RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 PZPP20742 1482 aa14.47□□□□□ -0.09
CIITA-208ENST00000572665 LTBP4Q8N2S1 1624 aa14.47□□□□□ -0.09
CIITA-208ENST00000572665 MAST1Q9Y2H9 1570 aa14.47□□□□□ -0.09
CIITA-208ENST00000572665 LOC105371045A0A1W2PR82 267 aa14.46□□□□□ -0.09
CIITA-208ENST00000572665 PARP9Q8IXQ6 854 aa14.46□□□□□ -0.09
CIITA-208ENST00000572665 TNRQ92752 1358 aa14.46□□□□□ -0.1
CIITA-208ENST00000572665 ZC3H13Q5T200 1668 aaKnown RBP14.46□□□□□ -0.1
CIITA-208ENST00000572665 TCOF1Q13428 1488 aaKnown RBP14.45□□□□□ -0.1
CIITA-208ENST00000572665 MYOM3Q5VTT5 1437 aa14.45□□□□□ -0.1
CIITA-208ENST00000572665 TTC13Q8NBP0 860 aa14.45□□□□□ -0.1
CIITA-208ENST00000572665 DNMT1P26358 1616 aaKnown RBP14.44□□□□□ -0.1
CIITA-208ENST00000572665 EIF2AK4Q9P2K8 1649 aaKnown RBP14.44□□□□□ -0.1
CIITA-208ENST00000572665 POLR1AO95602 1720 aaPredicted RBP14.44□□□□□ -0.1
CIITA-208ENST00000572665 COL9A1P20849 921 aa14.44□□□□□ -0.1
CIITA-208ENST00000572665 PRSS12P56730 875 aa14.43□□□□□ -0.1
CIITA-208ENST00000572665 NLRP1Q9C000 1473 aa14.43□□□□□ -0.1
CIITA-208ENST00000572665 RNF17Q9BXT8 1623 aaKnown RBP14.42□□□□□ -0.1
CIITA-208ENST00000572665 PTPREP23469 700 aa14.42□□□□□ -0.1
CIITA-208ENST00000572665 THEMISQ8N1K5 641 aaPredicted RBP14.42□□□□□ -0.1
CIITA-208ENST00000572665 TTLL12Q14166 644 aaPredicted RBP14.41□□□□□ -0.1
CIITA-208ENST00000572665 FAM161AQ3B820 660 aa14.41□□□□□ -0.1
CIITA-208ENST00000572665 CDCA7LQ96GN5 454 aa14.41□□□□□ -0.1
CIITA-208ENST00000572665 ADGRG1Q9Y653 693 aa14.41□□□□□ -0.1
CIITA-208ENST00000572665 PPP1R3GB7ZBB8 358 aa14.4□□□□□ -0.1
CIITA-208ENST00000572665 PHOX2BQ99453 314 aa14.4□□□□□ -0.1
CIITA-208ENST00000572665 DUOX2Q9NRD8 1548 aa14.4□□□□□ -0.1
CIITA-208ENST00000572665 KANK4Q5T7N3 995 aaPredicted RBP14.39□□□□□ -0.11
CIITA-208ENST00000572665 FBXO31Q5XUX0 539 aaPredicted RBP14.39□□□□□ -0.11
CIITA-208ENST00000572665 METTL3Q86U44 580 aaKnown RBP14.39□□□□□ -0.11
CIITA-208ENST00000572665 ANKLE2Q86XL3 938 aa14.39□□□□□ -0.11
CIITA-208ENST00000572665 GTF3C3Q9Y5Q9 886 aa14.39□□□□□ -0.11
CIITA-208ENST00000572665 ZNF335Q9H4Z2 1342 aaPredicted RBP14.39□□□□□ -0.11
CIITA-208ENST00000572665 UGGT1Q9NYU2 1555 aa14.39□□□□□ -0.11
CIITA-208ENST00000572665 OATP04181 439 aa14.38□□□□□ -0.11
CIITA-208ENST00000572665 DAXXQ9UER7 740 aaPredicted RBP14.38□□□□□ -0.11
CIITA-208ENST00000572665 IL27Q8NEV9 243 aa14.37□□□□□ -0.11
CIITA-208ENST00000572665 PXYLP1Q8TE99 480 aa14.37□□□□□ -0.11
CIITA-208ENST00000572665 SHANK2Q9UPX8 1470 aa14.37□□□□□ -0.11
CIITA-208ENST00000572665 CROCC2H7BZ55 1655 aa14.36□□□□□ -0.11
CIITA-208ENST00000572665 ABCC3O15438 1527 aa14.36□□□□□ -0.11
CIITA-208ENST00000572665 CPS1P31327 1500 aa14.36□□□□□ -0.11
CIITA-208ENST00000572665 ST18O60284 1047 aa14.36□□□□□ -0.11
CIITA-208ENST00000572665 GIGYF2Q6Y7W6 1299 aaKnown RBP14.36□□□□□ -0.11
CIITA-208ENST00000572665 TMUB1Q9BVT8 246 aa14.36□□□□□ -0.11
CIITA-208ENST00000572665 REPIN1Q9BWE0 567 aaKnown RBP14.36□□□□□ -0.11
CIITA-208ENST00000572665 FAM117AQ9C073 453 aa14.36□□□□□ -0.11
CIITA-208ENST00000572665 FAM198AQ9UFP1 575 aa14.36□□□□□ -0.11
CIITA-208ENST00000572665 PTPN23Q9H3S7 1636 aa14.36□□□□□ -0.11
CIITA-208ENST00000572665 DEPDC5O75140 1603 aa14.35□□□□□ -0.11
CIITA-208ENST00000572665 UBAP1LF5GYI3 381 aa14.35□□□□□ -0.11
CIITA-208ENST00000572665 DISP3Q9P2K9 1392 aa14.34□□□□□ -0.11
CIITA-208ENST00000572665 SPATA31D1Q6ZQQ2 1576 aa14.34□□□□□ -0.11
CIITA-208ENST00000572665 ERBINQ96RT1 1412 aa14.34□□□□□ -0.11
CIITA-208ENST00000572665 CLCN1P35523 988 aa14.34□□□□□ -0.11
CIITA-208ENST00000572665 MDM2Q00987 491 aaPredicted RBP14.34□□□□□ -0.11
CIITA-208ENST00000572665 CEP152O94986 1710 aa14.34□□□□□ -0.11
CIITA-208ENST00000572665 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.34□□□□□ -0.11
CIITA-208ENST00000572665 KCNK17Q96T54 332 aa14.33□□□□□ -0.12
CIITA-208ENST00000572665 TSKSQ9UJT2 592 aa14.33□□□□□ -0.12
CIITA-208ENST00000572665 NEURL4Q96JN8 1562 aa14.33□□□□□ -0.12
CIITA-208ENST00000572665 ERBB3P21860 1342 aa14.33□□□□□ -0.12
CIITA-208ENST00000572665 KANK1Q14678 1352 aa14.33□□□□□ -0.12
CIITA-208ENST00000572665 KIF15Q9NS87 1388 aa14.33□□□□□ -0.12
CIITA-208ENST00000572665 DDRGK1Q96HY6 314 aa14.32□□□□□ -0.12
CIITA-208ENST00000572665 GPCPD1Q9NPB8 672 aa14.32□□□□□ -0.12
CIITA-208ENST00000572665 MED14O60244 1454 aa14.31□□□□□ -0.12
CIITA-208ENST00000572665 ERVK-7P63135 1459 aa14.31□□□□□ -0.12
CIITA-208ENST00000572665 CFAP65Q6ZU64 1925 aaKnown RBP14.31□□□□□ -0.12
CIITA-208ENST00000572665 IQGAP1P46940 1657 aa14.31□□□□□ -0.12
CIITA-208ENST00000572665 TOM1O60784 492 aa14.31□□□□□ -0.12
CIITA-208ENST00000572665 VARS2Q5ST30 1063 aaKnown RBP14.31□□□□□ -0.12
CIITA-208ENST00000572665 NPHP4O75161 1426 aaPredicted RBP14.31□□□□□ -0.12
CIITA-208ENST00000572665 PRDM15P57071 1507 aaPredicted RBP14.31□□□□□ -0.12
CIITA-208ENST00000572665 MROH1Q8NDA8 1641 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 TRIM6-TRIM34B2RNG4 842 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 MS4A1P11836 297 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 RBM46Q8TBY0 533 aaKnown RBP14.3□□□□□ -0.12
CIITA-208ENST00000572665 NLRP7Q8WX94 980 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 ANKRD30AQ9BXX3 1397 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 ABCC5O15440 1437 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 DAPK1P53355 1430 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 ARHGAP31Q2M1Z3 1444 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 FGD6Q6ZV73 1430 aa14.3□□□□□ -0.12
CIITA-208ENST00000572665 PLEKHG3A1L390 1219 aa14.29□□□□□ -0.12
CIITA-208ENST00000572665 EMP3P54852 163 aa14.29□□□□□ -0.12
CIITA-208ENST00000572665 RRP7BPQ9NSQ0 103 aa14.29□□□□□ -0.12
CIITA-208ENST00000572665 UBR1Q8IWV7 1749 aa14.27□□□□□ -0.12
CIITA-208ENST00000572665 MARVELD3Q96A59 401 aa14.27□□□□□ -0.13
CIITA-208ENST00000572665 EYA1Q99502 592 aa14.27□□□□□ -0.13
CIITA-208ENST00000572665 PSEN2P49810 448 aa14.26□□□□□ -0.13
CIITA-208ENST00000572665 PROX2Q3B8N5 592 aa14.26□□□□□ -0.13
CIITA-208ENST00000572665 EID1Q9Y6B2 187 aa14.26□□□□□ -0.13
CIITA-208ENST00000572665 NBPF26B4DH59 902 aa14.25□□□□□ -0.13
CIITA-208ENST00000572665 C3orf80F5H4A9 247 aa14.25□□□□□ -0.13
CIITA-208ENST00000572665 POTEEQ6S8J3 1075 aa14.25□□□□□ -0.13
CIITA-208ENST00000572665 ZBED2Q9BTP6 218 aa14.25□□□□□ -0.13
CIITA-208ENST00000572665 VWDEQ8N2E2 1590 aa14.25□□□□□ -0.13
CIITA-208ENST00000572665 ONECUT3O60422 494 aaPredicted RBP14.24□□□□□ -0.13
CIITA-208ENST00000572665 NUDT18Q6ZVK8 323 aa14.24□□□□□ -0.13
CIITA-208ENST00000572665 PACS2Q86VP3 889 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms