RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, human

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATPAF1-213	ENST00000574428	FOXO3	O43524	673 aa		32.67	■■■□□ 2.82
ATPAF1-213	ENST00000574428	NME9	Q86XW9	330 aa		32.66	■■■□□ 2.82
ATPAF1-213	ENST00000574428	PSME1	Q06323	249 aa		32.65	■■■□□ 2.82
ATPAF1-213	ENST00000574428	ANKRD26	Q9UPS8	1709 aa		32.65	■■■□□ 2.82
ATPAF1-213	ENST00000574428	MORC1	Q86VD1	984 aa		32.64	■■■□□ 2.82
ATPAF1-213	ENST00000574428	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.64	■■■□□ 2.82
ATPAF1-213	ENST00000574428	BRINP3	Q76B58	766 aa		32.63	■■■□□ 2.81
ATPAF1-213	ENST00000574428	CCER2	I3L3R5	266 aa		32.62	■■■□□ 2.81
ATPAF1-213	ENST00000574428	XPC	Q01831	940 aa	Predicted RBP	32.62	■■■□□ 2.81
ATPAF1-213	ENST00000574428	ZRANB1	Q9UGI0	708 aa		32.62	■■■□□ 2.81
ATPAF1-213	ENST00000574428	TTC21A	Q8NDW8	1320 aa		32.6	■■■□□ 2.81
ATPAF1-213	ENST00000574428	TNNT2	P45379	298 aa	Predicted RBP	32.59	■■■□□ 2.81
ATPAF1-213	ENST00000574428	DDX17	Q92841	729 aa	Known RBP	32.59	■■■□□ 2.81
ATPAF1-213	ENST00000574428	PAK3	O75914	559 aa	Predicted RBP	32.58	■■■□□ 2.81
ATPAF1-213	ENST00000574428	PIK3C2A	O00443	1686 aa		32.58	■■■□□ 2.81
ATPAF1-213	ENST00000574428	CCDC184	Q52MB2	194 aa		32.58	■■■□□ 2.81
ATPAF1-213	ENST00000574428	BRD4	O60885	1362 aa	Predicted RBP	32.56	■■■□□ 2.8
ATPAF1-213	ENST00000574428	PPP2R1A	P30153	589 aa		32.56	■■■□□ 2.8
ATPAF1-213	ENST00000574428	KRT28	Q7Z3Y7	464 aa		32.55	■■■□□ 2.8
ATPAF1-213	ENST00000574428	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.55	■■■□□ 2.8
ATPAF1-213	ENST00000574428	NPHP3	Q7Z494	1330 aa		32.54	■■■□□ 2.8
ATPAF1-213	ENST00000574428	NLRP13	Q86W25	1043 aa		32.53	■■■□□ 2.8
ATPAF1-213	ENST00000574428	COG3	Q96JB2	828 aa		32.53	■■■□□ 2.8
ATPAF1-213	ENST00000574428	OVOS2	A0A0J9YW53	1432 aa		32.52	■■■□□ 2.8
ATPAF1-213	ENST00000574428	OVOS2	Q6IE36	1432 aa		32.52	■■■□□ 2.8
ATPAF1-213	ENST00000574428	MRS2	Q9HD23	443 aa		32.51	■■■□□ 2.79
ATPAF1-213	ENST00000574428	PXDN	Q92626	1479 aa		32.5	■■■□□ 2.79
ATPAF1-213	ENST00000574428	ABTB2	Q8N961	1025 aa		32.5	■■■□□ 2.79
ATPAF1-213	ENST00000574428	NUTM2G	Q5VZR2	741 aa		32.49	■■■□□ 2.79
ATPAF1-213	ENST00000574428	ROBO1	Q9Y6N7	1651 aa		32.48	■■■□□ 2.79
ATPAF1-213	ENST00000574428	USP31	Q70CQ4	1352 aa		32.48	■■■□□ 2.79
ATPAF1-213	ENST00000574428	NLRP6	P59044	892 aa		32.47	■■■□□ 2.79
ATPAF1-213	ENST00000574428	IQSEC2	Q5JU85	1478 aa		32.46	■■■□□ 2.79
ATPAF1-213	ENST00000574428	MARF1	Q9Y4F3	1742 aa	Known RBP	32.46	■■■□□ 2.79
ATPAF1-213	ENST00000574428	NHSL1	Q5SYE7	1610 aa		32.45	■■■□□ 2.79
ATPAF1-213	ENST00000574428	USP54	Q70EL1	1684 aa		32.44	■■■□□ 2.78
ATPAF1-213	ENST00000574428	FBLN1	P23142	703 aa		32.44	■■■□□ 2.78
ATPAF1-213	ENST00000574428	CERK	Q8TCT0	537 aa		32.44	■■■□□ 2.78
ATPAF1-213	ENST00000574428	TOM1	O60784	492 aa		32.43	■■■□□ 2.78
ATPAF1-213	ENST00000574428	LMOD2	Q6P5Q4	547 aa		32.43	■■■□□ 2.78
ATPAF1-213	ENST00000574428	SBNO1	A3KN83	1393 aa		32.43	■■■□□ 2.78
ATPAF1-213	ENST00000574428	ALS2	Q96Q42	1657 aa		32.43	■■■□□ 2.78
ATPAF1-213	ENST00000574428	SCAF1	Q9H7N4	1312 aa	Known RBP	32.42	■■■□□ 2.78
ATPAF1-213	ENST00000574428	UBAP1L	F5GYI3	381 aa		32.4	■■■□□ 2.78
ATPAF1-213	ENST00000574428	TNS3	Q68CZ2	1445 aa		32.4	■■■□□ 2.78
ATPAF1-213	ENST00000574428	SOS2	Q07890	1332 aa	Predicted RBP	32.4	■■■□□ 2.78
ATPAF1-213	ENST00000574428	SOX12	O15370	315 aa		32.39	■■■□□ 2.78
ATPAF1-213	ENST00000574428	MTHFS	P49914	203 aa		32.39	■■■□□ 2.78
ATPAF1-213	ENST00000574428	PIP4K2B	P78356	416 aa		32.37	■■■□□ 2.77
ATPAF1-213	ENST00000574428	AATK	Q6ZMQ8	1374 aa		32.37	■■■□□ 2.77
ATPAF1-213	ENST00000574428	SPATA31A3	Q5VYP0	1347 aa		32.36	■■■□□ 2.77
ATPAF1-213	ENST00000574428	PLEKHG5	O94827	1062 aa		32.35	■■■□□ 2.77
ATPAF1-213	ENST00000574428	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.34	■■■□□ 2.77
ATPAF1-213	ENST00000574428	POLK	Q9UBT6	870 aa		32.34	■■■□□ 2.77
ATPAF1-213	ENST00000574428	MAP2	P11137	1827 aa	Known RBP	32.34	■■■□□ 2.77
ATPAF1-213	ENST00000574428	RRS1	Q15050	365 aa	Known RBP	32.33	■■■□□ 2.77
ATPAF1-213	ENST00000574428	EMILIN1	Q9Y6C2	1016 aa		32.32	■■■□□ 2.77
ATPAF1-213	ENST00000574428	ARHGEF10	O15013	1369 aa		32.3	■■■□□ 2.76
ATPAF1-213	ENST00000574428	PPM1G	O15355	546 aa	Predicted RBP	32.3	■■■□□ 2.76
ATPAF1-213	ENST00000574428	SMG6	Q86US8	1419 aa	Known RBP	32.3	■■■□□ 2.76
ATPAF1-213	ENST00000574428	FAM9B	Q8IZU0	186 aa		32.3	■■■□□ 2.76
ATPAF1-213	ENST00000574428	PNISR	Q8TF01	805 aa	Known RBP	32.3	■■■□□ 2.76
ATPAF1-213	ENST00000574428	USP19	O94966	1318 aa		32.29	■■■□□ 2.76
ATPAF1-213	ENST00000574428	SLIT3	O75094	1523 aa		32.29	■■■□□ 2.76
ATPAF1-213	ENST00000574428	MED1	Q15648	1581 aa	Predicted RBP	32.28	■■■□□ 2.76
ATPAF1-213	ENST00000574428	NFAT5	O94916	1531 aa		32.27	■■■□□ 2.76
ATPAF1-213	ENST00000574428	CFAP53	Q96M91	514 aa		32.27	■■■□□ 2.76
ATPAF1-213	ENST00000574428	MAP3K19	Q56UN5	1328 aa		32.24	■■■□□ 2.75
ATPAF1-213	ENST00000574428	PHLPP1	O60346	1717 aa		32.24	■■■□□ 2.75
ATPAF1-213	ENST00000574428	PEAK1	Q9H792	1746 aa		32.24	■■■□□ 2.75
ATPAF1-213	ENST00000574428	COL3A1	P02461	1466 aa	Predicted RBP	32.24	■■■□□ 2.75
ATPAF1-213	ENST00000574428	KCNH5	Q8NCM2	988 aa		32.24	■■■□□ 2.75
ATPAF1-213	ENST00000574428	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.24	■■■□□ 2.75
ATPAF1-213	ENST00000574428	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.23	■■■□□ 2.75
ATPAF1-213	ENST00000574428	GC	P02774	474 aa		32.23	■■■□□ 2.75
ATPAF1-213	ENST00000574428	YTHDC1	Q96MU7	727 aa	Known RBP	32.23	■■■□□ 2.75
ATPAF1-213	ENST00000574428	PNPLA6	Q8IY17	1366 aa		32.22	■■■□□ 2.75
ATPAF1-213	ENST00000574428	CRYBG1	Q9Y4K1	1723 aa		32.22	■■■□□ 2.75
ATPAF1-213	ENST00000574428	CABLES1	Q8TDN4	633 aa		32.22	■■■□□ 2.75
ATPAF1-213	ENST00000574428	SHPRH	Q149N8	1683 aa		32.22	■■■□□ 2.75
ATPAF1-213	ENST00000574428	COL16A1	Q07092	1604 aa	Predicted RBP	32.2	■■■□□ 2.75
ATPAF1-213	ENST00000574428	LTN1	O94822	1766 aa		32.19	■■■□□ 2.74
ATPAF1-213	ENST00000574428	LRRC59	Q96AG4	307 aa	Known RBP	32.18	■■■□□ 2.74
ATPAF1-213	ENST00000574428	INSR	P06213	1382 aa		32.18	■■■□□ 2.74
ATPAF1-213	ENST00000574428	WDR43	Q15061	677 aa	Known RBP eCLIP	32.17	■■■□□ 2.74
ATPAF1-213	ENST00000574428	AMPH	P49418	695 aa		32.16	■■■□□ 2.74
ATPAF1-213	ENST00000574428	ZBTB7C	A1YPR0	619 aa		32.15	■■■□□ 2.74
ATPAF1-213	ENST00000574428	FLT4	P35916	1363 aa		32.15	■■■□□ 2.74
ATPAF1-213	ENST00000574428	ABCA3	Q99758	1704 aa		32.14	■■■□□ 2.74
ATPAF1-213	ENST00000574428	DIAPH1	O60610	1272 aa	Known RBP	32.13	■■■□□ 2.73
ATPAF1-213	ENST00000574428	HSP90AB2P	Q58FF8	381 aa		32.13	■■■□□ 2.73
ATPAF1-213	ENST00000574428	ADAMTS8	Q9UP79	889 aa		32.13	■■■□□ 2.73
ATPAF1-213	ENST00000574428	ZC3H6	P61129	1189 aa	Known RBP	32.12	■■■□□ 2.73
ATPAF1-213	ENST00000574428	ARHGEF25	Q86VW2	580 aa		32.12	■■■□□ 2.73
ATPAF1-213	ENST00000574428	KIF24	Q5T7B8	1368 aa		32.11	■■■□□ 2.73
ATPAF1-213	ENST00000574428	RTL1	A6NKG5	1358 aa		32.1	■■■□□ 2.73
ATPAF1-213	ENST00000574428	HOXC9	P31274	260 aa		32.1	■■■□□ 2.73
ATPAF1-213	ENST00000574428	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.08	■■■□□ 2.73
ATPAF1-213	ENST00000574428	NUDC	Q9Y266	331 aa		32.08	■■■□□ 2.73
ATPAF1-213	ENST00000574428	U2SURP	O15042	1029 aa	Known RBP	32.07	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms