RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 NEUROD1Q13562 356 aa26.19■■□□□ 1.78
CHD3-214ENST00000572579 SEPT12Q8IYM1 358 aa26.19■■□□□ 1.78
CHD3-214ENST00000572579 POLR3AO14802 1390 aaPredicted RBP26.19■■□□□ 1.78
CHD3-214ENST00000572579 BTG4Q9NY30 223 aa26.18■■□□□ 1.78
CHD3-214ENST00000572579 CENPJQ9HC77 1338 aaPredicted RBP26.16■■□□□ 1.78
CHD3-214ENST00000572579 NUTM2GQ5VZR2 741 aa26.16■■□□□ 1.78
CHD3-214ENST00000572579 CABP2Q9NPB3 220 aa26.16■■□□□ 1.78
CHD3-214ENST00000572579 SRCAPQ6ZRS2 3230 aa26.16■■□□□ 1.78
CHD3-214ENST00000572579 CCDC9Q9Y3X0 531 aaKnown RBP26.13■■□□□ 1.77
CHD3-214ENST00000572579 PLCH1Q4KWH8 1693 aa26.12■■□□□ 1.77
CHD3-214ENST00000572579 SRPK2P78362 688 aaKnown RBP26.11■■□□□ 1.77
CHD3-214ENST00000572579 CHRNA2Q15822 529 aa26.1■■□□□ 1.77
CHD3-214ENST00000572579 NWD2Q9ULI1 1742 aa26.1■■□□□ 1.77
CHD3-214ENST00000572579 KIAA0232Q92628 1395 aa26.09■■□□□ 1.77
CHD3-214ENST00000572579 FAM98CQ17RN3 349 aaKnown RBP26.09■■□□□ 1.77
CHD3-214ENST00000572579 PRDM11Q9NQV5 511 aa26.09■■□□□ 1.77
CHD3-214ENST00000572579 CRYBG1Q9Y4K1 1723 aa26.08■■□□□ 1.77
CHD3-214ENST00000572579 ZC3H6P61129 1189 aaKnown RBP26.08■■□□□ 1.77
CHD3-214ENST00000572579 CCDC125Q86Z20 511 aa26.08■■□□□ 1.77
CHD3-214ENST00000572579 TOPAZ1Q8N9V7 1692 aa26.08■■□□□ 1.77
CHD3-214ENST00000572579 CABP1Q9NZU7 370 aa26.07■■□□□ 1.76
CHD3-214ENST00000572579 SPATA31A5Q5VU36 1347 aa26.07■■□□□ 1.76
CHD3-214ENST00000572579 SPATA31A7Q8IWB4 1347 aa26.07■■□□□ 1.76
CHD3-214ENST00000572579 PPIP5K1Q6PFW1 1433 aa26.06■■□□□ 1.76
CHD3-214ENST00000572579 NRAPQ86VF7 1730 aa26.06■■□□□ 1.76
CHD3-214ENST00000572579 KRT27Q7Z3Y8 459 aa26.06■■□□□ 1.76
CHD3-214ENST00000572579 ABTB2Q8N961 1025 aa26.05■■□□□ 1.76
CHD3-214ENST00000572579 ITSN1Q15811 1721 aa26.03■■□□□ 1.76
CHD3-214ENST00000572579 COL14A1Q05707 1796 aaKnown RBP26.03■■□□□ 1.76
CHD3-214ENST00000572579 BRWD3Q6RI45 1802 aa26.03■■□□□ 1.76
CHD3-214ENST00000572579 DEFB132Q7Z7B7 95 aa26.03■■□□□ 1.76
CHD3-214ENST00000572579 USP19O94966 1318 aa26.02■■□□□ 1.76
CHD3-214ENST00000572579 ROCK2O75116 1388 aaKnown RBP26.01■■□□□ 1.75
CHD3-214ENST00000572579 BLMP54132 1417 aaPredicted RBP26.01■■□□□ 1.75
CHD3-214ENST00000572579 FAM182BQ5T319 152 aa26■■□□□ 1.75
CHD3-214ENST00000572579 TRPM1Q7Z4N2 1603 aa25.99■■□□□ 1.75
CHD3-214ENST00000572579 SPATA31A1Q5TZJ5 1347 aa25.99■■□□□ 1.75
CHD3-214ENST00000572579 SSH2Q76I76 1423 aa25.98■■□□□ 1.75
CHD3-214ENST00000572579 GCP02774 474 aa25.98■■□□□ 1.75
CHD3-214ENST00000572579 STRN4Q9NRL3 753 aa25.98■■□□□ 1.75
CHD3-214ENST00000572579 EVC2Q86UK5 1308 aa25.97■■□□□ 1.75
CHD3-214ENST00000572579 QRICH2Q9H0J4 1663 aa25.96■■□□□ 1.75
CHD3-214ENST00000572579 A0A0G2JS52 829 aa25.96■■□□□ 1.75
CHD3-214ENST00000572579 MYT1Q01538 1121 aa25.96■■□□□ 1.75
CHD3-214ENST00000572579 USP6P35125 1406 aa25.96■■□□□ 1.75
CHD3-214ENST00000572579 PHRF1Q9P1Y6 1649 aaKnown RBP25.96■■□□□ 1.75
CHD3-214ENST00000572579 CPDO75976 1380 aa25.95■■□□□ 1.75
CHD3-214ENST00000572579 NLRP13Q86W25 1043 aa25.95■■□□□ 1.74
CHD3-214ENST00000572579 CAMTA1Q9Y6Y1 1673 aa25.94■■□□□ 1.74
CHD3-214ENST00000572579 LARP1Q6PKG0 1096 aaKnown RBP25.94■■□□□ 1.74
CHD3-214ENST00000572579 NRKQ7Z2Y5 1582 aa25.92■■□□□ 1.74
CHD3-214ENST00000572579 ZRANB1Q9UGI0 708 aa25.92■■□□□ 1.74
CHD3-214ENST00000572579 BRD4O60885 1362 aaPredicted RBP25.91■■□□□ 1.74
CHD3-214ENST00000572579 NLRP6P59044 892 aa25.9■■□□□ 1.74
CHD3-214ENST00000572579 USP35Q9P2H5 1018 aa25.9■■□□□ 1.74
CHD3-214ENST00000572579 EVA1CP58658 441 aa25.89■■□□□ 1.74
CHD3-214ENST00000572579 THSD7AQ9UPZ6 1657 aa25.89■■□□□ 1.73
CHD3-214ENST00000572579 CARD11Q9BXL7 1154 aa25.87■■□□□ 1.73
CHD3-214ENST00000572579 TTC21BQ7Z4L5 1316 aa25.87■■□□□ 1.73
CHD3-214ENST00000572579 BARGINQ6ZT62 677 aa25.86■■□□□ 1.73
CHD3-214ENST00000572579 LMO7Q8WWI1 1683 aa25.86■■□□□ 1.73
CHD3-214ENST00000572579 SF3B2Q13435 895 aaKnown RBP25.85■■□□□ 1.73
CHD3-214ENST00000572579 CPSF1Q10570 1443 aaKnown RBP25.85■■□□□ 1.73
CHD3-214ENST00000572579 ZNF692Q9BU19 519 aaPredicted RBP25.84■■□□□ 1.73
CHD3-214ENST00000572579 AXIN2Q9Y2T1 843 aa25.84■■□□□ 1.73
CHD3-214ENST00000572579 TRIM26Q12899 539 aaPredicted RBP25.83■■□□□ 1.73
CHD3-214ENST00000572579 TCP11L2Q8N4U5 519 aa25.83■■□□□ 1.73
CHD3-214ENST00000572579 SLIT3O75094 1523 aa25.83■■□□□ 1.72
CHD3-214ENST00000572579 SBNO2Q9Y2G9 1366 aa25.82■■□□□ 1.72
CHD3-214ENST00000572579 COL5A2P05997 1499 aaPredicted RBP25.81■■□□□ 1.72
CHD3-214ENST00000572579 EN1Q05925 392 aaPredicted RBP25.81■■□□□ 1.72
CHD3-214ENST00000572579 AATKQ6ZMQ8 1374 aa25.81■■□□□ 1.72
CHD3-214ENST00000572579 TONSLQ96HA7 1378 aa25.81■■□□□ 1.72
CHD3-214ENST00000572579 ZBTB7CA1YPR0 619 aa25.8■■□□□ 1.72
CHD3-214ENST00000572579 ARHGEF25Q86VW2 580 aa25.79■■□□□ 1.72
CHD3-214ENST00000572579 PIK3C2AO00443 1686 aa25.79■■□□□ 1.72
CHD3-214ENST00000572579 BAG6P46379 1132 aa25.78■■□□□ 1.72
CHD3-214ENST00000572579 SLC12A5Q9H2X9 1139 aa25.78■■□□□ 1.72
CHD3-214ENST00000572579 CD163L1Q9NR16 1453 aa25.78■■□□□ 1.72
CHD3-214ENST00000572579 TRIM37O94972 964 aa25.77■■□□□ 1.72
CHD3-214ENST00000572579 FAM196AQ6ZSG2 479 aa25.77■■□□□ 1.72
CHD3-214ENST00000572579 KTN1Q86UP2 1357 aaKnown RBP25.76■■□□□ 1.71
CHD3-214ENST00000572579 TTC21AQ8NDW8 1320 aa25.75■■□□□ 1.71
CHD3-214ENST00000572579 SOX12O15370 315 aa25.75■■□□□ 1.71
CHD3-214ENST00000572579 TESK2Q96S53 571 aa25.75■■□□□ 1.71
CHD3-214ENST00000572579 THRAP3Q9Y2W1 955 aaKnown RBP25.75■■□□□ 1.71
CHD3-214ENST00000572579 CAMKK2Q96RR4 588 aa25.74■■□□□ 1.71
CHD3-214ENST00000572579 PDE3BQ13370 1112 aa25.73■■□□□ 1.71
CHD3-214ENST00000572579 EZH2Q15910 746 aaKnown RBP25.73■■□□□ 1.71
CHD3-214ENST00000572579 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.73■■□□□ 1.71
CHD3-214ENST00000572579 CRB1P82279 1406 aa25.72■■□□□ 1.71
CHD3-214ENST00000572579 COL18A1P39060 1754 aa25.72■■□□□ 1.71
CHD3-214ENST00000572579 NME9Q86XW9 330 aa25.72■■□□□ 1.71
CHD3-214ENST00000572579 DISP2A7MBM2 1401 aa25.71■■□□□ 1.71
CHD3-214ENST00000572579 PSDA5PKW4 1024 aaPredicted RBP25.71■■□□□ 1.71
CHD3-214ENST00000572579 TMC1Q8TDI8 760 aa25.71■■□□□ 1.71
CHD3-214ENST00000572579 ST20-MTHFSA0A0A6YYL1 179 aa25.7■■□□□ 1.7
CHD3-214ENST00000572579 KCNH5Q8NCM2 988 aa25.7■■□□□ 1.7
CHD3-214ENST00000572579 AKAP12Q02952 1782 aa25.69■■□□□ 1.7
CHD3-214ENST00000572579 USP31Q70CQ4 1352 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms