RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 ARHGEF28Q8N1W1 1705 aaKnown RBP28.38■■■□□ 2.13
NUP88-203ENST00000572019 KDM2AQ9Y2K7 1162 aa28.37■■■□□ 2.13
NUP88-203ENST00000572019 PSDA5PKW4 1024 aaPredicted RBP28.36■■■□□ 2.13
NUP88-203ENST00000572019 THSD7AQ9UPZ6 1657 aa28.35■■■□□ 2.13
NUP88-203ENST00000572019 RGPD1P0DJD0 1748 aa28.34■■■□□ 2.13
NUP88-203ENST00000572019 TNS1Q9HBL0 1735 aaKnown RBP28.34■■■□□ 2.13
NUP88-203ENST00000572019 GPRASP1Q5JY77 1395 aa28.34■■■□□ 2.13
NUP88-203ENST00000572019 WASLO00401 505 aaPredicted RBP28.33■■■□□ 2.13
NUP88-203ENST00000572019 DCAF11Q8TEB1 546 aa28.32■■■□□ 2.12
NUP88-203ENST00000572019 SPATA31A5Q5VU36 1347 aa28.31■■■□□ 2.12
NUP88-203ENST00000572019 SPATA31A7Q8IWB4 1347 aa28.31■■■□□ 2.12
NUP88-203ENST00000572019 PHRF1Q9P1Y6 1649 aaKnown RBP28.31■■■□□ 2.12
NUP88-203ENST00000572019 ITSN1Q15811 1721 aa28.3■■■□□ 2.12
NUP88-203ENST00000572019 ATP7BP35670 1465 aa28.3■■■□□ 2.12
NUP88-203ENST00000572019 EN1Q05925 392 aaPredicted RBP28.29■■■□□ 2.12
NUP88-203ENST00000572019 PAK3O75914 559 aaPredicted RBP28.28■■■□□ 2.12
NUP88-203ENST00000572019 EIF3AQ14152 1382 aaKnown RBP28.27■■■□□ 2.12
NUP88-203ENST00000572019 BAG6P46379 1132 aa28.27■■■□□ 2.12
NUP88-203ENST00000572019 NGDNQ8NEJ9 315 aaKnown RBP28.27■■■□□ 2.12
NUP88-203ENST00000572019 HRCP23327 699 aa28.25■■■□□ 2.11
NUP88-203ENST00000572019 CHRNA2Q15822 529 aa28.25■■■□□ 2.11
NUP88-203ENST00000572019 PRDM11Q9NQV5 511 aa28.25■■■□□ 2.11
NUP88-203ENST00000572019 KIAA0232Q92628 1395 aa28.24■■■□□ 2.11
NUP88-203ENST00000572019 TOPAZ1Q8N9V7 1692 aa28.24■■■□□ 2.11
NUP88-203ENST00000572019 NUTM2GQ5VZR2 741 aa28.22■■■□□ 2.11
NUP88-203ENST00000572019 NUDT16Q96DE0 195 aaKnown RBP28.22■■■□□ 2.11
NUP88-203ENST00000572019 SPATA31A1Q5TZJ5 1347 aa28.19■■■□□ 2.1
NUP88-203ENST00000572019 DISP2A7MBM2 1401 aa28.18■■■□□ 2.1
NUP88-203ENST00000572019 ZC3H6P61129 1189 aaKnown RBP28.17■■■□□ 2.1
NUP88-203ENST00000572019 R3HDM1Q15032 1099 aaKnown RBP28.17■■■□□ 2.1
NUP88-203ENST00000572019 EZH2Q15910 746 aaKnown RBP28.17■■■□□ 2.1
NUP88-203ENST00000572019 STRN4Q9NRL3 753 aa28.17■■■□□ 2.1
NUP88-203ENST00000572019 NRKQ7Z2Y5 1582 aa28.16■■■□□ 2.1
NUP88-203ENST00000572019 CDK19Q9BWU1 502 aa28.15■■■□□ 2.1
NUP88-203ENST00000572019 CAMTA1Q9Y6Y1 1673 aa28.13■■■□□ 2.09
NUP88-203ENST00000572019 TRIM37O94972 964 aa28.13■■■□□ 2.09
NUP88-203ENST00000572019 LMO7Q8WWI1 1683 aa28.13■■■□□ 2.09
NUP88-203ENST00000572019 POLR3AO14802 1390 aaPredicted RBP28.12■■■□□ 2.09
NUP88-203ENST00000572019 USP35Q9P2H5 1018 aa28.12■■■□□ 2.09
NUP88-203ENST00000572019 ACEP12821 1306 aa28.12■■■□□ 2.09
NUP88-203ENST00000572019 CAMKK2Q96RR4 588 aa28.1■■■□□ 2.09
NUP88-203ENST00000572019 RREB1Q92766 1687 aa28.1■■■□□ 2.09
NUP88-203ENST00000572019 SSH2Q76I76 1423 aa28.09■■■□□ 2.09
NUP88-203ENST00000572019 NBPF8Q3BBV2 869 aa28.09■■■□□ 2.09
NUP88-203ENST00000572019 KIAA1210Q9ULL0 1709 aa28.09■■■□□ 2.09
NUP88-203ENST00000572019 NUP188Q5SRE5 1749 aa28.08■■■□□ 2.09
NUP88-203ENST00000572019 LARP1Q6PKG0 1096 aaKnown RBP28.07■■■□□ 2.08
NUP88-203ENST00000572019 STAC3Q96MF2 364 aa28.07■■■□□ 2.08
NUP88-203ENST00000572019 NBPF1Q3BBV0 1214 aa28.06■■■□□ 2.08
NUP88-203ENST00000572019 FAM196AQ6ZSG2 479 aa28.05■■■□□ 2.08
NUP88-203ENST00000572019 CCDC61Q9Y6R9 512 aa28.05■■■□□ 2.08
NUP88-203ENST00000572019 PLEKHG3A1L390 1219 aa28.04■■■□□ 2.08
NUP88-203ENST00000572019 USP19O94966 1318 aa28.02■■■□□ 2.08
NUP88-203ENST00000572019 APBA3O96018 575 aa28.02■■■□□ 2.08
NUP88-203ENST00000572019 BARGINQ6ZT62 677 aa28.02■■■□□ 2.08
NUP88-203ENST00000572019 EVA1CP58658 441 aa28.01■■■□□ 2.07
NUP88-203ENST00000572019 ABTB2Q8N961 1025 aa28.01■■■□□ 2.07
NUP88-203ENST00000572019 CPDO75976 1380 aa27.99■■■□□ 2.07
NUP88-203ENST00000572019 PARP4Q9UKK3 1724 aaKnown RBP27.99■■■□□ 2.07
NUP88-203ENST00000572019 PPIP5K1Q6PFW1 1433 aa27.98■■■□□ 2.07
NUP88-203ENST00000572019 QRICH2Q9H0J4 1663 aa27.97■■■□□ 2.07
NUP88-203ENST00000572019 COL5A2P05997 1499 aaPredicted RBP27.97■■■□□ 2.07
NUP88-203ENST00000572019 TCP11L2Q8N4U5 519 aa27.96■■■□□ 2.07
NUP88-203ENST00000572019 CABP2Q9NPB3 220 aa27.96■■■□□ 2.07
NUP88-203ENST00000572019 PEAK1Q9H792 1746 aa27.95■■■□□ 2.07
NUP88-203ENST00000572019 PDE3BQ13370 1112 aa27.95■■■□□ 2.06
NUP88-203ENST00000572019 SBF2Q86WG5 1849 aa27.95■■■□□ 2.06
NUP88-203ENST00000572019 GCP02774 474 aa27.94■■■□□ 2.06
NUP88-203ENST00000572019 PARD3Q8TEW0 1356 aa27.94■■■□□ 2.06
NUP88-203ENST00000572019 COL18A1P39060 1754 aa27.92■■■□□ 2.06
NUP88-203ENST00000572019 SRPK2P78362 688 aaKnown RBP27.92■■■□□ 2.06
NUP88-203ENST00000572019 LRRC37A3O60309 1634 aa27.92■■■□□ 2.06
NUP88-203ENST00000572019 PIK3C2AO00443 1686 aa27.91■■■□□ 2.06
NUP88-203ENST00000572019 NLRP13Q86W25 1043 aa27.89■■■□□ 2.06
NUP88-203ENST00000572019 WNK3Q9BYP7 1800 aa27.89■■■□□ 2.06
NUP88-203ENST00000572019 CENPJQ9HC77 1338 aaPredicted RBP27.89■■■□□ 2.05
NUP88-203ENST00000572019 RGPD5Q99666 1765 aa27.88■■■□□ 2.05
NUP88-203ENST00000572019 SLIT3O75094 1523 aa27.88■■■□□ 2.05
NUP88-203ENST00000572019 ZBTB7CA1YPR0 619 aa27.88■■■□□ 2.05
NUP88-203ENST00000572019 USP6P35125 1406 aa27.87■■■□□ 2.05
NUP88-203ENST00000572019 CRB1P82279 1406 aa27.86■■■□□ 2.05
NUP88-203ENST00000572019 PTF1AQ7RTS3 328 aa27.86■■■□□ 2.05
NUP88-203ENST00000572019 CABP1Q9NZU7 370 aa27.85■■■□□ 2.05
NUP88-203ENST00000572019 THRAP3Q9Y2W1 955 aaKnown RBP27.85■■■□□ 2.05
NUP88-203ENST00000572019 NLRP6P59044 892 aa27.82■■■□□ 2.04
NUP88-203ENST00000572019 RGPD3A6NKT7 1758 aaPredicted RBP27.81■■■□□ 2.04
NUP88-203ENST00000572019 RGPD4Q7Z3J3 1758 aa27.81■■■□□ 2.04
NUP88-203ENST00000572019 AATKQ6ZMQ8 1374 aa27.81■■■□□ 2.04
NUP88-203ENST00000572019 AXIN2Q9Y2T1 843 aa27.8■■■□□ 2.04
NUP88-203ENST00000572019 OVOS2A0A0G2JMS6 1433 aa27.8■■■□□ 2.04
NUP88-203ENST00000572019 OVOS2A0A0J9YW53 1432 aa27.8■■■□□ 2.04
NUP88-203ENST00000572019 OVOS2Q6IE36 1432 aa27.8■■■□□ 2.04
NUP88-203ENST00000572019 AKAP12Q02952 1782 aa27.79■■■□□ 2.04
NUP88-203ENST00000572019 NBPF14Q5TI25 921 aa27.78■■■□□ 2.04
NUP88-203ENST00000572019 CASZ1Q86V15 1759 aa27.78■■■□□ 2.04
NUP88-203ENST00000572019 TRPM1Q7Z4N2 1603 aa27.78■■■□□ 2.04
NUP88-203ENST00000572019 BRD4O60885 1362 aaPredicted RBP27.77■■■□□ 2.04
NUP88-203ENST00000572019 ANO8Q9HCE9 1232 aaPredicted RBP27.77■■■□□ 2.04
NUP88-203ENST00000572019 TOM1L2Q6ZVM7 507 aa27.75■■■□□ 2.03
NUP88-203ENST00000572019 PDGFDQ9GZP0 370 aaPredicted RBP27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms