RNA–Protein interactions for RNA: ENST00000568292.1

CDH3-207, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-207ENST00000568292 ABTB2Q8N961 1025 aa14.55□□□□□ -0.08
CDH3-207ENST00000568292 PPIP5K1Q6PFW1 1433 aa14.55□□□□□ -0.08
CDH3-207ENST00000568292 BCL9LQ86UU0 1499 aa14.55□□□□□ -0.08
CDH3-207ENST00000568292 SLC24A1O60721 1099 aa14.54□□□□□ -0.08
CDH3-207ENST00000568292 NUTM2GQ5VZR2 741 aa14.54□□□□□ -0.08
CDH3-207ENST00000568292 BRD4O60885 1362 aaPredicted RBP14.54□□□□□ -0.08
CDH3-207ENST00000568292 ATRNO75882 1429 aa14.54□□□□□ -0.08
CDH3-207ENST00000568292 ITSN1Q15811 1721 aa14.53□□□□□ -0.08
CDH3-207ENST00000568292 NLRP13Q86W25 1043 aa14.53□□□□□ -0.08
CDH3-207ENST00000568292 QRICH2Q9H0J4 1663 aa14.52□□□□□ -0.08
CDH3-207ENST00000568292 SLIT2O94813 1529 aa14.52□□□□□ -0.08
CDH3-207ENST00000568292 RALGAPBQ86X10 1494 aa14.52□□□□□ -0.08
CDH3-207ENST00000568292 VPS72Q15906 364 aa14.52□□□□□ -0.09
CDH3-207ENST00000568292 TRPM3Q9HCF6 1732 aaPredicted RBP14.52□□□□□ -0.09
CDH3-207ENST00000568292 CCDC9Q9Y3X0 531 aaKnown RBP14.51□□□□□ -0.09
CDH3-207ENST00000568292 ATAD2Q6PL18 1390 aa14.5□□□□□ -0.09
CDH3-207ENST00000568292 MARF1Q9Y4F3 1742 aaKnown RBP14.5□□□□□ -0.09
CDH3-207ENST00000568292 CCER1Q8TC90 406 aaPredicted RBP14.5□□□□□ -0.09
CDH3-207ENST00000568292 UPF1Q92900 1129 aaKnown RBP eCLIP14.5□□□□□ -0.09
CDH3-207ENST00000568292 PUS7Q96PZ0 661 aaKnown RBP14.5□□□□□ -0.09
CDH3-207ENST00000568292 PRDM11Q9NQV5 511 aa14.5□□□□□ -0.09
CDH3-207ENST00000568292 BTG4Q9NY30 223 aa14.5□□□□□ -0.09
CDH3-207ENST00000568292 SBNO2Q9Y2G9 1366 aa14.49□□□□□ -0.09
CDH3-207ENST00000568292 ALS2Q96Q42 1657 aa14.49□□□□□ -0.09
CDH3-207ENST00000568292 ST20-MTHFSA0A0A6YYL1 179 aa14.49□□□□□ -0.09
CDH3-207ENST00000568292 NLRP6P59044 892 aa14.49□□□□□ -0.09
CDH3-207ENST00000568292 ZC3H6P61129 1189 aaKnown RBP14.49□□□□□ -0.09
CDH3-207ENST00000568292 RGS12O14924 1447 aa14.49□□□□□ -0.09
CDH3-207ENST00000568292 GCP02774 474 aa14.48□□□□□ -0.09
CDH3-207ENST00000568292 TMC1Q8TDI8 760 aa14.48□□□□□ -0.09
CDH3-207ENST00000568292 TOPAZ1Q8N9V7 1692 aa14.48□□□□□ -0.09
CDH3-207ENST00000568292 PELP1Q8IZL8 1130 aaKnown RBP14.47□□□□□ -0.09
CDH3-207ENST00000568292 USP6P35125 1406 aa14.47□□□□□ -0.09
CDH3-207ENST00000568292 TTC21BQ7Z4L5 1316 aa14.46□□□□□ -0.09
CDH3-207ENST00000568292 ONECUT3O60422 494 aaPredicted RBP14.46□□□□□ -0.09
CDH3-207ENST00000568292 EVA1CP58658 441 aa14.46□□□□□ -0.09
CDH3-207ENST00000568292 CHRNA2Q15822 529 aa14.46□□□□□ -0.09
CDH3-207ENST00000568292 KIAA0232Q92628 1395 aa14.46□□□□□ -0.1
CDH3-207ENST00000568292 HDGFL2Q7Z4V5 671 aaPredicted RBP14.45□□□□□ -0.1
CDH3-207ENST00000568292 TESK2Q96S53 571 aa14.45□□□□□ -0.1
CDH3-207ENST00000568292 SLC12A5Q9H2X9 1139 aa14.45□□□□□ -0.1
CDH3-207ENST00000568292 USP19O94966 1318 aa14.44□□□□□ -0.1
CDH3-207ENST00000568292 TTC21AQ8NDW8 1320 aa14.44□□□□□ -0.1
CDH3-207ENST00000568292 SEPT12Q8IYM1 358 aa14.44□□□□□ -0.1
CDH3-207ENST00000568292 TERF2IPQ9NYB0 399 aa14.44□□□□□ -0.1
CDH3-207ENST00000568292 KTN1Q86UP2 1357 aaKnown RBP14.44□□□□□ -0.1
CDH3-207ENST00000568292 SSH2Q76I76 1423 aa14.43□□□□□ -0.1
CDH3-207ENST00000568292 TMF1P82094 1093 aa14.43□□□□□ -0.1
CDH3-207ENST00000568292 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.43□□□□□ -0.1
CDH3-207ENST00000568292 CPSF1Q10570 1443 aaKnown RBP14.42□□□□□ -0.1
CDH3-207ENST00000568292 ABCA3Q99758 1704 aa14.42□□□□□ -0.1
CDH3-207ENST00000568292 KCNH5Q8NCM2 988 aa14.42□□□□□ -0.1
CDH3-207ENST00000568292 STRN4Q9NRL3 753 aa14.42□□□□□ -0.1
CDH3-207ENST00000568292 COL14A1Q05707 1796 aaKnown RBP14.42□□□□□ -0.1
CDH3-207ENST00000568292 SPATA31A5Q5VU36 1347 aa14.41□□□□□ -0.1
CDH3-207ENST00000568292 SPATA31A7Q8IWB4 1347 aa14.41□□□□□ -0.1
CDH3-207ENST00000568292 NWD2Q9ULI1 1742 aa14.41□□□□□ -0.1
CDH3-207ENST00000568292 A0A0G2JS52 829 aa14.41□□□□□ -0.1
CDH3-207ENST00000568292 ZBTB7CA1YPR0 619 aa14.41□□□□□ -0.1
CDH3-207ENST00000568292 MYT1Q01538 1121 aa14.41□□□□□ -0.1
CDH3-207ENST00000568292 FAM98CQ17RN3 349 aaKnown RBP14.41□□□□□ -0.1
CDH3-207ENST00000568292 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.41□□□□□ -0.1
CDH3-207ENST00000568292 CPDO75976 1380 aa14.41□□□□□ -0.1
CDH3-207ENST00000568292 USP47Q96K76 1375 aa14.4□□□□□ -0.1
CDH3-207ENST00000568292 CDCA8Q53HL2 280 aa14.4□□□□□ -0.1
CDH3-207ENST00000568292 CCDC125Q86Z20 511 aa14.4□□□□□ -0.1
CDH3-207ENST00000568292 PLCH1Q4KWH8 1693 aa14.39□□□□□ -0.11
CDH3-207ENST00000568292 GLI3P10071 1580 aa14.39□□□□□ -0.11
CDH3-207ENST00000568292 CRYBG1Q9Y4K1 1723 aa14.38□□□□□ -0.11
CDH3-207ENST00000568292 KRT27Q7Z3Y8 459 aa14.38□□□□□ -0.11
CDH3-207ENST00000568292 SPATA31A1Q5TZJ5 1347 aa14.38□□□□□ -0.11
CDH3-207ENST00000568292 NINLQ9Y2I6 1382 aa14.37□□□□□ -0.11
CDH3-207ENST00000568292 PHRF1Q9P1Y6 1649 aaKnown RBP14.37□□□□□ -0.11
CDH3-207ENST00000568292 AATKQ6ZMQ8 1374 aa14.36□□□□□ -0.11
CDH3-207ENST00000568292 SOX12O15370 315 aa14.36□□□□□ -0.11
CDH3-207ENST00000568292 LARP1Q6PKG0 1096 aaKnown RBP14.36□□□□□ -0.11
CDH3-207ENST00000568292 ARHGEF25Q86VW2 580 aa14.36□□□□□ -0.11
CDH3-207ENST00000568292 USP35Q9P2H5 1018 aa14.36□□□□□ -0.11
CDH3-207ENST00000568292 ZRANB1Q9UGI0 708 aa14.36□□□□□ -0.11
CDH3-207ENST00000568292 NME9Q86XW9 330 aa14.35□□□□□ -0.11
CDH3-207ENST00000568292 THRAP3Q9Y2W1 955 aaKnown RBP14.35□□□□□ -0.11
CDH3-207ENST00000568292 USP31Q70CQ4 1352 aa14.34□□□□□ -0.11
CDH3-207ENST00000568292 EDC4Q6P2E9 1401 aaKnown RBP14.34□□□□□ -0.11
CDH3-207ENST00000568292 CD163L1Q9NR16 1453 aa14.34□□□□□ -0.11
CDH3-207ENST00000568292 BARGINQ6ZT62 677 aa14.34□□□□□ -0.11
CDH3-207ENST00000568292 TCP11L2Q8N4U5 519 aa14.34□□□□□ -0.11
CDH3-207ENST00000568292 SLIT3O75094 1523 aa14.34□□□□□ -0.11
CDH3-207ENST00000568292 AKAP12Q02952 1782 aa14.34□□□□□ -0.11
CDH3-207ENST00000568292 NRKQ7Z2Y5 1582 aa14.34□□□□□ -0.11
CDH3-207ENST00000568292 CAMTA1Q9Y6Y1 1673 aa14.33□□□□□ -0.11
CDH3-207ENST00000568292 NRAPQ86VF7 1730 aa14.33□□□□□ -0.12
CDH3-207ENST00000568292 EIF4G2P78344 907 aaKnown RBP eCLIP14.33□□□□□ -0.12
CDH3-207ENST00000568292 SF3B2Q13435 895 aaKnown RBP14.33□□□□□ -0.12
CDH3-207ENST00000568292 AXIN2Q9Y2T1 843 aa14.33□□□□□ -0.12
CDH3-207ENST00000568292 A0A1W2PP64 1363 aa14.33□□□□□ -0.12
CDH3-207ENST00000568292 TOM1L2Q6ZVM7 507 aa14.32□□□□□ -0.12
CDH3-207ENST00000568292 PIK3C2AO00443 1686 aa14.31□□□□□ -0.12
CDH3-207ENST00000568292 PDE3BQ13370 1112 aa14.31□□□□□ -0.12
CDH3-207ENST00000568292 COG3Q96JB2 828 aa14.31□□□□□ -0.12
CDH3-207ENST00000568292 CSB-PGBD3P0DP91 1061 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms