa11.84□□□□□ -0.51
SMCHD1-202ENST00000577300 SKIV2LQ15477 1246 aaKnown RBP11.83□□□□□ -0.52
SMCHD1-202ENST00000577300 GMPR2Q9P2T1 348 aaKnown RBP11.83□□□□□ -0.52
SMCHD1-202ENST00000577300 SH3D19Q5HYK7 790 aa11.82□□□□□ -0.52
SMCHD1-202ENST00000577300 WASF2Q9Y6W5 498 aa11.82□□□□□ -0.52
SMCHD1-202ENST00000577300 FAM117AQ9C073 453 aa11.81□□□□□ -0.52
SMCHD1-202ENST00000577300 ATP13A2Q9NQ11 1180 aa11.81□□□□□ -0.52
SMCHD1-202ENST00000577300 PLEKHG3A1L390 1219 aa11.79□□□□□ -0.52
SMCHD1-202ENST00000577300 ARMC2Q8NEN0 867 aa11.78□□□□□ -0.52
SMCHD1-202ENST00000577300 FAM174AQ8TBP5 190 aa11.78□□□□□ -0.52
SMCHD1-202ENST00000577300 TLL2Q9Y6L7 1015 aa11.78□□□□□ -0.52
SMCHD1-202ENST00000577300 C11orf95C9JLR9 678 aaPredicted RBP11.77□□□□□ -0.53
SMCHD1-202ENST00000577300 FOXJ1Q92949 421 aa11.77□□□□□ -0.53
SMCHD1-202ENST00000577300 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.77□□□□□ -0.53
SMCHD1-202ENST00000577300 PPP2R2DQ66LE6 453 aa11.75□□□□□ -0.53
SMCHD1-202ENST00000577300 SENP2Q9HC62 589 aa11.75□□□□□ -0.53
SMCHD1-202ENST00000577300 BPHLQ86WA6 291 aaPredicted RBP11.74□□□□□ -0.53
SMCHD1-202ENST00000577300 PROCA1Q8NCQ7 364 aaPredicted RBP11.74□□□□□ -0.53
SMCHD1-202ENST00000577300 CDK15Q96Q40 435 aa11.74□□□□□ -0.53
SMCHD1-202ENST00000577300 CAPN5O15484 640 aaPredicted RBP11.73□□□□□ -0.53
SMCHD1-202ENST00000577300 CTDSPL2Q05D32 466 aa11.73□□□□□ -0.53
SMCHD1-202ENST00000577300 NBPF14Q5TI25 921 aa11.73□□□□□ -0.53
SMCHD1-202ENST00000577300 TRIM47Q96LD4 638 aa11.73□□□□□ -0.53
SMCHD1-202ENST00000577300 NNTQ13423 1086 aa11.72□□□□□ -0.53
SMCHD1-202ENST00000577300 C4orf48Q5BLP8 95 aa11.72□□□□□ -0.53
SMCHD1-202ENST00000577300 ADH1CP00326 375 aa11.71□□□□□ -0.53
SMCHD1-202ENST00000577300 AGERQ15109 404 aa11.71□□□□□ -0.53
SMCHD1-202ENST00000577300 FBXO31Q5XUX0 539 aaPredicted RBP11.71□□□□□ -0.53
SMCHD1-202ENST00000577300 SH3RF1Q7Z6J0 888 aa11.71□□□□□ -0.53
SMCHD1-202ENST00000577300 GPKOWQ92917 476 aaPredicted RBP eCLIP11.71□□□□□ -0.53
SMCHD1-202ENST00000577300 KIFC2Q96AC6 838 aa11.71□□□□□ -0.53
SMCHD1-202ENST00000577300 SH3BP5LQ7L8J4 393 aa11.69□□□□□ -0.54
SMCHD1-202ENST00000577300 C1QTNF2Q9BXJ5 285 aa11.69□□□□□ -0.54
SMCHD1-202ENST00000577300 SNRPBP14678 240 aaKnown RBP11.68□□□□□ -0.54
SMCHD1-202ENST00000577300 TRIM46Q7Z4K8 759 aa11.67□□□□□ -0.54
SMCHD1-202ENST00000577300 GOPCQ9HD26 462 aa11.67□□□□□ -0.54
SMCHD1-202ENST00000577300 ATP1B4Q9UN42 357 aaPredicted RBP11.67□□□□□ -0.54
SMCHD1-202ENST00000577300 NR5A1Q13285 461 aa11.66□□□□□ -0.54
SMCHD1-202ENST00000577300 ARID5BQ14865 1188 aa11.66□□□□□ -0.54
SMCHD1-202ENST00000577300 TREML4Q6UXN2 200 aa11.66□□□□□ -0.54
SMCHD1-202ENST00000577300 LRRN4Q8WUT4 740 aa11.66□□□□□ -0.54
SMCHD1-202ENST00000577300 KLF16Q9BXK1 252 aaPredicted RBP11.66□□□□□ -0.54
SMCHD1-202ENST00000577300 BMP1P13497 986 aa11.65□□□□□ -0.54
SMCHD1-202ENST00000577300 TIMP2P16035 220 aa11.65□□□□□ -0.54
SMCHD1-202ENST00000577300 LCE2AQ5TA79 106 aaPredicted RBP11.65□□□□□ -0.54
SMCHD1-202ENST00000577300 TRMT44Q8IYL2 757 aaKnown RBP11.65□□□□□ -0.54
SMCHD1-202ENST00000577300 GRM5P41594 1212 aa11.64□□□□□ -0.55
SMCHD1-202ENST00000577300 WDR4P57081 412 aaKnown RBP11.64□□□□□ -0.55
SMCHD1-202ENST00000577300 MAP4K5Q9Y4K4 846 aa11.64□□□□□ -0.55
SMCHD1-202ENST00000577300 NEUROD2Q15784 382 aa11.63□□□□□ -0.55
SMCHD1-202ENST00000577300 PDXDC2PQ6P474 469 aa11.63□□□□□ -0.55
SMCHD1-202ENST00000577300 FKBPLQ9UIM3 349 aa11.63□□□□□ -0.55
SMCHD1-202ENST00000577300 ZC3H4Q9UPT8 1303 aaKnown RBP11.62□□□□□ -0.55
SMCHD1-202ENST00000577300 AP1G2O75843 785 aa11.62□□□□□ -0.55
SMCHD1-202ENST00000577300 MAGEB6P1A0A0J9YX57 407 aa11.61□□□□□ -0.55
SMCHD1-202ENST00000577300 NR6A1Q15406 480 aa11.61□□□□□ -0.55
SMCHD1-202ENST00000577300 NR3C2P08235 984 aa11.6□□□□□ -0.55
SMCHD1-202ENST00000577300 RFC5P40937 340 aa11.59□□□□□ -0.55
SMCHD1-202ENST00000577300 NFX1Q12986 1120 aaKnown RBP11.59□□□□□ -0.55
SMCHD1-202ENST00000577300 ERFEQ4G0M1 354 aa11.59□□□□□ -0.55
SMCHD1-202ENST00000577300 MRPL14Q6P1L8 145 aaKnown RBP11.59□□□□□ -0.55
SMCHD1-202ENST00000577300 PCMTD1Q96MG8 357 aaPredicted RBP11.59□□□□□ -0.55
SMCHD1-202ENST00000577300 WFS1O76024 890 aa11.58□□□□□ -0.56
SMCHD1-202ENST00000577300 ZIC2O95409 532 aaPredicted RBP11.58□□□□□ -0.56
SMCHD1-202ENST00000577300 USP17L8P0C7I0 530 aa11.58□□□□□ -0.56
SMCHD1-202ENST00000577300 VASH1Q7L8A9 365 aaPredicted RBP11.58□□□□□ -0.56
SMCHD1-202ENST00000577300 ZFP42Q96MM3 310 aa11.58□□□□□ -0.56
SMCHD1-202ENST00000577300 ARHGAP9Q9BRR9 750 aa11.58□□□□□ -0.56
SMCHD1-202ENST00000577300 CARD14Q9BXL6 1004 aa11.58□□□□□ -0.56
SMCHD1-202ENST00000577300 ITPKCQ96DU7 683 aa11.57□□□□□ -0.56
SMCHD1-202ENST00000577300 FSHRP23945 695 aa11.56□□□□□ -0.56
SMCHD1-202ENST00000577300 BRPF1P55201 1214 aaPredicted RBP11.56□□□□□ -0.56
SMCHD1-202ENST00000577300 SCARF1Q14162 830 aa11.56□□□□□ -0.56
SMCHD1-202ENST00000577300 ZFAND3Q9H8U3 227 aa11.56□□□□□ -0.56
SMCHD1-202ENST00000577300 GPSM3Q9Y4H4 160 aa11.56□□□□□ -0.56
SMCHD1-202ENST00000577300 TERTO14746 1132 aaKnown RBP11.55□□□□□ -0.56
SMCHD1-202ENST00000577300 IL27Q8NEV9 243 aa11.55□□□□□ -0.56
SMCHD1-202ENST00000577300 PNMA1Q8ND90 353 aa11.54□□□□□ -0.56
SMCHD1-202ENST00000577300 HMX1Q9NP08 348 aaPredicted RBP11.54□□□□□ -0.56
SMCHD1-202ENST00000577300 CDV3Q9UKY7 258 aaKnown RBP11.54□□□□□ -0.56
SMCHD1-202ENST00000577300 PTK2Q05397 1052 aa11.53□□□□□ -0.56
SMCHD1-202ENST00000577300 TMEM259Q4ZIN3 620 aa11.53□□□□□ -0.56
SMCHD1-202ENST00000577300 EPS8L1Q8TE68 723 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms