RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	AEBP1	Q8IUX7	1158 aa		18.66	■□□□□ 0.58
PRPF8-216	ENST00000577001	TERF2IP	Q9NYB0	399 aa		18.66	■□□□□ 0.58
PRPF8-216	ENST00000577001	ARAP3	Q8WWN8	1544 aa		18.66	■□□□□ 0.58
PRPF8-216	ENST00000577001	CD2BP2	O95400	341 aa	Known RBP	18.66	■□□□□ 0.58
PRPF8-216	ENST00000577001	HSP90AB1	P08238	724 aa	Known RBP	18.65	■□□□□ 0.58
PRPF8-216	ENST00000577001	TSHZ3	Q63HK5	1081 aa		18.65	■□□□□ 0.58
PRPF8-216	ENST00000577001	NCL	P19338	710 aa	Known RBP	18.64	■□□□□ 0.58
PRPF8-216	ENST00000577001	KDM5A	P29375	1690 aa	Known RBP	18.64	■□□□□ 0.57
PRPF8-216	ENST00000577001	SLC4A10	Q6U841	1118 aa		18.64	■□□□□ 0.57
PRPF8-216	ENST00000577001	MCM10	Q7L590	875 aa		18.64	■□□□□ 0.57
PRPF8-216	ENST00000577001	C8orf58	Q8NAV2	365 aa		18.64	■□□□□ 0.57
PRPF8-216	ENST00000577001	OTUD7A	Q8TE49	926 aa	Predicted RBP	18.64	■□□□□ 0.57
PRPF8-216	ENST00000577001	PLEKHF1	Q96S99	279 aa		18.64	■□□□□ 0.57
PRPF8-216	ENST00000577001	SPHKAP	Q2M3C7	1700 aa		18.63	■□□□□ 0.57
PRPF8-216	ENST00000577001	HSCB	Q8IWL3	235 aa		18.63	■□□□□ 0.57
PRPF8-216	ENST00000577001	IQGAP1	P46940	1657 aa		18.63	■□□□□ 0.57
PRPF8-216	ENST00000577001	MYOM1	P52179	1685 aa		18.63	■□□□□ 0.57
PRPF8-216	ENST00000577001	DDX19B	Q9UMR2	479 aa		18.62	■□□□□ 0.57
PRPF8-216	ENST00000577001	RBM33	Q96EV2	1170 aa	Known RBP	18.62	■□□□□ 0.57
PRPF8-216	ENST00000577001	POLK	Q9UBT6	870 aa		18.62	■□□□□ 0.57
PRPF8-216	ENST00000577001	RRAGD	Q9NQL2	400 aa	Predicted RBP	18.61	■□□□□ 0.57
PRPF8-216	ENST00000577001	LTV1	Q96GA3	475 aa	Predicted RBP	18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	RNF17	Q9BXT8	1623 aa	Known RBP	18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	NPC1L1	Q9UHC9	1359 aa		18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	RTEL1-TNFRSF6B	F6WH68	1400 aa		18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	STAC3	Q96MF2	364 aa		18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	ANTXR1	Q9H6X2	564 aa		18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	MROH2A	A6NES4	1674 aa		18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	ZNF518A	Q6AHZ1	1483 aa		18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	MCM4	P33991	863 aa		18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	MBIP	Q9NS73	344 aa		18.59	■□□□□ 0.57
PRPF8-216	ENST00000577001	TRAK2	O60296	914 aa		18.58	■□□□□ 0.57
PRPF8-216	ENST00000577001	FAM69C	Q0P6D2	419 aa		18.58	■□□□□ 0.56
PRPF8-216	ENST00000577001	CHD1L	Q86WJ1	897 aa		18.58	■□□□□ 0.56
PRPF8-216	ENST00000577001	ZBTB40	Q9NUA8	1239 aa		18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001	MAP3K4	Q9Y6R4	1608 aa		18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001		F6X3S4	739 aa		18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001	FOXO3	O43524	673 aa		18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001	XRCC6	P12956	609 aa	Known RBP eCLIP	18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001	C14orf37	Q86TY3	774 aa		18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001	ANKRD36B	Q8N2N9	1353 aa		18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001	YEATS2	Q9ULM3	1422 aa		18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001	CEP152	O94986	1710 aa		18.57	■□□□□ 0.56
PRPF8-216	ENST00000577001	TWISTNB	Q3B726	338 aa	Predicted RBP	18.56	■□□□□ 0.56
PRPF8-216	ENST00000577001	PHF23	Q9BUL5	403 aa	Predicted RBP	18.56	■□□□□ 0.56
PRPF8-216	ENST00000577001	SULT6B1	Q6IMI4	303 aa		18.56	■□□□□ 0.56
PRPF8-216	ENST00000577001	GOLGA6L3	A6NEY3	463 aa		18.55	■□□□□ 0.56
PRPF8-216	ENST00000577001	IPO8	O15397	1037 aa	Known RBP	18.54	■□□□□ 0.56
PRPF8-216	ENST00000577001	INO80	Q9ULG1	1556 aa	Predicted RBP	18.54	■□□□□ 0.56
PRPF8-216	ENST00000577001	PPRC1	Q5VV67	1664 aa	Known RBP	18.54	■□□□□ 0.56
PRPF8-216	ENST00000577001	SIRT2	Q8IXJ6	389 aa		18.54	■□□□□ 0.56
PRPF8-216	ENST00000577001	NAP1L5	Q96NT1	182 aa	Predicted RBP	18.54	■□□□□ 0.56
PRPF8-216	ENST00000577001	SLC26A8	Q96RN1	970 aa		18.54	■□□□□ 0.56
PRPF8-216	ENST00000577001	VAMP4	O75379	141 aa		18.53	■□□□□ 0.56
PRPF8-216	ENST00000577001	MPND	Q8N594	471 aa		18.52	■□□□□ 0.56
PRPF8-216	ENST00000577001	SSFA2	P28290	1259 aa		18.52	■□□□□ 0.55
PRPF8-216	ENST00000577001	TBC1D9	Q6ZT07	1266 aa		18.52	■□□□□ 0.55
PRPF8-216	ENST00000577001	RSPH6A	Q9H0K4	717 aa		18.52	■□□□□ 0.55
PRPF8-216	ENST00000577001	LAMC1	P11047	1609 aa		18.51	■□□□□ 0.55
PRPF8-216	ENST00000577001	ESF1	Q9H501	851 aa	Known RBP	18.51	■□□□□ 0.55
PRPF8-216	ENST00000577001	CEBPA	P49715	358 aa	Predicted RBP	18.5	■□□□□ 0.55
PRPF8-216	ENST00000577001	TET3	O43151	1660 aa		18.5	■□□□□ 0.55
PRPF8-216	ENST00000577001	HSP90AB2P	Q58FF8	381 aa		18.5	■□□□□ 0.55
PRPF8-216	ENST00000577001	TNPO1	Q92973	898 aa	Known RBP	18.5	■□□□□ 0.55
PRPF8-216	ENST00000577001	CHMP5	Q9NZZ3	219 aa		18.5	■□□□□ 0.55
PRPF8-216	ENST00000577001	ZBTB7B	O15156	539 aa	Predicted RBP	18.49	■□□□□ 0.55
PRPF8-216	ENST00000577001	PKP1	Q13835	747 aa		18.49	■□□□□ 0.55
PRPF8-216	ENST00000577001	CCDC27	Q2M243	656 aa		18.49	■□□□□ 0.55
PRPF8-216	ENST00000577001	ARID3A	Q99856	593 aa		18.49	■□□□□ 0.55
PRPF8-216	ENST00000577001	TULP4	Q9NRJ4	1543 aa		18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	LARP6	Q9BRS8	491 aa	Known RBP	18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	NUCB1	Q02818	461 aa		18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	NFE2L2	Q16236	605 aa		18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	GAS2L2	Q8NHY3	880 aa		18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	SMC5	Q8IY18	1101 aa		18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	MRPL50	Q8N5N7	158 aa	Known RBP	18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	COG3	Q96JB2	828 aa		18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	KIF1B	O60333	1816 aa		18.48	■□□□□ 0.55
PRPF8-216	ENST00000577001	KIDINS220	Q9ULH0	1771 aa		18.47	■□□□□ 0.55
PRPF8-216	ENST00000577001	EFCAB6	Q5THR3	1501 aa		18.47	■□□□□ 0.55
PRPF8-216	ENST00000577001	NGEF	Q8N5V2	710 aa		18.47	■□□□□ 0.55
PRPF8-216	ENST00000577001	NUDT16	Q96DE0	195 aa	Known RBP	18.47	■□□□□ 0.55
PRPF8-216	ENST00000577001	MAP4K4	O95819	1239 aa	Predicted RBP	18.47	■□□□□ 0.55
PRPF8-216	ENST00000577001	GAS2L3	Q86XJ1	694 aa		18.47	■□□□□ 0.55
PRPF8-216	ENST00000577001	NLRP1	Q9C000	1473 aa		18.47	■□□□□ 0.55
PRPF8-216	ENST00000577001	MROH1	Q8NDA8	1641 aa		18.46	■□□□□ 0.55
PRPF8-216	ENST00000577001	KIF16B	Q96L93	1317 aa		18.46	■□□□□ 0.55
PRPF8-216	ENST00000577001	MEIS3	Q99687	375 aa		18.46	■□□□□ 0.55
PRPF8-216	ENST00000577001	G2E3	Q7L622	706 aa		18.45	■□□□□ 0.54
PRPF8-216	ENST00000577001	FCHSD2	O94868	740 aa		18.45	■□□□□ 0.54
PRPF8-216	ENST00000577001	PRKCSH	P14314	528 aa	Predicted RBP	18.45	■□□□□ 0.54
PRPF8-216	ENST00000577001	HDAC1	Q13547	482 aa	Predicted RBP	18.45	■□□□□ 0.54
PRPF8-216	ENST00000577001	EXOC6B	Q9Y2D4	811 aa		18.45	■□□□□ 0.54
PRPF8-216	ENST00000577001	DEPDC5	O75140	1603 aa		18.45	■□□□□ 0.54
PRPF8-216	ENST00000577001	QRICH2	Q9H0J4	1663 aa		18.44	■□□□□ 0.54
PRPF8-216	ENST00000577001	MYOM2	P54296	1465 aa		18.44	■□□□□ 0.54
PRPF8-216	ENST00000577001	SLC4A2	P04920	1241 aa		18.44	■□□□□ 0.54
PRPF8-216	ENST00000577001	GSPT1	P15170	499 aa	Known RBP	18.43	■□□□□ 0.54
PRPF8-216	ENST00000577001	RPGRIP1L	Q68CZ1	1315 aa		18.43	■□□□□ 0.54
PRPF8-216	ENST00000577001	USHBP1	Q8N6Y0	703 aa		18.43	■□□□□ 0.54

Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms