RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 PMFBP1Q8TBY8 1022 aa13.67□□□□□ -0.22
SF3B3-211ENST00000568291 ZRANB1Q9UGI0 708 aa13.67□□□□□ -0.22
SF3B3-211ENST00000568291 CCDC125Q86Z20 511 aa13.66□□□□□ -0.22
SF3B3-211ENST00000568291 PHRF1Q9P1Y6 1649 aaKnown RBP13.65□□□□□ -0.22
SF3B3-211ENST00000568291 VPS72Q15906 364 aa13.65□□□□□ -0.22
SF3B3-211ENST00000568291 TOPAZ1Q8N9V7 1692 aa13.64□□□□□ -0.23
SF3B3-211ENST00000568291 CCDC9Q9Y3X0 531 aaKnown RBP13.64□□□□□ -0.23
SF3B3-211ENST00000568291 RGPD1P0DJD0 1748 aa13.64□□□□□ -0.23
SF3B3-211ENST00000568291 PRR36Q9H6K5 1346 aa13.64□□□□□ -0.23
SF3B3-211ENST00000568291 GPRASP1Q5JY77 1395 aa13.63□□□□□ -0.23
SF3B3-211ENST00000568291 WASLO00401 505 aaPredicted RBP13.63□□□□□ -0.23
SF3B3-211ENST00000568291 SEPT12Q8IYM1 358 aa13.63□□□□□ -0.23
SF3B3-211ENST00000568291 ATP7BP35670 1465 aa13.62□□□□□ -0.23
SF3B3-211ENST00000568291 CDK19Q9BWU1 502 aa13.62□□□□□ -0.23
SF3B3-211ENST00000568291 THSD7AQ9UPZ6 1657 aa13.62□□□□□ -0.23
SF3B3-211ENST00000568291 KIAA1210Q9ULL0 1709 aa13.61□□□□□ -0.23
SF3B3-211ENST00000568291 LRP5O75197 1615 aa13.61□□□□□ -0.23
SF3B3-211ENST00000568291 A0A0G2JS52 829 aa13.6□□□□□ -0.23
SF3B3-211ENST00000568291 FAM83GA6ND36 823 aa13.6□□□□□ -0.23
SF3B3-211ENST00000568291 MYT1Q01538 1121 aa13.6□□□□□ -0.23
SF3B3-211ENST00000568291 SF3B2Q13435 895 aaKnown RBP13.6□□□□□ -0.23
SF3B3-211ENST00000568291 TNS1Q9HBL0 1735 aaKnown RBP13.6□□□□□ -0.23
SF3B3-211ENST00000568291 TONSLQ96HA7 1378 aa13.59□□□□□ -0.23
SF3B3-211ENST00000568291 KRT27Q7Z3Y8 459 aa13.59□□□□□ -0.23
SF3B3-211ENST00000568291 DEFB132Q7Z7B7 95 aa13.59□□□□□ -0.23
SF3B3-211ENST00000568291 NUDT16Q96DE0 195 aaKnown RBP13.59□□□□□ -0.23
SF3B3-211ENST00000568291 CABP2Q9NPB3 220 aa13.59□□□□□ -0.23
SF3B3-211ENST00000568291 ROCK2O75116 1388 aaKnown RBP13.58□□□□□ -0.24
SF3B3-211ENST00000568291 ONECUT3O60422 494 aaPredicted RBP13.57□□□□□ -0.24
SF3B3-211ENST00000568291 NGDNQ8NEJ9 315 aaKnown RBP13.57□□□□□ -0.24
SF3B3-211ENST00000568291 BTG4Q9NY30 223 aa13.57□□□□□ -0.24
SF3B3-211ENST00000568291 CENPJQ9HC77 1338 aaPredicted RBP13.57□□□□□ -0.24
SF3B3-211ENST00000568291 NRKQ7Z2Y5 1582 aa13.57□□□□□ -0.24
SF3B3-211ENST00000568291 SRPK2P78362 688 aaKnown RBP13.56□□□□□ -0.24
SF3B3-211ENST00000568291 FAM98CQ17RN3 349 aaKnown RBP13.56□□□□□ -0.24
SF3B3-211ENST00000568291 PAK3O75914 559 aaPredicted RBP13.55□□□□□ -0.24
SF3B3-211ENST00000568291 CARD11Q9BXL7 1154 aa13.55□□□□□ -0.24
SF3B3-211ENST00000568291 QRICH2Q9H0J4 1663 aa13.54□□□□□ -0.24
SF3B3-211ENST00000568291 SRCAPQ6ZRS2 3230 aa13.54□□□□□ -0.24
SF3B3-211ENST00000568291 PRDM11Q9NQV5 511 aa13.54□□□□□ -0.24
SF3B3-211ENST00000568291 SPATA31A5Q5VU36 1347 aa13.54□□□□□ -0.24
SF3B3-211ENST00000568291 SPATA31A7Q8IWB4 1347 aa13.54□□□□□ -0.24
SF3B3-211ENST00000568291 BAG6P46379 1132 aa13.53□□□□□ -0.24
SF3B3-211ENST00000568291 NUTM2GQ5VZR2 741 aa13.53□□□□□ -0.24
SF3B3-211ENST00000568291 CCER1Q8TC90 406 aaPredicted RBP13.53□□□□□ -0.24
SF3B3-211ENST00000568291 KIAA0232Q92628 1395 aa13.53□□□□□ -0.24
SF3B3-211ENST00000568291 LMO7Q8WWI1 1683 aa13.52□□□□□ -0.25
SF3B3-211ENST00000568291 POLR3AO14802 1390 aaPredicted RBP13.51□□□□□ -0.25
SF3B3-211ENST00000568291 ACEP12821 1306 aa13.51□□□□□ -0.25
SF3B3-211ENST00000568291 CABP1Q9NZU7 370 aa13.51□□□□□ -0.25
SF3B3-211ENST00000568291 CCDC61Q9Y6R9 512 aa13.51□□□□□ -0.25
SF3B3-211ENST00000568291 DISP2A7MBM2 1401 aa13.5□□□□□ -0.25
SF3B3-211ENST00000568291 RREB1Q92766 1687 aa13.5□□□□□ -0.25
SF3B3-211ENST00000568291 CHRNA2Q15822 529 aa13.49□□□□□ -0.25
SF3B3-211ENST00000568291 FAM182BQ5T319 152 aa13.49□□□□□ -0.25
SF3B3-211ENST00000568291 SSH2Q76I76 1423 aa13.48□□□□□ -0.25
SF3B3-211ENST00000568291 SPATA31A1Q5TZJ5 1347 aa13.48□□□□□ -0.25
SF3B3-211ENST00000568291 PSDA5PKW4 1024 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-211ENST00000568291 PPP4R3CPQ6ZMV5 832 aa13.48□□□□□ -0.25
SF3B3-211ENST00000568291 STRN4Q9NRL3 753 aa13.48□□□□□ -0.25
SF3B3-211ENST00000568291 NUP188Q5SRE5 1749 aa13.47□□□□□ -0.25
SF3B3-211ENST00000568291 PLEKHG3A1L390 1219 aa13.47□□□□□ -0.25
SF3B3-211ENST00000568291 ZC3H6P61129 1189 aaKnown RBP13.47□□□□□ -0.25
SF3B3-211ENST00000568291 WNK3Q9BYP7 1800 aa13.47□□□□□ -0.25
SF3B3-211ENST00000568291 PARP4Q9UKK3 1724 aaKnown RBP13.47□□□□□ -0.25
SF3B3-211ENST00000568291 CAMTA1Q9Y6Y1 1673 aa13.47□□□□□ -0.25
SF3B3-211ENST00000568291 EVC2Q86UK5 1308 aa13.46□□□□□ -0.25
SF3B3-211ENST00000568291 PPIP5K1Q6PFW1 1433 aa13.46□□□□□ -0.26
SF3B3-211ENST00000568291 USP19O94966 1318 aa13.45□□□□□ -0.26
SF3B3-211ENST00000568291 ST20-MTHFSA0A0A6YYL1 179 aa13.45□□□□□ -0.26
SF3B3-211ENST00000568291 EN1Q05925 392 aaPredicted RBP13.45□□□□□ -0.26
SF3B3-211ENST00000568291 TRPM1Q7Z4N2 1603 aa13.45□□□□□ -0.26
SF3B3-211ENST00000568291 CPDO75976 1380 aa13.45□□□□□ -0.26
SF3B3-211ENST00000568291 PIK3C2AO00443 1686 aa13.44□□□□□ -0.26
SF3B3-211ENST00000568291 LRRC37A3O60309 1634 aa13.43□□□□□ -0.26
SF3B3-211ENST00000568291 AKAP12Q02952 1782 aa13.43□□□□□ -0.26
SF3B3-211ENST00000568291 ABTB2Q8N961 1025 aa13.43□□□□□ -0.26
SF3B3-211ENST00000568291 USP35Q9P2H5 1018 aa13.43□□□□□ -0.26
SF3B3-211ENST00000568291 SLIT3O75094 1523 aa13.43□□□□□ -0.26
SF3B3-211ENST00000568291 COL5A2P05997 1499 aaPredicted RBP13.42□□□□□ -0.26
SF3B3-211ENST00000568291 TMC1Q8TDI8 760 aa13.42□□□□□ -0.26
SF3B3-211ENST00000568291 SBF2Q86WG5 1849 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 USP6P35125 1406 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 TRIM37O94972 964 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 EVA1CP58658 441 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 R3HDM1Q15032 1099 aaKnown RBP13.41□□□□□ -0.26
SF3B3-211ENST00000568291 FAM196AQ6ZSG2 479 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 TESK2Q96S53 571 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 SLC12A5Q9H2X9 1139 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 PARD3Q8TEW0 1356 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 PEAK1Q9H792 1746 aa13.41□□□□□ -0.26
SF3B3-211ENST00000568291 RGPD3A6NKT7 1758 aaPredicted RBP13.4□□□□□ -0.26
SF3B3-211ENST00000568291 COL18A1P39060 1754 aa13.4□□□□□ -0.26
SF3B3-211ENST00000568291 RGPD4Q7Z3J3 1758 aa13.4□□□□□ -0.26
SF3B3-211ENST00000568291 RGPD5Q99666 1765 aa13.4□□□□□ -0.26
SF3B3-211ENST00000568291 ZBTB7CA1YPR0 619 aa13.4□□□□□ -0.26
SF3B3-211ENST00000568291 EZH2Q15910 746 aaKnown RBP13.4□□□□□ -0.26
SF3B3-211ENST00000568291 LARP1Q6PKG0 1096 aaKnown RBP13.4□□□□□ -0.26
SF3B3-211ENST00000568291 BARGINQ6ZT62 677 aa13.4□□□□□ -0.26
SF3B3-211ENST00000568291 BRD4O60885 1362 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms