RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 DUSP27Q5VZP5 1158 aa8.87□□□□□ -0.99
SMG6-217ENST00000575338 WAPLQ7Z5K2 1190 aa8.87□□□□□ -0.99
SMG6-217ENST00000575338 TRMT2AQ8IZ69 625 aaKnown RBP8.87□□□□□ -0.99
SMG6-217ENST00000575338 NUDT16Q96DE0 195 aaKnown RBP8.87□□□□□ -0.99
SMG6-217ENST00000575338 COL3A1P02461 1466 aaPredicted RBP8.87□□□□□ -0.99
SMG6-217ENST00000575338 CDK12Q9NYV4 1490 aaPredicted RBP8.87□□□□□ -0.99
SMG6-217ENST00000575338 NALCNQ8IZF0 1738 aa8.86□□□□□ -0.99
SMG6-217ENST00000575338 DIAPH1O60610 1272 aaKnown RBP8.86□□□□□ -0.99
SMG6-217ENST00000575338 U2AF1L5P0DN76 240 aaPredicted RBP8.86□□□□□ -0.99
SMG6-217ENST00000575338 U2AF1Q01081 240 aaKnown RBP eCLIP8.86□□□□□ -0.99
SMG6-217ENST00000575338 AAMPQ13685 434 aa8.86□□□□□ -0.99
SMG6-217ENST00000575338 CCDC146Q8IYE0 955 aa8.86□□□□□ -0.99
SMG6-217ENST00000575338 CDCA7LQ96GN5 454 aa8.86□□□□□ -0.99
SMG6-217ENST00000575338 COG3Q96JB2 828 aa8.86□□□□□ -0.99
SMG6-217ENST00000575338 GGNBP2Q9H3C7 697 aa8.86□□□□□ -0.99
SMG6-217ENST00000575338 MYH16Q9H6N6 1097 aa8.86□□□□□ -0.99
SMG6-217ENST00000575338 PNPLA6Q8IY17 1366 aa8.86□□□□□ -0.99
SMG6-217ENST00000575338 CALD1Q05682 793 aaKnown RBP8.85□□□□□ -0.99
SMG6-217ENST00000575338 WWC1Q8IX03 1113 aa8.85□□□□□ -0.99
SMG6-217ENST00000575338 TSHZ2Q9NRE2 1034 aa8.85□□□□□ -0.99
SMG6-217ENST00000575338 ANKARQ7Z5J8 1434 aa8.85□□□□□ -0.99
SMG6-217ENST00000575338 FMN2Q9NZ56 1722 aa8.85□□□□□ -0.99
SMG6-217ENST00000575338 ROBO2Q9HCK4 1378 aa8.85□□□□□ -0.99
SMG6-217ENST00000575338 LRRC7Q96NW7 1537 aa8.85□□□□□ -0.99
SMG6-217ENST00000575338 TTC21AQ8NDW8 1320 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 KDM4FA0A1W2PPD8 638 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 PLEKHG3A1L390 1219 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 FCHSD2O94868 740 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 MS4A1P11836 297 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 LTKP29376 864 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 B4GALNT3Q6L9W6 998 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 TCP11L2Q8N4U5 519 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 USP54Q70EL1 1684 aa8.84□□□□□ -0.99
SMG6-217ENST00000575338 IL16Q14005 1332 aa8.83□□□□□ -1
SMG6-217ENST00000575338 U2SURPO15042 1029 aaKnown RBP8.83□□□□□ -1
SMG6-217ENST00000575338 CEBPAP49715 358 aaPredicted RBP8.83□□□□□ -1
SMG6-217ENST00000575338 ANKLE2Q86XL3 938 aa8.83□□□□□ -1
SMG6-217ENST00000575338 PHF23Q9BUL5 403 aaPredicted RBP8.83□□□□□ -1
SMG6-217ENST00000575338 SENP3Q9H4L4 574 aaPredicted RBP8.83□□□□□ -1
SMG6-217ENST00000575338 AMOTL2Q9Y2J4 779 aa8.83□□□□□ -1
SMG6-217ENST00000575338 RGPD8O14715 1765 aaPredicted RBP8.83□□□□□ -1
SMG6-217ENST00000575338 LMOD3Q0VAK6 560 aa8.82□□□□□ -1
SMG6-217ENST00000575338 USP6P35125 1406 aa8.81□□□□□ -1
SMG6-217ENST00000575338 CANXP27824 592 aaKnown RBP8.81□□□□□ -1
SMG6-217ENST00000575338 PDE3AQ14432 1141 aa8.81□□□□□ -1
SMG6-217ENST00000575338 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.81□□□□□ -1
SMG6-217ENST00000575338 PTPRUQ92729 1446 aa8.8□□□□□ -1
SMG6-217ENST00000575338 DLG5Q8TDM6 1919 aa8.8□□□□□ -1
SMG6-217ENST00000575338 SENP3-EIF4A1A0A087X0R7 540 aa8.8□□□□□ -1
SMG6-217ENST00000575338 ZNF428Q96B54 188 aa8.8□□□□□ -1
SMG6-217ENST00000575338 SLC26A8Q96RN1 970 aa8.8□□□□□ -1
SMG6-217ENST00000575338 KIF24Q5T7B8 1368 aa8.8□□□□□ -1
SMG6-217ENST00000575338 OVOS2A0A0J9YW53 1432 aa8.8□□□□□ -1
SMG6-217ENST00000575338 OVOS2Q6IE36 1432 aa8.8□□□□□ -1
SMG6-217ENST00000575338 TMPOP42166 694 aaKnown RBP8.79□□□□□ -1
SMG6-217ENST00000575338 HAP1P54257 671 aaPredicted RBP8.79□□□□□ -1
SMG6-217ENST00000575338 EXOC6Q8TAG9 804 aa8.79□□□□□ -1
SMG6-217ENST00000575338 PLEKHF1Q96S99 279 aa8.79□□□□□ -1
SMG6-217ENST00000575338 POLKQ9UBT6 870 aa8.79□□□□□ -1
SMG6-217ENST00000575338 ACEP12821 1306 aa8.79□□□□□ -1
SMG6-217ENST00000575338 TTC21BQ7Z4L5 1316 aa8.79□□□□□ -1
SMG6-217ENST00000575338 TCERG1O14776 1098 aaKnown RBP8.78□□□□□ -1
SMG6-217ENST00000575338 NEUROD2Q15784 382 aa8.78□□□□□ -1
SMG6-217ENST00000575338 CENPQQ7L2Z9 268 aaPredicted RBP8.78□□□□□ -1
SMG6-217ENST00000575338 PRR36Q9H6K5 1346 aa8.78□□□□□ -1
SMG6-217ENST00000575338 NWD1Q149M9 1564 aa8.78□□□□□ -1
SMG6-217ENST00000575338 USP31Q70CQ4 1352 aa8.77□□□□□ -1.01
SMG6-217ENST00000575338 PPM1GO15355 546 aaPredicted RBP8.77□□□□□ -1.01
SMG6-217ENST00000575338 PLPPR3Q6T4P5 718 aa8.77□□□□□ -1.01
SMG6-217ENST00000575338 NME9Q86XW9 330 aa8.77□□□□□ -1.01
SMG6-217ENST00000575338 NGDNQ8NEJ9 315 aaKnown RBP8.77□□□□□ -1.01
SMG6-217ENST00000575338 CRBNQ96SW2 442 aa8.77□□□□□ -1.01
SMG6-217ENST00000575338 CHMP4BQ9H444 224 aaKnown RBP8.77□□□□□ -1.01
SMG6-217ENST00000575338 RBM19Q9Y4C8 960 aaKnown RBP8.77□□□□□ -1.01
SMG6-217ENST00000575338 KIF1AQ12756 1690 aa8.76□□□□□ -1.01
SMG6-217ENST00000575338 RIPK4P57078 832 aa8.76□□□□□ -1.01
SMG6-217ENST00000575338 NFE2L2Q16236 605 aa8.76□□□□□ -1.01
SMG6-217ENST00000575338 RSPH6AQ9H0K4 717 aa8.76□□□□□ -1.01
SMG6-217ENST00000575338 NPHP4O75161 1426 aaPredicted RBP8.76□□□□□ -1.01
SMG6-217ENST00000575338 SSH2Q76I76 1423 aa8.76□□□□□ -1.01
SMG6-217ENST00000575338 RGPD1P0DJD0 1748 aa8.76□□□□□ -1.01
SMG6-217ENST00000575338 KIF16BQ96L93 1317 aa8.76□□□□□ -1.01
SMG6-217ENST00000575338 FANCIQ9NVI1 1328 aa8.76□□□□□ -1.01
SMG6-217ENST00000575338 PIK3C2AO00443 1686 aa8.75□□□□□ -1.01
SMG6-217ENST00000575338 ADGRL3Q9HAR2 1447 aa8.75□□□□□ -1.01
SMG6-217ENST00000575338 PRKAR2BP31323 418 aa8.75□□□□□ -1.01
SMG6-217ENST00000575338 IL13P35225 146 aa8.75□□□□□ -1.01
SMG6-217ENST00000575338 RRP7AQ9Y3A4 280 aaKnown RBP8.75□□□□□ -1.01
SMG6-217ENST00000575338 SBNO1A3KN83 1393 aa8.74□□□□□ -1.01
SMG6-217ENST00000575338 FLT4P35916 1363 aa8.74□□□□□ -1.01
SMG6-217ENST00000575338 IPO8O15397 1037 aaKnown RBP8.74□□□□□ -1.01
SMG6-217ENST00000575338 PLIN1O60240 522 aa8.74□□□□□ -1.01
SMG6-217ENST00000575338 RARSP54136 660 aaKnown RBP8.74□□□□□ -1.01
SMG6-217ENST00000575338 GNAI1P63096 354 aa8.74□□□□□ -1.01
SMG6-217ENST00000575338 ALDH1L2Q3SY69 923 aa8.74□□□□□ -1.01
SMG6-217ENST00000575338 SPINK5Q9NQ38 1064 aaPredicted RBP8.74□□□□□ -1.01
SMG6-217ENST00000575338 ARHGEF10O15013 1369 aa8.73□□□□□ -1.01
SMG6-217ENST00000575338 LTN1O94822 1766 aa8.73□□□□□ -1.01
SMG6-217ENST00000575338 VIRMAQ69YN4 1812 aaKnown RBP8.73□□□□□ -1.01
SMG6-217ENST00000575338 KCNA6P17658 529 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms