RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 CDK12Q9NYV4 1490 aaPredicted RBP18.56■□□□□ 0.56
CNOT1-220ENST00000569916 AKAP12Q02952 1782 aa18.55■□□□□ 0.56
CNOT1-220ENST00000569916 SLIT2O94813 1529 aa18.55■□□□□ 0.56
CNOT1-220ENST00000569916 BCL9LQ86UU0 1499 aa18.55■□□□□ 0.56
CNOT1-220ENST00000569916 USP21Q9UK80 565 aa18.54■□□□□ 0.56
CNOT1-220ENST00000569916 ATRNO75882 1429 aa18.54■□□□□ 0.56
CNOT1-220ENST00000569916 PLEKHG5O94827 1062 aa18.53■□□□□ 0.56
CNOT1-220ENST00000569916 RXRBP28702 533 aa18.53■□□□□ 0.56
CNOT1-220ENST00000569916 QTRT2Q9H974 415 aaKnown RBP18.53■□□□□ 0.56
CNOT1-220ENST00000569916 NRAPQ86VF7 1730 aa18.52■□□□□ 0.56
CNOT1-220ENST00000569916 PAK3O75914 559 aaPredicted RBP18.52■□□□□ 0.56
CNOT1-220ENST00000569916 HAP1P54257 671 aaPredicted RBP18.52■□□□□ 0.56
CNOT1-220ENST00000569916 COL14A1Q05707 1796 aaKnown RBP18.52■□□□□ 0.55
CNOT1-220ENST00000569916 NRKQ7Z2Y5 1582 aa18.51■□□□□ 0.55
CNOT1-220ENST00000569916 RGS12O14924 1447 aa18.51■□□□□ 0.55
CNOT1-220ENST00000569916 USP6P35125 1406 aa18.5■□□□□ 0.55
CNOT1-220ENST00000569916 MON2Q7Z3U7 1717 aa18.5■□□□□ 0.55
CNOT1-220ENST00000569916 RBM6P78332 1123 aaKnown RBP18.5■□□□□ 0.55
CNOT1-220ENST00000569916 TRPC5Q9UL62 973 aaPredicted RBP18.5■□□□□ 0.55
CNOT1-220ENST00000569916 CABP1Q9NZU7 370 aa18.49■□□□□ 0.55
CNOT1-220ENST00000569916 ATAD2Q6PL18 1390 aa18.49■□□□□ 0.55
CNOT1-220ENST00000569916 PIK3C2AO00443 1686 aa18.49■□□□□ 0.55
CNOT1-220ENST00000569916 GLI3P10071 1580 aa18.48■□□□□ 0.55
CNOT1-220ENST00000569916 BRD4O60885 1362 aaPredicted RBP18.48■□□□□ 0.55
CNOT1-220ENST00000569916 TIMELESSQ9UNS1 1208 aa18.48■□□□□ 0.55
CNOT1-220ENST00000569916 SSH2Q76I76 1423 aa18.47■□□□□ 0.55
CNOT1-220ENST00000569916 UNC5CLQ8IV45 518 aa18.45■□□□□ 0.54
CNOT1-220ENST00000569916 CPSF1Q10570 1443 aaKnown RBP18.44■□□□□ 0.54
CNOT1-220ENST00000569916 FAM83GA6ND36 823 aa18.44■□□□□ 0.54
CNOT1-220ENST00000569916 NUTM2GQ5VZR2 741 aa18.44■□□□□ 0.54
CNOT1-220ENST00000569916 CCER1Q8TC90 406 aaPredicted RBP18.44■□□□□ 0.54
CNOT1-220ENST00000569916 TESK2Q96S53 571 aa18.44■□□□□ 0.54
CNOT1-220ENST00000569916 USP47Q96K76 1375 aa18.43■□□□□ 0.54
CNOT1-220ENST00000569916 ST20-MTHFSA0A0A6YYL1 179 aa18.43■□□□□ 0.54
CNOT1-220ENST00000569916 CD163L1Q9NR16 1453 aa18.43■□□□□ 0.54
CNOT1-220ENST00000569916 USP19O94966 1318 aa18.43■□□□□ 0.54
CNOT1-220ENST00000569916 ABTB2Q8N961 1025 aa18.42■□□□□ 0.54
CNOT1-220ENST00000569916 SLIT3O75094 1523 aa18.42■□□□□ 0.54
CNOT1-220ENST00000569916 LMO7Q8WWI1 1683 aa18.41■□□□□ 0.54
CNOT1-220ENST00000569916 GJD4Q96KN9 370 aaPredicted RBP18.41■□□□□ 0.54
CNOT1-220ENST00000569916 KIAA0232Q92628 1395 aa18.41■□□□□ 0.54
CNOT1-220ENST00000569916 USP54Q70EL1 1684 aa18.41■□□□□ 0.54
CNOT1-220ENST00000569916 BRWD3Q6RI45 1802 aa18.39■□□□□ 0.54
CNOT1-220ENST00000569916 VPS72Q15906 364 aa18.39■□□□□ 0.53
CNOT1-220ENST00000569916 ZNF692Q9BU19 519 aaPredicted RBP18.39■□□□□ 0.53
CNOT1-220ENST00000569916 PRDM11Q9NQV5 511 aa18.39■□□□□ 0.53
CNOT1-220ENST00000569916 KTN1Q86UP2 1357 aaKnown RBP18.39■□□□□ 0.53
CNOT1-220ENST00000569916 NLRP13Q86W25 1043 aa18.38■□□□□ 0.53
CNOT1-220ENST00000569916 PUS7Q96PZ0 661 aaKnown RBP18.38■□□□□ 0.53
CNOT1-220ENST00000569916 BTG4Q9NY30 223 aa18.38■□□□□ 0.53
CNOT1-220ENST00000569916 TTC21BQ7Z4L5 1316 aa18.37■□□□□ 0.53
CNOT1-220ENST00000569916 CPDO75976 1380 aa18.37■□□□□ 0.53
CNOT1-220ENST00000569916 ZC3H6P61129 1189 aaKnown RBP18.36■□□□□ 0.53
CNOT1-220ENST00000569916 TTC21AQ8NDW8 1320 aa18.35■□□□□ 0.53
CNOT1-220ENST00000569916 CHRNA2Q15822 529 aa18.35■□□□□ 0.53
CNOT1-220ENST00000569916 CAMTA1Q9Y6Y1 1673 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 A0A1W2PP64 1363 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 NINLQ9Y2I6 1382 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 SLC24A1O60721 1099 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 GCP02774 474 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 NLRP6P59044 892 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 TMC1Q8TDI8 760 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 SLC12A5Q9H2X9 1139 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 COL18A1P39060 1754 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 MYOM1P52179 1685 aa18.34■□□□□ 0.53
CNOT1-220ENST00000569916 UPF1Q92900 1129 aaKnown RBP eCLIP18.33■□□□□ 0.52
CNOT1-220ENST00000569916 NFAT5O94916 1531 aa18.33■□□□□ 0.52
CNOT1-220ENST00000569916 EDC4Q6P2E9 1401 aaKnown RBP18.32■□□□□ 0.52
CNOT1-220ENST00000569916 THSD7AQ9UPZ6 1657 aa18.32■□□□□ 0.52
CNOT1-220ENST00000569916 CCDC9Q9Y3X0 531 aaKnown RBP18.32■□□□□ 0.52
CNOT1-220ENST00000569916 RGPD5Q99666 1765 aa18.3■□□□□ 0.52
CNOT1-220ENST00000569916 TMF1P82094 1093 aa18.3■□□□□ 0.52
CNOT1-220ENST00000569916 HDGFL2Q7Z4V5 671 aaPredicted RBP18.3■□□□□ 0.52
CNOT1-220ENST00000569916 USP31Q70CQ4 1352 aa18.3■□□□□ 0.52
CNOT1-220ENST00000569916 SPATA31A5Q5VU36 1347 aa18.29■□□□□ 0.52
CNOT1-220ENST00000569916 SPATA31A7Q8IWB4 1347 aa18.29■□□□□ 0.52
CNOT1-220ENST00000569916 COL5A2P05997 1499 aaPredicted RBP18.29■□□□□ 0.52
CNOT1-220ENST00000569916 ONECUT3O60422 494 aaPredicted RBP18.29■□□□□ 0.52
CNOT1-220ENST00000569916 TERF2IPQ9NYB0 399 aa18.29■□□□□ 0.52
CNOT1-220ENST00000569916 LTN1O94822 1766 aa18.29■□□□□ 0.52
CNOT1-220ENST00000569916 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.28■□□□□ 0.52
CNOT1-220ENST00000569916 SEPT12Q8IYM1 358 aa18.28■□□□□ 0.52
CNOT1-220ENST00000569916 STRN4Q9NRL3 753 aa18.27■□□□□ 0.52
CNOT1-220ENST00000569916 AATKQ6ZMQ8 1374 aa18.27■□□□□ 0.51
CNOT1-220ENST00000569916 ANKRD36BQ8N2N9 1353 aa18.27■□□□□ 0.51
CNOT1-220ENST00000569916 SPATA31A1Q5TZJ5 1347 aa18.26■□□□□ 0.51
CNOT1-220ENST00000569916 OVOS2A0A0J9YW53 1432 aa18.26■□□□□ 0.51
CNOT1-220ENST00000569916 OVOS2Q6IE36 1432 aa18.26■□□□□ 0.51
CNOT1-220ENST00000569916 NME9Q86XW9 330 aa18.26■□□□□ 0.51
CNOT1-220ENST00000569916 ZRANB1Q9UGI0 708 aa18.26■□□□□ 0.51
CNOT1-220ENST00000569916 ABCC6O95255 1503 aa18.26■□□□□ 0.51
CNOT1-220ENST00000569916 WNK3Q9BYP7 1800 aa18.26■□□□□ 0.51
CNOT1-220ENST00000569916 FAM98CQ17RN3 349 aaKnown RBP18.25■□□□□ 0.51
CNOT1-220ENST00000569916 KCNH5Q8NCM2 988 aa18.25■□□□□ 0.51
CNOT1-220ENST00000569916 KIF20BQ96Q89 1820 aa18.25■□□□□ 0.51
CNOT1-220ENST00000569916 EP400Q96L91 3159 aa18.24■□□□□ 0.51
CNOT1-220ENST00000569916 ZBTB7CA1YPR0 619 aa18.23■□□□□ 0.51
CNOT1-220ENST00000569916 CDCA8Q53HL2 280 aa18.23■□□□□ 0.51
CNOT1-220ENST00000569916 ARHGEF25Q86VW2 580 aa18.23■□□□□ 0.51
CNOT1-220ENST00000569916 SOX12O15370 315 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms