RNA–Protein interactions for RNA: ENST00000575909.1

TOM1L1-222, Transcript of target of myb1 like 1 membrane trafficking protein, human

TSL 3

Gene TOM1L1, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1L1-222	ENST00000575909	UCN2	Q96RP3	112 aa		11.27	□□□□□ -0.61
TOM1L1-222	ENST00000575909	MAP10	Q9P2G4	905 aa		11.27	□□□□□ -0.61
TOM1L1-222	ENST00000575909	TFIP11	Q9UBB9	837 aa	Known RBP	11.27	□□□□□ -0.61
TOM1L1-222	ENST00000575909	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	11.26	□□□□□ -0.61
TOM1L1-222	ENST00000575909	DXO	O77932	396 aa	Known RBP	11.26	□□□□□ -0.61
TOM1L1-222	ENST00000575909	FBXO45	P0C2W1	286 aa		11.26	□□□□□ -0.61
TOM1L1-222	ENST00000575909	CTH	P32929	405 aa		11.26	□□□□□ -0.61
TOM1L1-222	ENST00000575909	THSD4	Q6ZMP0	1018 aa		11.26	□□□□□ -0.61
TOM1L1-222	ENST00000575909	EVA1B	Q9NVM1	165 aa		11.26	□□□□□ -0.61
TOM1L1-222	ENST00000575909	CCNYL3	P0C7X3	344 aa		11.25	□□□□□ -0.61
TOM1L1-222	ENST00000575909	LMOD1	P29536	600 aa	Predicted RBP	11.25	□□□□□ -0.61
TOM1L1-222	ENST00000575909	FAM160A2	Q8N612	972 aa	Predicted RBP	11.25	□□□□□ -0.61
TOM1L1-222	ENST00000575909	ARMC2	Q8NEN0	867 aa		11.25	□□□□□ -0.61
TOM1L1-222	ENST00000575909	MMP16	P51512	607 aa		11.24	□□□□□ -0.61
TOM1L1-222	ENST00000575909	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.24	□□□□□ -0.61
TOM1L1-222	ENST00000575909	GPSM3	Q9Y4H4	160 aa		11.24	□□□□□ -0.61
TOM1L1-222	ENST00000575909	COPS2	P61201	443 aa		11.23	□□□□□ -0.61
TOM1L1-222	ENST00000575909	ZNF592	Q92610	1267 aa		11.23	□□□□□ -0.61
TOM1L1-222	ENST00000575909	NUDT12	Q9BQG2	462 aa		11.23	□□□□□ -0.61
TOM1L1-222	ENST00000575909	ATP9B	O43861	1147 aa		11.22	□□□□□ -0.61
TOM1L1-222	ENST00000575909	KCNH2	Q12809	1159 aa		11.22	□□□□□ -0.61
TOM1L1-222	ENST00000575909	UST	Q9Y2C2	406 aa		11.22	□□□□□ -0.61
TOM1L1-222	ENST00000575909	MAFB	Q9Y5Q3	323 aa	Predicted RBP	11.22	□□□□□ -0.61
TOM1L1-222	ENST00000575909	CSB-PGBD3	P0DP91	1061 aa		11.21	□□□□□ -0.61
TOM1L1-222	ENST00000575909	PTK2	Q05397	1052 aa		11.21	□□□□□ -0.61
TOM1L1-222	ENST00000575909	KRTAP3-3	Q9BYR6	98 aa		11.21	□□□□□ -0.61
TOM1L1-222	ENST00000575909	KRTAP3-2	Q9BYR7	98 aa		11.21	□□□□□ -0.61
TOM1L1-222	ENST00000575909	PDXDC2P	Q6P474	469 aa		11.2	□□□□□ -0.62
TOM1L1-222	ENST00000575909	TBC1D9	Q6ZT07	1266 aa		11.2	□□□□□ -0.62
TOM1L1-222	ENST00000575909	AEBP1	Q8IUX7	1158 aa		11.2	□□□□□ -0.62
TOM1L1-222	ENST00000575909	NFATC2IP	Q8NCF5	419 aa		11.2	□□□□□ -0.62
TOM1L1-222	ENST00000575909	ZPR1	O75312	459 aa		11.19	□□□□□ -0.62
TOM1L1-222	ENST00000575909	ADH1B	P00325	375 aa		11.19	□□□□□ -0.62
TOM1L1-222	ENST00000575909	MCCD1	P59942	119 aa	Predicted RBP	11.19	□□□□□ -0.62
TOM1L1-222	ENST00000575909	NBPF14	Q5TI25	921 aa		11.19	□□□□□ -0.62
TOM1L1-222	ENST00000575909	KCTD12	Q96CX2	325 aa	Known RBP	11.19	□□□□□ -0.62
TOM1L1-222	ENST00000575909	PRDM9	Q9NQV7	894 aa		11.18	□□□□□ -0.62
TOM1L1-222	ENST00000575909	ATG7	O95352	703 aa		11.17	□□□□□ -0.62
TOM1L1-222	ENST00000575909	MTR	Q99707	1265 aa		11.16	□□□□□ -0.62
TOM1L1-222	ENST00000575909	PATL2	C9JE40	543 aa	Known RBP	11.15	□□□□□ -0.62
TOM1L1-222	ENST00000575909	VRTN	Q9H8Y1	702 aa		11.15	□□□□□ -0.62
TOM1L1-222	ENST00000575909	CCDC9	Q9Y3X0	531 aa	Known RBP	11.15	□□□□□ -0.62
TOM1L1-222	ENST00000575909	TLL1	O43897	1013 aa		11.14	□□□□□ -0.63
TOM1L1-222	ENST00000575909	MYT1L	Q9UL68	1186 aa		11.14	□□□□□ -0.63
TOM1L1-222	ENST00000575909	IL21	Q9HBE4	155 aa		11.13	□□□□□ -0.63
TOM1L1-222	ENST00000575909	PIK3CD	O00329	1044 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	BRD1	O95696	1058 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	SKI	P12755	728 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	CDCA8	Q53HL2	280 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	TJAP1	Q5JTD0	557 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	PLEKHM2	Q8IWE5	1019 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	OCSTAMP	Q9BR26	566 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	SLC6A16	Q9GZN6	736 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	UNC93B1	Q9H1C4	597 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	CEP126	Q9P2H0	1117 aa		11.12	□□□□□ -0.63
TOM1L1-222	ENST00000575909	KANK4	Q5T7N3	995 aa	Predicted RBP	11.11	□□□□□ -0.63
TOM1L1-222	ENST00000575909	CCDC24	Q8N4L8	307 aa		11.11	□□□□□ -0.63
TOM1L1-222	ENST00000575909	ARHGAP9	Q9BRR9	750 aa		11.11	□□□□□ -0.63
TOM1L1-222	ENST00000575909	USP17L3	A6NCW0	530 aa		11.1	□□□□□ -0.63
TOM1L1-222	ENST00000575909	USP17L4	A6NCW7	530 aa		11.1	□□□□□ -0.63
TOM1L1-222	ENST00000575909	POTEM	A6NI47	508 aa		11.1	□□□□□ -0.63
TOM1L1-222	ENST00000575909	SLFNL1	Q499Z3	407 aa		11.1	□□□□□ -0.63
TOM1L1-222	ENST00000575909	USP17L2	Q6R6M4	530 aa		11.1	□□□□□ -0.63
TOM1L1-222	ENST00000575909	USP17L1	Q7RTZ2	530 aa		11.1	□□□□□ -0.63
TOM1L1-222	ENST00000575909	PCDHB9	Q9Y5E1	797 aa		11.1	□□□□□ -0.63
TOM1L1-222	ENST00000575909	USP17L5	A8MUK1	530 aa		11.09	□□□□□ -0.63
TOM1L1-222	ENST00000575909	PTPN5	P54829	565 aa		11.09	□□□□□ -0.63
TOM1L1-222	ENST00000575909	KCNA1	Q09470	495 aa		11.09	□□□□□ -0.63
TOM1L1-222	ENST00000575909	ELOA	Q14241	798 aa	Known RBP	11.09	□□□□□ -0.63
TOM1L1-222	ENST00000575909	ADAM32	Q8TC27	787 aa		11.09	□□□□□ -0.63
TOM1L1-222	ENST00000575909	PTCRA	Q6ISU1	281 aa	Predicted RBP	11.08	□□□□□ -0.64
TOM1L1-222	ENST00000575909	SH3BP5L	Q7L8J4	393 aa		11.08	□□□□□ -0.64
TOM1L1-222	ENST00000575909	ZBTB33	Q86T24	672 aa		11.08	□□□□□ -0.64
TOM1L1-222	ENST00000575909	FAM174A	Q8TBP5	190 aa		11.08	□□□□□ -0.64
TOM1L1-222	ENST00000575909	ZNF516	Q92618	1163 aa		11.08	□□□□□ -0.64
TOM1L1-222	ENST00000575909	TMEM88B	A6NKF7	163 aa		11.07	□□□□□ -0.64
TOM1L1-222	ENST00000575909	LZTS3	O60299	673 aa	Predicted RBP	11.07	□□□□□ -0.64
TOM1L1-222	ENST00000575909	PHTF2	Q8N3S3	785 aa		11.07	□□□□□ -0.64
TOM1L1-222	ENST00000575909	RNF135	Q8IUD6	432 aa		11.06	□□□□□ -0.64
TOM1L1-222	ENST00000575909	MAP7D1	Q3KQU3	841 aa		11.05	□□□□□ -0.64
TOM1L1-222	ENST00000575909	POTEG	Q6S5H5	508 aa		11.05	□□□□□ -0.64
TOM1L1-222	ENST00000575909	SH3RF1	Q7Z6J0	888 aa		11.04	□□□□□ -0.64
TOM1L1-222	ENST00000575909	DZIP3	Q86Y13	1208 aa	Known RBP	11.04	□□□□□ -0.64
TOM1L1-222	ENST00000575909	PLPP7	Q8NBV4	271 aa		11.04	□□□□□ -0.64
TOM1L1-222	ENST00000575909	CHIC2	Q9UKJ5	165 aa		11.04	□□□□□ -0.64
TOM1L1-222	ENST00000575909	CARNS1	A5YM72	827 aa		11.03	□□□□□ -0.64
TOM1L1-222	ENST00000575909	FAM196B	A6NMK8	535 aa		11.03	□□□□□ -0.64
TOM1L1-222	ENST00000575909	BPHL	Q86WA6	291 aa	Predicted RBP	11.03	□□□□□ -0.64
TOM1L1-222	ENST00000575909	DEPDC4	Q8N2C3	294 aa		11.03	□□□□□ -0.64
TOM1L1-222	ENST00000575909	GZF1	Q9H116	711 aa	Predicted RBP	11.03	□□□□□ -0.64
TOM1L1-222	ENST00000575909	MKRN1	Q9UHC7	482 aa	Known RBP	11.03	□□□□□ -0.64
TOM1L1-222	ENST00000575909	ATP5J2-PTCD1	G3V325	749 aa		11.02	□□□□□ -0.65
TOM1L1-222	ENST00000575909	NCOA4	Q13772	614 aa		11.02	□□□□□ -0.65
TOM1L1-222	ENST00000575909	BAP1	Q92560	729 aa		11.02	□□□□□ -0.65
TOM1L1-222	ENST00000575909	S1PR4	O95977	384 aa		11.01	□□□□□ -0.65
TOM1L1-222	ENST00000575909	B4GALNT3	Q6L9W6	998 aa		11.01	□□□□□ -0.65
TOM1L1-222	ENST00000575909	LARP1	Q6PKG0	1096 aa	Known RBP	11.01	□□□□□ -0.65
TOM1L1-222	ENST00000575909	NOVA2	Q9UNW9	492 aa	Known RBP	11.01	□□□□□ -0.65
TOM1L1-222	ENST00000575909	MAGEB6P1	A0A0J9YX57	407 aa		11	□□□□□ -0.65
TOM1L1-222	ENST00000575909	AGER	Q15109	404 aa		11	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms